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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259737 (105 seq.)
>W1710869628
LMJW01000016
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
327323
327398
+
Phe
GAA
[ENA]
¡û
>W1710893547
LNEW01000078
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
51314
51239
-
Phe
GAA
[ENA]
¡û
>W1710893720
LNFA01000260
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
10830
10905
+
Phe
GAA
[ENA]
¡û
>W1711188858
LWQU01000194
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
7518
7593
+
Phe
GAA
[ENA]
¡û
>W131094252
AONQ01000028
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
5593
5668
+
Phe
GAA
[ENA]
¡û
>W131225078
AUDH01000004
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
207007
206932
-
Phe
GAA
[ENA]
¡û
>W131043742
AMPS01000027
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
9170
9245
+
Phe
GAA
[ENA]
¡û
>WENV180027935
FTIZ01300543
[FTIZ] metagenome; soil
105
30
-
Phe
GAA
[ENA]
¡û
>WENV181166885
OEIU01003798
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6746
6671
-
Phe
GAA
[ENA]
¡û
>WENV181168128
OEIU01173680
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
452
527
+
Phe
GAA
[ENA]
¡û
>WENV181169527
OEIV010003640
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3656
3581
-
Phe
GAA
[ENA]
¡û
>WENV170000106
AERA01011478
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
76
1
-
Phe
GAA
[ENA]
¡û
>WENV170552797
CXWK01002097
[CXWK] wastewater metagenome; activated sludge
225500
225575
+
Phe
GAA
[ENA]
¡û
>WENV170577874
FSSH01002270
[FSSH] freshwater metagenome; drinking water
56998
57073
+
Phe
GAA
[ENA]
¡û
>WENV170649382
JRYC01003693
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
6742
6667
-
Phe
GAA
[ENA]
¡û
>WENV170653378
JRYI01129305
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
357
432
+
Phe
GAA
[ENA]
¡û
>WENV170709159
LNFM01000141
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
109047
109122
+
Phe
GAA
[ENA]
¡û
>WENV170710001
LNFM01001035
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
54742
54667
-
Phe
GAA
[ENA]
¡û
>WENV170710239
LNFM01001357
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
34503
34578
+
Phe
GAA
[ENA]
¡û
>WENV170710271
LNFM01001421
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
60678
60753
+
Phe
GAA
[ENA]
¡û
>WENV170711896
LNFM01008181
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12034
11959
-
Phe
GAA
[ENA]
¡û
>WENV170714051
LNFM01052206
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2685
2760
+
Phe
GAA
[ENA]
¡û
>C191014033
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
2254486
2254411
-
Phe
GAA
-
¡û
>W141561199
JHYG01000007
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
105721
105796
+
Phe
GAA
[ENA]
¡û
>W09135193
ACVL01000002
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
128563
128638
+
Phe
GAA
[ENA]
¡û
>W141779098
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
1673671
1673746
+
Phe
GAA
[ENA]
¡û
>C141010527
CP006912
