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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260055 (71 seq.)
>W1711386908
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
475041
474966
-
Arg
ACG
[ENA]
¡û
>W131208638
ATIA01000066
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
125
50
-
Arg
ACG
[ENA]
¡û
>W1711505563
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
1067891
1067816
-
Arg
ACG
[ENA]
¡û
>w013981
AAOB01000012
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
49564
49641
+
Arg
ACG
[ENA]
¡û
>WENV180017301
FSWR01000075
[FSWR] metagenome; soil
7420
7493
+
Arg
ACG
[ENA]
¡û
>WENV180017672
FSXL01000592
[FSXL] metagenome; soil
7857
7784
-
Arg
ACG
[ENA]
¡û
>WENV180029003
FTJI01002183
[FTJI] metagenome; soil
55
130
+
Arg
ACG
[ENA]
¡û
>WENV180029022
FTJI01004664
[FTJI] metagenome; soil
860
787
-
Arg
ACG
[ENA]
¡û
>WENV180029238
FTJI01252454
[FTJI] metagenome; soil
1128
1053
-
Arg
ACG
[ENA]
¡û
>WENV180029334
FTJI01739710
[FTJI] metagenome; soil
378
453
+
Arg
ACG
[ENA]
¡û
>WENV180034036
FTKM01191139
[FTKM] metagenome; soil
76
3
-
Arg
ACG
[ENA]
¡û
>WENV180034527
FTKR01002238
[FTKR] metagenome; soil
55
130
+
Arg
ACG
[ENA]
¡û
>WENV180034545
FTKR01004658
[FTKR] metagenome; soil
860
787
-
Arg
ACG
[ENA]
¡û
>WENV180034763
FTKR01250107
[FTKR] metagenome; soil
1128
1053
-
Arg
ACG
[ENA]
¡û
>WENV180034844
FTKR01664095
[FTKR] metagenome; soil
378
453
+
Arg
ACG
[ENA]
¡û
>WENV180304265
OBJH01188420
[OBJH] soil metagenome; soil
127
202
+
Arg
ACG
[ENA]
¡û
>WENV180304462
OBJI01062192
[OBJI] soil metagenome; soil
155
230
+
Arg
ACG
[ENA]
¡û
>WENV181167454
OEIU01029387
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
76
1
-
Arg
ACG
[ENA]
¡û
>WENV181222654
OFDC01000052
[OFDC] hot springs metagenome; Water
97825
97898
+
Arg
ACG
[ENA]
¡û
>WENV183746594
POYE01031478
[POYE] biofilm metagenome; steel pipe from biofilm reactor
2367
2442
+
Arg
ACG
[ENA]
¡û
>WENV170700527
LIDZ01015004
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
21548
21475
-
Arg
ACG
[ENA]
¡û
>C181144002
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
111419
111344
-
Arg
ACG
-
¡û
>C191139330
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
2310005
2310080
+
Arg
ACG
-
¡û
>W141809736
JPRS01000717
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
217
290
+
Arg
ACG
[ENA]
¡û
>W1911497872
OCST01000002
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
185166
185241
+
Arg
ACG
[ENA]
¡û
>W1810090218
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
4204
4129
-
Arg
ACG
[ENA]
¡û
>SRA1002996
SRR002326.144467
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
18
93
+
Arg
ACG
[SRA]
>W1810169231
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
1712040
1712113
+
Arg
ACG
[ENA]
¡û
>SRA1003981
SRR002328.70901
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
64
139
+
Arg
ACG
[SRA]
>SRA1004284
SRR002328.246928
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
156
81
-
Arg
ACG
[SRA]
>W1810364721
PVTL01000008
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
47850
47923
+
Arg
ACG
[ENA]
¡û
>W1810568847
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
1906583
1906508
-
Arg
ACG
[ENA]
¡û
>W1810577909
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
740739
740812
+
Arg
ACG
[ENA]
¡û
>W2010471670
JAAGWZ010000005
Actinomycetota
Galbitalea soli NBRC 108727 [JAAGWZ]
190006
190081
+
Arg
ACG
[ENA]
¡û
>W2010498983
JAALGE010000080
Actinomycetota
Marisediminicola sp. SM7 A14 [JAALGE]
5384
5459
+
Arg
ACG
[ENA]
¡û
>W2010672232
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
217287
217212
-
Arg
ACG
[ENA]
¡û
>W2010674722
JACCFN010000001
Actinomycetota
Galbitalea soli DSM 105515 [JACCFN]
401361
401436
+
Arg
ACG
[ENA]
¡û
>W2010694697
JACHBP010000001
Actinomycetota
Cryobacterium mesophilum DSM 19267 [JACHBP]
1612429
1612502
+
Arg
ACG
[ENA]
¡û
>W2010694743
