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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259573 (53 seq.)
>W1710863844
LMFL01000011
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
15599
15524
-
Met
CAT
[ENA]
¡û
>W1710865552
LMGT01000006
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
216577
216652
+
Met
CAT
[ENA]
¡û
>W131160313
AQWM01000001
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AQWM]
204079
204154
+
Met
CAT
[ENA]
¡û
>C171094860
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
3055948
3056023
+
Met
CAT
-
¡û
>WENV180015741
FSTD01000053
[FSTD] metagenome; soil
9029
8954
-
Ile2
CAT
[ENA]
¡û
>WENV180016464
FSVF01000044
[FSVF] metagenome; soil
1576
1651
+
Ile2
CAT
[ENA]
¡û
>WENV180016578
FSVH01000301
[FSVH] metagenome; soil
10943
11018
+
Ile2
CAT
[ENA]
¡û
>WENV180017113
FSWM01000410
[FSWM] metagenome; soil
1703
1778
+
Ile2
CAT
[ENA]
¡û
>WENV180018425
FSZA01000140
[FSZA] metagenome; soil
1726
1801
+
Ile2
CAT
[ENA]
¡û
>WENV180018728
FTAI01000292
[FTAI] metagenome; soil
6339
6414
+
Ile2
CAT
[ENA]
¡û
>WENV180020743
FTDB01000815
[FTDB] metagenome; soil
5585
5510
-
Ile2
CAT
[ENA]
¡û
>WENV180021010
FTDJ01000955
[FTDJ] metagenome; soil
1191
1266
+
Ile2
CAT
[ENA]
¡û
>WENV180024777
FTIJ01010818
[FTIJ] metagenome; soil
6402
6327
-
Ile2
CAT
[ENA]
¡û
>WENV180027491
FTIZ01001100
[FTIZ] metagenome; soil
8924
8999
+
Ile2
CAT
[ENA]
¡û
>WENV180027776
FTIZ01077980
[FTIZ] metagenome; soil
3780
3705
-
Ile2
CAT
[ENA]
¡û
>WENV180028513
FTJE01000027
[FTJE] metagenome; soil
3615
3540
-
Ile2
CAT
[ENA]
¡û
>WENV180028520
FTJE01000877
[FTJE] metagenome; soil
991
916
-
Ile2
CAT
[ENA]
¡û
>WENV180028793
FTJH01000493
[FTJH] metagenome; soil
447
522
+
Ile2
CAT
[ENA]
¡û
>WENV180029060
FTJI01013372
[FTJI] metagenome; soil
102
27
-
Ile2
CAT
[ENA]
¡û
>WENV180033895
FTKM01000007
[FTKM] metagenome; soil
68939
68864
-
Ile2
CAT
[ENA]
¡û
>WENV180034581
FTKR01013234
[FTKR] metagenome; soil
102
27
-
Ile2
CAT
[ENA]
¡û
>WENV180035163
FTKT01003199
[FTKT] metagenome; soil
3419
3494
+
Ile2
CAT
[ENA]
¡û
>WENV180035249
FTKT01034385
[FTKT] metagenome; soil
4
79
+
Ile2
CAT
[ENA]
¡û
>WENV180035931
FTLB01061626
[FTLB] metagenome; soil
5
80
+
Ile2
CAT
[ENA]
¡û
>W141136680
AWGB01000006
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
176606
176681
+
Met
CAT
[ENA]
¡û
>W141136719
AWGC01000009
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
36340
36265
-
Met
CAT
[ENA]
¡û
>W141136762
AWGD01000009
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
13025
12950
-
Met
CAT
[ENA]
¡û
>W141230464
BATC01000014
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
39736
39811
+
Met
CAT
[ENA]
¡û
>WENV183697028
OUNJ010000784
[OUNJ] metagenome; soil
4442
4367
-
Ile2
CAT
[ENA]
¡û
>WENV183697029
OUNJ010000784
[OUNJ] metagenome; soil
4077
4002
-
Ile2
CAT
[ENA]
¡û
>WENV170565513
FJVW01000482
[FJVW] metagenome; soil
6392
6317
-
Met
CAT
[ENA]
¡û
>WENV170713593
LNFM01035420
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2617
2692
+
Met
CAT
[ENA]
¡û
>W1810000952
BEWU01000004
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
53513
53439
-
Met
CAT
[ENA]
¡û
>W2010435559
JAAALD010000047
Alphaproteobacteria
Rhizobium sp. CRIBSB [JAAALD]
20019
20094
+
Ile2
CAT
[ENA]
¡û
>W2010567847
JAATJM010000001
Alphaproteobacteria
Brevundimonas alba DSM 4736 [JAATJM]
338747
338821
+
Ile2
CAT
[ENA]
¡û
>W2010679567
JACDUB010000001
Alphaproteobacteria
Brevundimonas sp. B9D7B [JACDUB]
2619109
2619184
+
Ile2
CAT
[ENA]
¡û
>W2010700554
JACHFZ010000004
Alphaproteobacteria
Brevundimonas basaltis DSM 25335 [JACHFZ]
97936
98010
+
Ile2
CAT
[ENA]
¡û
>W2011687961
SSBC01000006
Alphaproteobacteria
Asticcacaulis sp. 3.1105 [SSBC]
3601
3526
-
Ile2
CAT
[ENA]
¡û
>W2012196065
VWNA01000001
Alphaproteobacteria
Rhizobiales bacterium Sp-1 [VWNA]
897326
897251
-
Ile2
CAT
[ENA]
¡û
>W2110050014
BMZB01000005
Alphaproteobacteria
Asticcacaulis endophyticus KCTC 32296 [BMZB]
42600
42675
+
Ile2
CAT
[ENA]
¡û
>W2110394077
JADWOW010000050
Alphaproteobacteria
Brevundimonas sp. BAL450 [JADWOW]
331
405
+
Ile2
CAT
[ENA]
¡û
>C211121516
CP059297
Alphaproteobacteria
Brevundimonas sp. AJA228-03 [CP059297]
1227002
1226927
-
Ile2
CAT
-
¡û
>C211376947
CP080376
Alphaproteobacteria
Brevundimonas sp. PAMC22021 [CP080376]
405371
405296
-
Ile2
CAT
-
¡û
>W10109866
ADBM01000019
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
14450
14525
+
Met
CAT
[ENA]
¡û
>C231560131
CP114542
Alphaproteobacteria
Brevundimonas subvibrioides Br6 [CP114542]
2479135
2479210
+
Ile2
CAT
-
¡û
>C231566412
CP115464
Alphaproteobacteria
Brevundimonas sp. NIBR10 [CP115464]
1717874
1717949
+
Ile2
CAT
-
¡û
>C241292628
CP130044
Alphaproteobacteria
Asticcacaulis sp. ZE23SCel15 [CP130044]
2356702
2356777
+
Ile2
CAT
-
¡û
>C10102209
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2770355
2770430
+
Met
CAT
[Ensembl]
¡û
>W2310025930
BSOY01000009
Alphaproteobacteria
Brevundimonas denitrificans NBRC 110107 [BSOY]
19855
19930
+
Ile2
CAT
[ENA]
¡û
>W11112303
ADBM01000019
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
14450
14525
+
Met
CAT
[ENA]
¡û
>W11123388
ADUH01000238
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
1905
1830
-
Met
CAT
[ENA]
¡û
>W1610726190
LMFL01000011
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
15599
15524
-
Met
CAT
[ENA]
¡û
>W1610727898
LMGT01000006
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
216577
216652
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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