This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259565 (25 seq.)
>C171074570
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1248667
1248592
-
Asn
GTT
-
¡û
>C171074622
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1268446
1268371
-
Asn
GTT
-
¡û
>C171074674
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1259440
1259365
-
Asn
GTT
-
¡û
>C171074726
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1266712
1266637
-
Asn
GTT
-
¡û
>C171074778
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1268447
1268372
-
Asn
GTT
-
¡û
>C171074830
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1248726
1248651
-
Asn
GTT
-
¡û
>C000498
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
3177457
3177382
-
Asn
GTT
[Ensembl]
¡û
>C009852
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1248696
1248621
-
Asn
GTT
[Ensembl]
¡û
>WENV180343809
OBLK01098699
[OBLK] soil metagenome; Clay
189
264
+
Asn
GTT
[ENA]
¢þ
>WENV181191500
OEPS010100909
[OEPS] soil metagenome; soil
243
318
+
Asn
GTT
[ENA]
¢þ
>WENV181296443
OFHJ01037270
[OFHJ] soil metagenome; Clay
559
484
-
Asn
GTT
[ENA]
¢þ
>WENV181407127
OGCG01007053
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2354
2279
-
Asn
GTT
[ENA]
¢þ
>W141462248
JFHO01000047
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
43275
43350
+
Asn
GTT
[ENA]
¡û
>C181175724
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
982038
981963
-
Asn
GTT
-
¡û
>W09105143
AAOO01000038
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
11639
11564
-
Asn
GTT
[ENA]
¡û
>C151004042
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1271129
1271054
-
Asn
GTT
[Ensembl]
¡û
>C151004078
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2199645
2199720
+
Asn
GTT
[Ensembl]
¡û
>C151004130
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2167078
2167153
+
Asn
GTT
[Ensembl]
¡û
>C11100956
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
3531780
3531705
-
Asn
GTT
[Ensembl]
¡û
>W1511318960
JPYW01001373
Alphaproteobacteria
Acidicaldus organivorans DX-1 [JPYW]
1455
1380
-
Asn
GTT
[ENA]
¡û
>W11170615
AFPR01000067
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
4604
4679
+
Asn
GTT
[ENA]
¡û
>W1610040978
BANA01000295
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1590
1515
-
Asn
GTT
[ENA]
¡û
>W1610041000
BANB01000140
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
2711
2786
+
Asn
GTT
[ENA]
¡û
>W1710038176
BANA01000295
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1590
1515
-
Asn
GTT
[ENA]
¡û
>W1710038198
BANB01000140
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
2711
2786
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK