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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259545 (58 seq.)
>W1710804985
LJZQ01000005
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
64855
64930
+
Val
TAC
[ENA]
¡û
>W1710804987
LJZQ01000005
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
65075
65150
+
Val
TAC
[ENA]
¡û
>WENV181234060
OFET01001620
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
2085
2160
+
Val
TAC
[ENA]
¡û
>WENV181234433
OFEU01000127
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
88349
88424
+
Val
TAC
[ENA]
¡û
>WENV182540362
OJAH01005841
[OJAH] seawater metagenome; Sea water
430
505
+
Val
TAC
[ENA]
¡û
>WENV182553515
OJCR01008684
[OJCR] seawater metagenome; Sea water
2248
2323
+
Val
TAC
[ENA]
¡û
>WENV182570865
OJFF01003474
[OJFF] seawater metagenome; Sea water
1099
1174
+
Val
TAC
[ENA]
¡û
>WENV182571646
OJFK01002823
[OJFK] seawater metagenome; Sea water
2560
2485
-
Val
TAC
[ENA]
¡û
>WENV182584292
OJHF01043452
[OJHF] seawater metagenome; Sea water
193
118
-
Val
TAC
[ENA]
¡û
>WENV170016000
AZIJ01006919
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
8268
8343
+
Val
TAC
[ENA]
¡û
>WENV170327556
CESU01092824
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
43
118
+
Val
TAC
[ENA]
¡û
>WENV170824099
MDSY01069630
[MDSY] marine metagenome; seawater
11867
11942
+
Val
TAC
[ENA]
¡û
>WENV170837508
MDSZ01150550
[MDSZ] marine metagenome; seawater
4713
4788
+
Val
TAC
[ENA]
¡û
>WENV170925394
MDTG01083419
[MDTG] marine metagenome; seawater
3819
3894
+
Val
TAC
[ENA]
¡û
>C181004548
AP018052
Gammaproteobacteria
Thiohalobacter thiocyanaticus FOKN1 [AP018052]
1666271
1666346
+
Val
TAC
-
¡û
>C191145544
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
2120909
2120984
+
Val
TAC
-
¡û
>W1910377394
FUKJ01000446
Gammaproteobacteria
Crenothrix polyspora [FUKJ]
23433
23358
-
Val
TAC
[ENA]
¡û
>W1911278059
NTFH01000001
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
135267
135342
+
Val
TAC
[ENA]
¡û
>W1911278061
NTFH01000001
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
135501
135576
+
Val
TAC
[ENA]
¡û
>W1911817840
QZMU01000001
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
366777
366702
-
Val
TAC
[ENA]
¡û
>W1810090416
PGGB01000007
Gammaproteobacteria
Caedibacter taeniospiralis 51K [PGGB]
3035
2960
-
Val
TAC
[ENA]
¡û
>W1810182882
PJZX01000024
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.89 [PJZX]
16211
16136
-
Val
TAC
[ENA]
¡û
>W1810182948
PJZZ01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.33 [PJZZ]
16221
16146
-
Val
TAC
[ENA]
¡û
>W1810183014
PKAB01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.85 [PKAB]
16299
16224
-
Val
TAC
[ENA]
¡û
>W1810183047
PKAC01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.45 [PKAC]
16299
16224
-
Val
TAC
[ENA]
¡û
>W1810183181
PKAG01000024
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.85 [PKAG]
16299
16224
-
Val
TAC
[ENA]
¡û
>W1810183245
PKAI01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.90 [PKAI]
16299
16224
-
Val
TAC
[ENA]
¡û
>W1810183344
PKAL01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.87 [PKAL]
16299
16224
-
Val
TAC
[ENA]
¡û
>W1810183443
PKAO01000024
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.61 [PKAO]
16211
16136
-
Val
TAC
[ENA]
¡û
>W1810183575
PKAS01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.53 [PKAS]
16299
16224
-
Val
TAC
[ENA]
¡û
>W1810183641
