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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260026 (104 seq.)
>W1710777909
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
879031
878956
-
Lys
TTT
[ENA]
¡û
>W1710777910
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
878796
878721
-
Lys
TTT
[ENA]
¡û
>W1711303111
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
690284
690209
-
Lys
TTT
[ENA]
¡û
>W1711303112
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
690049
689974
-
Lys
TTT
[ENA]
¡û
>W1711682991
MRYC01000004
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
197239
197314
+
Lys
TTT
[ENA]
¡û
>W1711682992
MRYC01000004
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
197517
197592
+
Lys
TTT
[ENA]
¡û
>C171019131
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
2800076
2800001
-
Lys
TTT
-
¡û
>C171019132
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
2799798
2799723
-
Lys
TTT
-
¡û
>WENV180101022
OAOU01000001
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
562042
562117
+
Lys
TTT
[ENA]
¡û
>WENV180101023
OAOU01000001
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
562277
562352
+
Lys
TTT
[ENA]
¡û
>W141233986
BAWG01000010
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
11123
11048
-
Lys
TTT
[ENA]
¡û
>W141233987
BAWG01000010
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
10886
10811
-
Lys
TTT
[ENA]
¡û
>W141234019
BAWH01000015
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
8907
8832
-
Lys
TTT
[ENA]
¡û
>W141234020
BAWH01000015
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
8672
8597
-
Lys
TTT
[ENA]
¡û
>WENV182542086
OJAV01002272
[OJAV] seawater metagenome; Sea water
2403
2478
+
Lys
TTT
[ENA]
¡û
>WENV182549788
OJBZ01000022
[OJBZ] seawater metagenome; Sea water
11515
11440
-
Lys
TTT
[ENA]
¡û
>WENV182562331
OJDZ01000933
[OJDZ] seawater metagenome; Sea water
12092
12017
-
Lys
TTT
[ENA]
¡û
>WENV170014611
AYSL01000627
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
338
263
-
Lys
TTT
[ENA]
¡û
>WENV170014612
AYSL01000627
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
126
51
-
Lys
TTT
[ENA]
¡û
>WENV170242184
CEQO01036468
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
291
366
+
Lys
TTT
[ENA]
¡û
>WENV170242185
CEQO01036468
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
502
577
+
Lys
TTT
[ENA]
¡û
>WENV170674105
LAZR01044603
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1190
1115
-
Lys
TTT
[ENA]
¡û
>W1810155460
PJAS01000055
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
63162
63237
+
Lys
TTT
[ENA]
¡û
>W1810155461
PJAS01000055
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
63397
63472
+
Lys
TTT
[ENA]
¡û
>W1810155500
PJAT01000085
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
90459
90534
+
Lys
TTT
[ENA]
¡û
>W1810155501
PJAT01000085
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
90694
90769
+
Lys
TTT
[ENA]
¡û
>W1810156173
PJBD01000012
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
44464
44539
+
Lys
TTT
[ENA]
¡û
>W1810156174
PJBD01000012
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
44699
44774
+
Lys
TTT
[ENA]
¡û
>W1810156344
PJBF01000059
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
8158
8083
-
Lys
TTT
[ENA]
¡û
>W1810156345
PJBF01000059
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
7923
7848
-
Lys
TTT
[ENA]
¡û
>W1810156442
PJBH01000068
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
294797
294872
+
Lys
TTT
[ENA]
¡û
>W1810156443
PJBH01000068
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
295032
295107
+
Lys
TTT
[ENA]
¡û
>W1810157244
PJBU01000074
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
78416
78491
+
Lys
TTT
[ENA]
¡û
>W1810157245
PJBU01000074
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
78651
78726
+
Lys
TTT
[ENA]
¡û
>W1810692666
QLKS01000002
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
11508
11433
-
Lys
TTT
[ENA]
¡û
>W1810692667
QLKS01000002
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
11250
11175
-
Lys
TTT
[ENA]
¡û
>W2010569961
JAATTV010000006
Gammaproteobacteria
Psychrobacter sp. BI730 [JAATTV]
8939
8864
-
Lys
TTT
[ENA]
¡û
>W2010569962
JAATTV010000006
Gammaproteobacteria
Psychrobacter sp. BI730 [JAATTV]
8704
8629
-
Lys
TTT
[ENA]
¡û
>W2010688605
JACGUN010000050
Gammaproteobacteria
Psychrobacter sp. Urea-trap-20 [JACGUN]
115361
115436
+
Lys
TTT
[ENA]
¡û
>W2010688606
JACGUN010000050
Gammaproteobacteria
Psychrobacter sp. Urea-trap-20 [JACGUN]
115596
115671
+
Lys
TTT
[ENA]
¡û
>W2010688664
JACGUO010000065
Gammaproteobacteria
Psychrobacter sp. Urea-trap-19 [JACGUO]
8603
8528
-
Lys
TTT
[ENA]
¡û
>W2010688665
JACGUO010000065
Gammaproteobacteria
Psychrobacter sp. Urea-trap-19 [JACGUO]
8368
8293
-
Lys
TTT
[ENA]
¡û
>W2010688715
JACGUP010000070
Gammaproteobacteria
Psychrobacter sp. Urea-trap-18 [JACGUP]
8603
8528
-
Lys
TTT
[ENA]
¡û
>W2010688716
JACGUP010000070
Gammaproteobacteria
Psychrobacter sp. Urea-trap-18 [JACGUP]
8368
8293
-
Lys
TTT
[ENA]
¡û
>W2010688753
JACGUQ010000072
Gammaproteobacteria
Psychrobacter sp. Urea-trap-16 [JACGUQ]
8603
8528
-
Lys
TTT
[ENA]
¡û
>W2010688754
JACGUQ010000072
Gammaproteobacteria
Psychrobacter sp. Urea-trap-16 [JACGUQ]
8368
8293
-
Lys
TTT
[ENA]
¡û
>W2011646916
SNVH01000004
Gammaproteobacteria
Psychrobacter sp. 230 [SNVH]
7071
6996
-
Lys
TTT
[ENA]
¡û
>W2011646917
SNVH01000004
Gammaproteobacteria
Psychrobacter sp. 230 [SNVH]
6836
6761
-
Lys
TTT
[ENA]
¡û
>W2110050750
BMZR01000007
Gammaproteobacteria
Psychrobacter glaciei KCTC 42280 [BMZR]
10560
10485
-
Lys
TTT
[ENA]
¡û
>W2110050751
BMZR01000007
Gammaproteobacteria
Psychrobacter glaciei KCTC 42280 [BMZR]
10324
10249
-
Lys
TTT
[ENA]
¡û
>W2110105727
CAJGYR010000002
Gammaproteobacteria
Psychrobacter adeliensis [CAJGYR]
338681
338756
+
Lys
TTT
[ENA]
¡û
>W2110105728
CAJGYR010000002
Gammaproteobacteria
Psychrobacter adeliensis [CAJGYR]
338939
339014
+
Lys
TTT
[ENA]
¡û
>W2110106648
CAJGZN010000001
Gammaproteobacteria