JACHBQ010000001
Actinomycetota
Cryobacterium roopkundense DSM 21065 [JACHBQ]
4270162
4270235
+
Arg
ACG
[ENA]
¡û
>W2010709729
JACHMJ010000001
Actinomycetota
Conyzicola lurida DSM 105784 [JACHMJ]
3108051
3107976
-
Arg
ACG
[ENA]
¡û
>W2011158776
OCST01000002
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
185166
185241
+
Arg
ACG
[ENA]
¡û
>W2011404142
RCWI01000001
Actinomycetota
Salinibacterium amurskyense JCM 12362 [RCWI]
4384
4309
-
Arg
ACG
[ENA]
¡û
>W2011600612
SISG01000001
Actinomycetota
Glaciihabitans sp. RP-3-7 [SISG]
2763044
2763118
+
Arg
ACG
[ENA]
¡û
>W2011657632
SODI01000001
Actinomycetota
Cryobacterium psychrophilum DSM 4854 [SODI]
2187988
2188062
+
Arg
ACG
[ENA]
¡û
>W2011659892
SOFI01000003
Actinomycetota
Cryobacterium mesophilum CGMCC 1.10440 [SOFI]
1660078
1660151
+
Arg
ACG
[ENA]
¡û
>W2011662614
SOHQ01000026
Actinomycetota
Cryobacterium psychrophilum CGMCC 1.4292 [SOHQ]
44716
44790
+
Arg
ACG
[ENA]
¡û
>W2012020477
VFOM01000003
Actinomycetota
Homoserinimonas aerilata DSM 26477 [VFOM]
18925
19000
+
Arg
ACG
[ENA]
¡û
>W2012023024
VFRA01000001
Actinomycetota
Rhodoglobus vestalii DSM 21947 [VFRA]
1252330
1252255
-
Arg
ACG
[ENA]
¡û
>W2012125095
VRMG01000009
Actinomycetota
Glaciihabitans sp. CHu50b-6-2 [VRMG]
412302
412377
+
Arg
ACG
[ENA]
¡û
>W2110023507
BMGB01000001
Actinomycetota
Conyzicola nivalis CGMCC 1.12813 [BMGB]
2215471
2215396
-
Arg
ACG
[ENA]
¡û
>W2110029902
BMLC01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.5381 [BMLC]
1251019
1250944
-
Arg
ACG
[ENA]
¡û
>W2110050859
BMZU01000001
Actinomycetota
Salinibacterium amurskyense KCTC 9931 [BMZU]
1897423
1897498
+
Arg
ACG
[ENA]
¡û
>W2110161142
JAAVUZ010000021
Actinomycetota
Glaciihabitans sp. dw_435 [JAAVUZ]
31457
31530
+
Arg
ACG
[ENA]
¡û
>W2110363694
JADOVH010000007
Actinomycetota
Frigoribacterium sp. CG_9.8 [JADOVH]
58837
58764
-
Arg
ACG
[ENA]
¡û
>W2110397084
JADYWE010000001
Actinomycetota
Salinibacterium sp. NK8237 [JADYWE]
2094005
2094080
+
Arg
ACG
[ENA]
¡û
>W2110397126
JADYWF010000001
Actinomycetota
Salinibacterium sp. NG253 [JADYWF]
2035850
2035925
+
Arg
ACG
[ENA]
¡û
>W2110397168
JADYWG010000001
Actinomycetota
Salinibacterium sp. NG22 [JADYWG]
1958365
1958440
+
Arg
ACG
[ENA]
¡û
>W2110397227
JADYWH010000001
Actinomycetota
Salinibacterium sp. NSLL17 [JADYWH]
21271
21196
-
Arg
ACG
[ENA]
¡û
>W2110397269
JADYWI010000001
Actinomycetota
Salinibacterium sp. NSLL150 [JADYWI]
21271
21196
-
Arg
ACG
[ENA]
¡û
>W2110397311
JADYWJ010000001
Actinomycetota
Salinibacterium sp. NSLL16 [JADYWJ]
21271
21196
-
Arg
ACG
[ENA]
¡û
>W2110397354
JADYWK010000001
Actinomycetota
Salinibacterium sp. NSLL35 [JADYWK]
21271
21196
-
Arg
ACG
[ENA]
¡û
>W2110398026
JADYWT010000001
Actinomycetota
Salinibacterium sp. SWN1162 [JADYWT]
11407
11332
-
Arg
ACG
[ENA]
¡û
>W2110398068
JADYWU010000001
Actinomycetota
Salinibacterium sp. SWN167 [JADYWU]
7343
7268
-
Arg
ACG
[ENA]
¡û
>W2110398092
JADYWV010000001
Actinomycetota
Salinibacterium sp. SWN139 [JADYWV]
10704
10629
-
Arg
ACG
[ENA]
¡û
>W2110398152
JADYWW010000001
Actinomycetota
Salinibacterium sp. SWN248 [JADYWW]
16311
16236
-
Arg
ACG
[ENA]
¡û
>W2110438092
JAEPES010000006
Actinomycetota
Lacisediminihabitans changchengi G11-30 [JAEPES]
43909
43982
+
Arg
ACG
[ENA]
¡û
>C211052115
CP040814
Actinomycetota
Salinibacterium sp. M195 [CP040814]
249215
249140
-
Arg
ACG
-
¡û
>C211060563
CP043653
Actinomycetota
Glaciihabitans sp. INWT7 [CP043653]
215294
215367
+
Arg
ACG
-
¡û
>C241017626
CP017146
Actinomycetota
Marisediminicola antarctica ZS314 [CP017146]
214261
214188
-
Arg
ACG
-
¡û
>W1511317431
JPXF01000050
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
29102
29029
-
Arg
ACG
[ENA]
¡û
>W121043553
AHWA01000004
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
1377417
1377492
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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