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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260009 (32 seq.)
>W131223238
AUBY01000003
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
181185
181260
+
Trp
CCA
[ENA]
¡û
>W131223294
AUBY01000039
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
12387
12312
-
Trp
CCA
[ENA]
¡û
>W131223334
AUBZ01000022
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
62400
62325
-
Trp
CCA
[ENA]
¡û
>W131223355
AUBZ01000053
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
17628
17553
-
Trp
CCA
[ENA]
¡û
>W131241527
BARX01000044
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
20686
20761
+
Trp
CCA
[ENA]
¡û
>W131241533
BARX01000053
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
10362
10287
-
Trp
CCA
[ENA]
¡û
>WENV170023748
BCQL01002215
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1626
1701
+
Trp
CCA
[ENA]
¡û
>W1910178258
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
684204
684129
-
Trp
CCA
[ENA]
¡û
>W1910178279
BJEQ01000014
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
71620
71545
-
Trp
CCA
[ENA]
¡û
>W1810154500
PIZM01000006
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
443724
443799
+
Trp
CCA
[ENA]
¡û
>W2010091597
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
684204
684129
-
Trp
CCA
[ENA]
¡û
>W2010091618
BJEQ01000014
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
71620
71545
-
Trp
CCA
[ENA]
¡û
>W2011858199
UNRE01000013
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
544
619
+
Trp
CCA
[ENA]
¡û
>W2011858201
UNRE01000014
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
21060
21135
+
Trp
CCA
[ENA]
¡û
>W2012330198
WHRY01000004
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
394326
394401
+
Trp
CCA
[ENA]
¡û
>W2012330224
WHRY01000013
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
21631
21706
+
Trp
CCA
[ENA]
¡û
>W2110016230
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
2729056
2729131
+
Trp
CCA
[ENA]
¡û
>W2110016267
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
1116792
1116717
-
Trp
CCA
[ENA]
¡û
>W2110020823
BMDY01000035
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
1027
952
-
Trp
CCA
[ENA]
¡û
>W2110020824
BMDY01000038
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
17246
17171
-
Trp
CCA
[ENA]
¡û
>C211007630
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
4168681
4168606
-
Trp
CCA
-
¡û
>C211007631
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
4150418
4150343
-
Trp
CCA
-
¡û
>C211007636
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3581936
3581861
-
Trp
CCA
-
¡û
>C211007725
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
4055307
4055232
-
Trp
CCA
-
¡û
>C211007730
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3471900
3471825
-
Trp
CCA
-
¡û
>C231249141
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
823641
823716
+
Trp
CCA
-
¡û
>C231249194
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
4212484
4212409
-
Trp
CCA
-
¡û
>C231370396
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
488290
488365
+
Trp
CCA
-
¡û
>C231370428
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
3526484
3526409
-
Trp
CCA
-
¡û
>W2310026590
BSPQ01000005
Gammaproteobacteria
Psychromonas marina NBRC 103166 [BSPQ]
368627
368702
+
Trp
CCA
[ENA]
¡û
>C161049650
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
3971960
3972035
+
Trp
CCA
-
¡û
>C161049670
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
2068665
2068590
-
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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