Psychrobacter immobilis [CAJGZN]
43484
43409
-
Lys
TTT
[ENA]
¡û
>W2110106649
CAJGZN010000001
Gammaproteobacteria
Psychrobacter immobilis [CAJGZN]
43249
43174
-
Lys
TTT
[ENA]
¡û
>W2110106725
CAJGZO010000014
Gammaproteobacteria
Psychrobacter glaciei [CAJGZO]
4034
4109
+
Lys
TTT
[ENA]
¡û
>W2110106726
CAJGZO010000014
Gammaproteobacteria
Psychrobacter glaciei [CAJGZO]
4270
4345
+
Lys
TTT
[ENA]
¡û
>W2110106960
CAJGZU010000002
Gammaproteobacteria
Psychrobacter immobilis [CAJGZU]
269435
269510
+
Lys
TTT
[ENA]
¡û
>W2110106961
CAJGZU010000002
Gammaproteobacteria
Psychrobacter immobilis [CAJGZU]
269670
269745
+
Lys
TTT
[ENA]
¡û
>W2110107606
CAJHAI010000012
Gammaproteobacteria
Psychrobacter marincola [CAJHAI]
11530
11455
-
Lys
TTT
[ENA]
¡û
>W2110107607
CAJHAI010000012
Gammaproteobacteria
Psychrobacter marincola [CAJHAI]
11272
11197
-
Lys
TTT
[ENA]
¡û
>W2110107719
CAJHAL010000010
Gammaproteobacteria
Psychrobacter nivimaris [CAJHAL]
77459
77534
+
Lys
TTT
[ENA]
¡û
>W2110107720
CAJHAL010000010
Gammaproteobacteria
Psychrobacter nivimaris [CAJHAL]
77693
77768
+
Lys
TTT
[ENA]
¡û
>W2110107758
CAJHAM010000006
Gammaproteobacteria
Psychrobacter oceani [CAJHAM]
7561
7486
-
Lys
TTT
[ENA]
¡û
>W2110107759
CAJHAM010000006
Gammaproteobacteria
Psychrobacter oceani [CAJHAM]
7283
7208
-
Lys
TTT
[ENA]
¡û
>W2110107865
CAJHAO010000006
Gammaproteobacteria
Psychrobacter pacificensis [CAJHAO]
123536
123611
+
Lys
TTT
[ENA]
¡û
>W2110107866
CAJHAO010000006
Gammaproteobacteria
Psychrobacter pacificensis [CAJHAO]
123814
123889
+
Lys
TTT
[ENA]
¡û
>W2110108002
CAJHAR010000030
Gammaproteobacteria
Psychrobacter piscatorii [CAJHAR]
36840
36915
+
Lys
TTT
[ENA]
¡û
>W2110108003
CAJHAR010000030
Gammaproteobacteria
Psychrobacter piscatorii [CAJHAR]
37114
37189
+
Lys
TTT
[ENA]
¡û
>W2110108029
CAJHAS010000002
Gammaproteobacteria
Psychrobacter proteolyticus [CAJHAS]
646725
646800
+
Lys
TTT
[ENA]
¡û
>W2110108030
CAJHAS010000002
Gammaproteobacteria
Psychrobacter proteolyticus [CAJHAS]
646983
647058
+
Lys
TTT
[ENA]
¡û
>W2110108861
CAJHBL010000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [CAJHBL]
729524
729599
+
Lys
TTT
[ENA]
¡û
>W2110108862
CAJHBL010000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [CAJHBL]
729759
729834
+
Lys
TTT
[ENA]
¡û
>W2110108991
CAJHBO010000003
Gammaproteobacteria
Psychrobacter sp. Pi2-1 [CAJHBO]
9352
9277
-
Lys
TTT
[ENA]
¡û
>W2110108992
CAJHBO010000003
Gammaproteobacteria
Psychrobacter sp. Pi2-1 [CAJHBO]
9117
9042
-
Lys
TTT
[ENA]
¡û
>W2110109051
CAJHBP010000017
Gammaproteobacteria
Psychrobacter sp. Pi2-51 [CAJHBP]
62088
62163
+
Lys
TTT
[ENA]
¡û
>W2110109052
CAJHBP010000017
Gammaproteobacteria
Psychrobacter sp. Pi2-51 [CAJHBP]
62324
62399
+
Lys
TTT
[ENA]
¡û
>W2110109185
CAJHBS010000033
Gammaproteobacteria
Psychrobacter sp. Pi2-52 [CAJHBS]
4039
3964
-
Lys
TTT
[ENA]
¡û
>W2110109186
CAJHBS010000033
Gammaproteobacteria
Psychrobacter sp. Pi2-52 [CAJHBS]
3804
3729
-
Lys
TTT
[ENA]
¡û
>W2110316198
JADGIN010000012
Gammaproteobacteria
