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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259978 (16 seq.)
>WENV180116165
OAPT01161379
[OAPT] marine metagenome; seawater
359
284
-
Val
TAC
[ENA]
¡û
>W141236655
BBIO01000004
Alphaproteobacteria
Tepidicaulis marinus MA2 [BBIO]
98719
98644
-
Val
TAC
[ENA]
¡û
>WENV170962172
MRWF01007840
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
9490
9565
+
Val
TAC
[ENA]
¡û
>WENV170962539
MRWF01019926
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
42374
42299
-
Val
TAC
[ENA]
¡û
>WENV170963083
MRWG01000009
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
141528
141453
-
Val
TAC
[ENA]
¡û
>WENV170963539
MRWG01000273
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
500513
500438
-
Val
TAC
[ENA]
¡û
>W141817610
JQKX01000003
Alphaproteobacteria
Thermopetrobacter sp. TC1 [JQKX]
21588
21513
-
Val
TAC
[ENA]
¡û
>W1810110846
PHIG01000032
Alphaproteobacteria
Minwuia thermotolerans SY3-13 [PHIG]
256525
256450
-
Val
TAC
[ENA]
¡û
>W1810138054
PIGG01000031
Alphaproteobacteria
Minwuia thermotolerans SY3-15 [PIGG]
256526
256451
-
Val
TAC
[ENA]
¡û
>W2011412900
REFL01000001
Alphaproteobacteria
Tepidicaulis sp. EA10 [REFL]
742420
742495
+
Val
TAC
[ENA]
¡û
>C211031010
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
3331861
3331936
+
Val
TAC
-
¡û
>C241250140
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
1167671
1167746
+
Val
TAC
-
¡û
>C241250187
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
1166923
1166998
+
Val
TAC
-
¡û
>C241250261
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
4204584
4204509
-
Val
TAC
-
¡û
>C241250285
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
2108875
2108950
+
Val
TAC
-
¡û
>C161094026
CP016093
Alphaproteobacteria
Rhizobiales bacterium NRL2 [CP016093]
2258970
2259045
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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