PKAU01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.59 [PKAU]
16168
16093
-
Val
TAC
[ENA]
¡û
>W1810183674
PKAV01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.62 [PKAV]
16141
16066
-
Val
TAC
[ENA]
¡û
>W1810183905
PKBC01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.89 [PKBC]
16521
16446
-
Val
TAC
[ENA]
¡û
>W1810184169
PKBK01000023
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.87 [PKBK]
16168
16093
-
Val
TAC
[ENA]
¡û
>W1810184334
PKBP01000020
Gammaproteobacteria
Francisella tularensis subsp. holarctica B.46 [PKBP]
10778
10853
+
Val
TAC
[ENA]
¡û
>W1810582845
QEWS01000001
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU61 [QEWS]
364104
364029
-
Val
TAC
[ENA]
¡û
>W1810582846
QEWS01000001
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU61 [QEWS]
363850
363775
-
Val
TAC
[ENA]
¡û
>W1810582905
QEWT01000002
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU60 [QEWT]
366385
366310
-
Val
TAC
[ENA]
¡û
>W1810582906
QEWT01000002
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU60 [QEWT]
366131
366056
-
Val
TAC
[ENA]
¡û
>W1810608481
QGTJ01000007
Gammaproteobacteria
Plasticicumulans acidivorans DSM 23606 [QGTJ]
41972
42047
+
Val
TAC
[ENA]
¡û
>W1810760179
QPJY01000002
Gammaproteobacteria
Thioalbus denitrificans DSM 26407 [QPJY]
536996
536921
-
Val
TAC
[ENA]
¡û
>W2010532626
JAAONZ010000004
Gammaproteobacteria
Aestuariicella hydrocarbonica JCM 30134 [JAAONZ]
117319
117394
+
Val
TAC
[ENA]
¡û
>W2010532628
JAAONZ010000004
Gammaproteobacteria
Aestuariicella hydrocarbonica JCM 30134 [JAAONZ]
318466
318541
+
Val
TAC
[ENA]
¡û
>W2010536144
JAAQPI010000006
Gammaproteobacteria
Pseudomaricurvus alkylphenolicus KCTC 32386 [JAAQPI]
46771
46696
-
Val
TAC
[ENA]
¡û
>W2010536157
JAAQPI010000016
Gammaproteobacteria
Pseudomaricurvus alkylphenolicus KCTC 32386 [JAAQPI]
5197
5122
-
Val
TAC
[ENA]
¡û
>W2011071778
NTFH01000001
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
135267
135342
+
Val
TAC
[ENA]
¡û
>W2011071780
NTFH01000001
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
135501
135576
+
Val
TAC
[ENA]
¡û
>W2011350343
QZMU01000001
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
366777
366702
-
Val
TAC
[ENA]
¡û
>W2110269797
JACVJL010000094
Gammaproteobacteria
Francisella noatunensis FDC189 [JACVJL]
872
797
-
Val
TAC
[ENA]
¡û
>W2110613795
JAHKRS010000004
Gammaproteobacteria
Aestuariicella sp. G3-2 [JAHKRS]
196872
196797
-
Val
TAC
[ENA]
¡û
>W2110613799
JAHKRS010000006
Gammaproteobacteria
Aestuariicella sp. G3-2 [JAHKRS]
198933
199008
+
Val
TAC
[ENA]
¡û
>C211008749
AP023240
Gammaproteobacteria
Methyloprofundus sp. [AP023240]
3622830
3622755
-
Val
TAC
-
¡û
>C211016794
AP024239
Gammaproteobacteria
Thiohalobacter sp. COW1 [AP024239]
1152607
1152532
-
Val
TAC
-
¡û
>C231333363
CP093379
Gammaproteobacteria
Ignatzschineria sp. HR5S32 [CP093379]
2031868
2031793
-
Val
TAC
-
¡û
>W1511534194
JYNR01000001
Gammaproteobacteria
Marinobacter excellens HL-55 [JYNR]
1815659
1815584
-
Val
TAC
[ENA]
¡û
>W1511534196
JYNR01000001
Gammaproteobacteria
Marinobacter excellens HL-55 [JYNR]
1815439
1815364
-
Val
TAC
[ENA]
¡û
>W1610668842
LJZQ01000005
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
64855
64930
+
Val
TAC
[ENA]
¡û
>W1610668844
LJZQ01000005
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
65075
65150
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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