Psychrobacter sp. NG27 [JADGIN]
10260
10185
-
Lys
TTT
[ENA]
¡û
>W2110316199
JADGIN010000012
Gammaproteobacteria
Psychrobacter sp. NG27 [JADGIN]
10025
9950
-
Lys
TTT
[ENA]
¡û
>W2110319200
JADHDA010000001
Gammaproteobacteria
Psychrobacter sp. NG254 [JADHDA]
9820
9745
-
Lys
TTT
[ENA]
¡û
>W2110319201
JADHDA010000001
Gammaproteobacteria
Psychrobacter sp. NG254 [JADHDA]
9585
9510
-
Lys
TTT
[ENA]
¡û
>W2110326825
JADKLX010000002
Gammaproteobacteria
Psychrobacter sp. N25K4-3-2 [JADKLX]
682284
682359
+
Lys
TTT
[ENA]
¡û
>W2110326826
JADKLX010000002
Gammaproteobacteria
Psychrobacter sp. N25K4-3-2 [JADKLX]
682520
682595
+
Lys
TTT
[ENA]
¡û
>W2110398185
JADYWX010000002
Gammaproteobacteria
Psychrobacter sp. SWN149 [JADYWX]
9433
9358
-
Lys
TTT
[ENA]
¡û
>W2110398186
JADYWX010000002
Gammaproteobacteria
Psychrobacter sp. SWN149 [JADYWX]
9198
9123
-
Lys
TTT
[ENA]
¡û
>W2110456279
JAEVFH010000004
Gammaproteobacteria
Psychrobacter pacificensis E23 [JAEVFH]
265752
265827
+
Lys
TTT
[ENA]
¡û
>W2110456280
JAEVFH010000004
Gammaproteobacteria
Psychrobacter pacificensis E23 [JAEVFH]
265963
266038
+
Lys
TTT
[ENA]
¡û
>W2110560628
JAGKSC010000007
Gammaproteobacteria
Psychrobacter sp. K31L [JAGKSC]
113676
113751
+
Lys
TTT
[ENA]
¡û
>W2110560629
JAGKSC010000007
Gammaproteobacteria
Psychrobacter sp. K31L [JAGKSC]
113912
113987
+
Lys
TTT
[ENA]
¡û
>C211001711
AP019516
Gammaproteobacteria
Psychrobacter sp. KH172YL61 [AP019516]
2402137
2402212
+
Lys
TTT
-
¡û
>C211001712
AP019516
Gammaproteobacteria
Psychrobacter sp. KH172YL61 [AP019516]
2402415
2402490
+
Lys
TTT
-
¡û
>C211132623
CP060390
Gammaproteobacteria
Psychrobacter sp. KCTC 72983 [CP060390]
503362
503437
+
Lys
TTT
-
¡û
>C211132624
CP060390
Gammaproteobacteria
Psychrobacter sp. KCTC 72983 [CP060390]
503573
503648
+
Lys
TTT
-
¡û
>C211152444
CP061739
Gammaproteobacteria
Psychrobacter sp. 28M-43 [CP061739]
734503
734428
-
Lys
TTT
-
¡û
>C211152445
CP061739
Gammaproteobacteria
Psychrobacter sp. 28M-43 [CP061739]
734268
734193
-
Lys
TTT
-
¡û
>W2310025138
BSOK01000007
Gammaproteobacteria
Psychrobacter pacificensis NBRC 103191 [BSOK]
74182
74257
+
Lys
TTT
[ENA]
¡û
>W2310025139
BSOK01000007
Gammaproteobacteria
Psychrobacter pacificensis NBRC 103191 [BSOK]
74460
74535
+
Lys
TTT
[ENA]
¡û
>W121043507
AHVZ01000017
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
34194
34119
-
Lys
TTT
[ENA]
¡û
>W121043508
AHVZ01000017
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
33966
33891
-
Lys
TTT
[ENA]
¡û
>W1610642095
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
879031
878956
-
Lys
TTT
[ENA]
¡û
>W1610642096
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
878796
878721
-
Lys
TTT
[ENA]
¡û
>W1710513818
FNAL01000014
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
74390
74465
+
Lys
TTT
[ENA]
¡û
>W1710513819
FNAL01000014
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
74668
74743
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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