Alphaproteobacteria
Hyphomicrobium nitrativorans NL23 [CP006912]
65323
65248
-
Phe
GAA
[Ensembl]
¡û
>W1910498959
FXXN01000020
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
142716
142641
-
Phe
GAA
[ENA]
¡û
>W1910635430
LNCQ01000056
Alphaproteobacteria
Bosea lupini FBZP-16 [LNCQ]
6241
6166
-
Phe
GAA
[ENA]
¡û
>W1910840135
MZXT01000012
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
561522
561597
+
Phe
GAA
[ENA]
¡û
>W1910840165
MZXU01000009
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
561522
561597
+
Phe
GAA
[ENA]
¡û
>W1910847667
NBDP01000030
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
66265
66190
-
Phe
GAA
[ENA]
¡û
>W1911139207
NOXS01000021
Alphaproteobacteria
Elstera sp. TH019 [NOXS]
81937
81862
-
Phe
GAA
[ENA]
¡û
>W1911247260
NSLI01000003
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
447334
447260
-
Phe
GAA
[ENA]
¡û
>W1911768602
QXGS01000028
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
647
572
-
Phe
GAA
[ENA]
¡û
>W1810062051
PDNU01000009
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
2788
2863
+
Phe
GAA
[ENA]
¡û
>W1810062309
PDOA01000003
Alphaproteobacteria
Pseudoroseomonas aestuarii JR1/69-1-13 [PDOA]
217691
217766
+
Phe
GAA
[ENA]
¡û
>W1810676919
QKMI01000018
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
66606
66681
+
Phe
GAA
[ENA]
¡û
>W2010303417
CABVLT010000017
Alphaproteobacteria
Bosea sp. EC-HK365B [CABVLT]
110684
110609
-
Phe
GAA
[ENA]
¡û
>W2010309610
CABWLL010000006
Alphaproteobacteria
Bosea sp. 125 [CABWLL]
78402
78477
+
Phe
GAA
[ENA]
¡û
>W2010310860
CABWMI010000020
Alphaproteobacteria
Bosea sp. 62 [CABWMI]
180135
180060
-
Phe
GAA
[ENA]
¡û
>W2010310912
CABWMJ010000026
Alphaproteobacteria
Bosea sp. 127 [CABWMJ]
4758
4683
-
Phe
GAA
[ENA]
¡û
>W2010311329
CABWMQ010000022
Alphaproteobacteria
Bosea sp. 29B [CABWMQ]
8942
9017
+
Phe
GAA
[ENA]
¡û
>W2010325903
CACVCF010000190
Alphaproteobacteria
Candidatus Terasakiella magnetica PR1 [CACVCF]
1240
1165
-
Phe
GAA
[ENA]
¡û
>W2010325958
CACVCG010000062
Alphaproteobacteria
Magnetospirillum sp. UT-4 [CACVCG]
6532
6607
+
Phe
GAA
[ENA]
¡û
>W2010418662
FXXN01000020
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
142716
142641
-
Phe
GAA
[ENA]
¡û
>W2010433305
JAAABL010000024
Alphaproteobacteria
Rhodovarius lipocyclicus CCUG 44693 [JAAABL]
35039
35114
+
Phe
GAA
[ENA]
¡û
>W2010473687
JAAIKB010000008
Alphaproteobacteria
Roseomonas sp. PeD5 [JAAIKB]
238735
238810
+
Phe
GAA
[ENA]
¡û
>W2010559664
JAASQI010000001
Alphaproteobacteria
Pseudochelatococcus lubricantis DSM 103870 [JAASQI]
872025
872100
+
Phe
GAA
[ENA]
¡û
>W2010567447
JAATJC010000001
Alphaproteobacteria
Sphingomonas kaistensis DSM 16846 [JAATJC]
820124
820049
-
Phe
GAA
[ENA]
¡û
>W2010722746
JACICC010000001
Alphaproteobacteria
Pseudochelatococcus contaminans DSM 28760 [JACICC]
541499
541574
+
Phe
GAA
[ENA]
¡û
>W2010724506
JACIDJ010000004
Alphaproteobacteria
Roseococcus suduntuyensis DSM 19979 [JACIDJ]
236078
236153
+
Phe
GAA
[ENA]
¡û
>W2010731595
JACIJE010000007
Alphaproteobacteria
Roseomonas alkaliterrae DSM 25895 [JACIJE]
176119
176044
-
Phe
GAA
[ENA]
¡û
>W2010782358
LNCQ01000056
Alphaproteobacteria
Bosea lupini FBZP-16 [LNCQ]
6241
6166
-
Phe
GAA
[ENA]
¡û
>W2010930222
MZXT01000012
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
561522
561597
+
Phe
GAA
[ENA]
¡û
>W2010930252
MZXU01000009
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
561522
561597
+
Phe
GAA
[ENA]
¡û
>W2010934335
NBDP01000030
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
66265
66190
-
Phe
GAA
[ENA]
¡û
>W2011014707
NOXS01000021
Alphaproteobacteria
Elstera sp. TH019 [NOXS]
81937
81862
-
Phe
GAA
[ENA]
¡û
>W2011070765
NSLI01000003
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
447334
447260
-
Phe
GAA
[ENA]
¡û
>W2011255632
QHJE01000001
Alphaproteobacteria
Hyphomicrobium methylovorum Bras1 [QHJE]
2202125
2202200
+
Phe
GAA
[ENA]
¡û
>W2011326159
QXGS01000028
Alphaproteobacteria
Roseomonas sp. CPCC 101021 [QXGS]
647
572
-
Phe
GAA
[ENA]
¡û
>W2011495220
RWKV01000010
Alphaproteobacteria
Aquabacter sp. Sn-9-2 [RWKV]
3193
3118
-
Phe
GAA
[ENA]
¡û
>W2011522051
SACL01000006
Alphaproteobacteria
Rhodovarius sp. CCP-6 [SACL]
117381
117306
-
Phe
GAA
[ENA]
¡û
>W2011647004
SNVJ01000003
Alphaproteobacteria
Roseomonas sp. M0104 [SNVJ]
299019
299094
+
Phe
GAA
[ENA]
¡û
>W2012012831
VFAC01000008
Alphaproteobacteria
Elioraea sp. PF-30 [VFAC]
8407
8482
+
Phe
GAA
[ENA]
¡û
>W2012152289
VUKA01000016
Alphaproteobacteria
Roseomonas oryzae KCTC 42542 [VUKA]
14151
14076
-
Phe
GAA
[ENA]
¡û
>W2110021697
BMES01000001
Alphaproteobacteria
Alsobacter metallidurans CGMCC 1.12214 [BMES]
2260515
2260440
-
Phe
GAA
[ENA]
¡û
>W2110028407
BMJZ01000010
Alphaproteobacteria
Elstera cyanobacteriorum CGMCC 1.15802 [BMJZ]
91768
91693
-
Phe
GAA
[ENA]
¡û
>W2110098531
CAJFDY010000018
Alphaproteobacteria
Bosea sp. 21B [CAJFDY]
8942
9017
+
Phe
GAA
[ENA]
¡û
>W2110098638
CAJFEA010000023
Alphaproteobacteria
Bosea sp. 46 [CAJFEA]
362743
362818
+
Phe
GAA
[ENA]
¡û
>W2110098676
CAJFEB010000018
Alphaproteobacteria
Bosea sp. 7B [CAJFEB]
4601
4526
-
Phe
GAA
[ENA]
¡û
>W2110138120
JAAEDM010000005
Alphaproteobacteria
Roseomonas soli LMG 31231 [JAAEDM]
15756
15681
-
Phe
GAA
[ENA]
¡û
>W2110198477
JACADQ010000105
Alphaproteobacteria
Roseomonas sp. MO17 [JACADQ]
11705
11630
-
Phe
GAA
[ENA]
¡û
>W2110265934
JACTUZ010000062
Alphaproteobacteria
Roseomonas ludipueritiae DSM 14915 [JACTUZ]
6335
6410
+
Phe
GAA
[ENA]
¡û
>W2110315393
JADFCQ010000003
Alphaproteobacteria
Acetobacteraceae bacterium H6797 [JADFCQ]
42468
42393
-
Phe
GAA
[ENA]
¡û
>W2110445344
JAERQN010000006
Alphaproteobacteria
Roseomonas ponticola SYSU M41301 [JAERQN]
246779
246854
+
Phe
GAA
[ENA]
¡û
>W2110492563
JAFEUU010000010
Alphaproteobacteria
Rubritepida sp. SYSU D01096 [JAFEUU]
46466
46541
+
Phe
GAA
[ENA]
¡û
>W2110494803
JAFFQX010000024
Alphaproteobacteria
Roseococcus suduntuyensis SHET [JAFFQX]
215299
215374
+
Phe
GAA
[ENA]
¡û
>W2110494822
JAFFQY010000002
Alphaproteobacteria
Roseococcus thiosulfatophilus RB-3 [JAFFQY]
35824
35899
+
Phe
GAA
[ENA]
¡û
>W2110556342
JAGIYZ010000030
Alphaproteobacteria
Roseomonas sp. PWR1 [JAGIYZ]
41509
41434
-
Phe
GAA
[ENA]
¡û
>C211152113
CP061718
Alphaproteobacteria
Roseococcus sp. NIBR12 [CP061718]
4104570
4104495
-
Phe
GAA
-
¡û
>C211197479
CP064988
Alphaproteobacteria
Rhodospirillales bacterium [CP064988]
888540
888465
-
Phe
GAA
-
¡û
>C231018034
AP025637
Alphaproteobacteria
Roseomonas sp. S08 [AP025637]
3509937
3510012
+
Phe
GAA
-
¡û
>W1510072655
CDHO01000003
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
1516322
1516397
+
Phe
GAA
[ENA]
¡û
>C231381047
CP097253
Alphaproteobacteria
Sphingomonas glaciei S8-45 [CP097253]
2207593
2207518
-
Phe
GAA
-
¡û
>W2110762765
RCVQ01000003
Alphaproteobacteria
Roseomonas sp. KE0001 [RCVQ]
443109
443034
-
Phe
GAA
[ENA]
¡û
>C231536637
CP110774
Alphaproteobacteria
Acidocella sp. MX-AZ03 [CP110774]
1231329
1231254
-
Phe
GAA
-
¡û
>C231570006
CP115851
Alphaproteobacteria
Roseomonas cervicalis PL22-11A [CP115851]
1266293
1266218
-
Phe
GAA
-
¡û
>W10119147
ADVL01000156
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
15609
15534
-
Phe
GAA
[ENA]
¡û
>W2130010009
JAAEDJ010000121
Alphaproteobacteria
Roseomonas alkaliterrae LMG 31230 [JAAEDJ]
409
484
+
Phe
GAA
[ENA]
¡û
>W2130013135
JACADR010000067
Alphaproteobacteria
Roseomonas sp. OP-27 [JACADR]
19045
18970
-
Phe
GAA
[ENA]
¡û
>W2310025415
BSOO01000023
Alphaproteobacteria
Sphingomonas astaxanthinifaciens NBRC 102146 [BSOO]
29644
29569
-
Phe
GAA
[ENA]
¡û
>C10107549
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
2782243
2782168
-
Phe
GAA
[Ensembl]
¡û
>WENV11100464
AERA01011478
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
76
1
-
Phe
GAA
[ENA]
¡û
>W11125367
ADVL01000156
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
15609
15534
-
Phe
GAA
[ENA]
¡û
>W1511569439
LAJY01000184
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
379
454
+
Phe
GAA
[ENA]
¡û
>W11181082
AGIS01000001
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
692495
692570
+
Phe
GAA
[ENA]
¡û
>W121009581
AGEZ01000097
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
12564
12489
-
Phe
GAA
[ENA]
¡û
>C131015822
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
2905327
2905252
-
Phe
GAA
[Ensembl]
¡û
>W1610731974
LMJW01000016
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
327323
327398
+
Phe
GAA
[ENA]
¡û
>W1610753813
LNEW01000078
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
51314
51239
-
Phe
GAA
[ENA]
¡û
>W1610753986
LNFA01000260
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
10830
10905
+
Phe
GAA
[ENA]
¡û
>W1610990977
LWQU01000194
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
7518
7593
+
Phe
GAA
[ENA]
¡û
>W1710544019
FOAN01000002
Alphaproteobacteria
Bosea lupini [FOAN]
4599
4524
-
Phe
GAA
[ENA]
¡û
>W1710579331
FPCH01000001
Alphaproteobacteria
Hyphomicrobium facile [FPCH]
505450
505525
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK