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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260056 (41 seq.)
>W1710874699
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
809885
809810
-
Glu
CTC
[ENA]
¡û
>WENV180016055
FSTY01000416
[FSTY] metagenome; soil
10726
10799
+
Glu
CTC
[ENA]
¡û
>WENV180016070
FSTY01000686
[FSTY] metagenome; soil
2639
2564
-
Glu
CTC
[ENA]
¡û
>WENV180017263
FSWR01000028
[FSWR] metagenome; soil
7508
7435
-
Glu
CTC
[ENA]
¡û
>WENV180017294
FSWR01000065
[FSWR] metagenome; soil
7353
7426
+
Glu
CTC
[ENA]
¡û
>WENV180017649
FSXL01000255
[FSXL] metagenome; soil
8976
9049
+
Glu
CTC
[ENA]
¡û
>WENV180017823
FSXQ01003668
[FSXQ] metagenome; soil
71227
71300
+
Glu
CTC
[ENA]
¡û
>WENV180023601
FTIC01119372
[FTIC] metagenome; soil
193
118
-
Glu
CTC
[ENA]
¡û
>WENV180023820
FTIF01000925
[FTIF] metagenome; soil
28308
28381
+
Glu
CTC
[ENA]
¡û
>WENV180026456
FTIT01303690
[FTIT] metagenome; soil
147
74
-
Glu
CTC
[ENA]
¡û
>WENV180029120
FTJI01054602
[FTJI] metagenome; soil
2
75
+
Glu
CTC
[ENA]
¡û
>WENV180033492
FTKK01081780
[FTKK] metagenome; soil
3162
3087
-
Glu
CTC
[ENA]
¡û
>WENV180034641
FTKR01054942
[FTKR] metagenome; soil
2
75
+
Glu
CTC
[ENA]
¡û
>WENV170561758
CZCA01026798
[CZCA] anaerobic digester metagenome; anaerobic digester
172
97
-
Glu
CTC
[ENA]
¡û
>C181143987
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1909239
1909166
-
Glu
CTC
-
¡û
>C191011723
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
1999797
1999724
-
Glu
CTC
-
¡û
>W1810169250
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
909649
909576
-
Glu
CTC
[ENA]
¡û
>SRA1003421
SRR002326.456707
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
147
220
+
Glu
CTC
[SRA]
>SRA1003677
SRR002327.115614
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
55
128
+
Glu
CTC
[SRA]
>W1810364705
PVTL01000003
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
379239
379312
+
Glu
CTC
[ENA]
¡û
>W1810568854
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
894794
894721
-
Glu
CTC
[ENA]
¡û
>W2010471648
JAAGWZ010000002
Actinomycetota
Galbitalea soli NBRC 108727 [JAAGWZ]
604972
605047
+
Glu
CTC
[ENA]
¡û
>W2010674727
JACCFN010000001
Actinomycetota
Galbitalea soli DSM 105515 [JACCFN]
1007547
1007622
+
Glu
CTC
[ENA]
¡û
>W2010694716
JACHBP010000001
Actinomycetota
Cryobacterium mesophilum DSM 19267 [JACHBP]
810038
809965
-
Glu
CTC
[ENA]
¡û
>W2010709737
JACHMJ010000001
Actinomycetota
Conyzicola lurida DSM 105784 [JACHMJ]
2373637
2373564
-
Glu
CTC
[ENA]
¡û
>W2011441969
RJUO01000001
Actinomycetota
Frondihabitans sp. PhB188 [RJUO]
880043
880116
+
Glu
CTC
[ENA]
¡û
>W2011453517
RKQM01000004
Actinomycetota
Frondihabitans sp. PhB153 [RKQM]
200625
200698
+
Glu
CTC
[ENA]
¡û
>W2011454145
RKQW01000004
Actinomycetota
Frondihabitans sp. PhB161 [RKQW]
200690
200763
+
Glu
CTC
[ENA]
¡û
>W2011600594
SISG01000001
Actinomycetota
Glaciihabitans sp. RP-3-7 [SISG]
212600
212675
+
Glu
CTC
[ENA]
¡û
>W2011659911
SOFI01000003
Actinomycetota
Cryobacterium mesophilum CGMCC 1.10440 [SOFI]
857687
857614
-
Glu
CTC
[ENA]
¡û
>W2012020450
VFOM01000001
Actinomycetota
Homoserinimonas aerilata DSM 26477 [VFOM]
625877
625952
+
Glu
CTC
[ENA]
¡û
>W2012125089
VRMG01000008
Actinomycetota
Glaciihabitans sp. CHu50b-6-2 [VRMG]
296451
296378
-
Glu
CTC
[ENA]
¡û
>W2110023514
BMGB01000001
Actinomycetota
Conyzicola nivalis CGMCC 1.12813 [BMGB]
1579075
1579002
-
Glu
CTC
[ENA]
¡û
>W2110161130
JAAVUZ010000007
Actinomycetota
Glaciihabitans sp. dw_435 [JAAVUZ]
48784
48857
+
Glu
CTC
[ENA]
¡û
>W2110329655
JADKSF010000006
Actinomycetota
Frondihabitans sp. VKM Ac-2883 [JADKSF]
42636
42563
-
Glu
CTC
[ENA]
¡û
>W2110363659
JADOVH010000001
Actinomycetota
Frigoribacterium sp. CG_9.8 [JADOVH]
551866
551941
+
Glu
CTC
[ENA]
¡û
>W2110438065
JAEPES010000001
Actinomycetota
Lacisediminihabitans changchengi G11-30 [JAEPES]
280232
280159
-
Glu
CTC
[ENA]
¡û
>C211060587
CP043653
Actinomycetota
Glaciihabitans sp. INWT7 [CP043653]
2376345
2376270
-
Glu
CTC
-
¡û
>C241011912
AP027732
Actinomycetota
Frondihabitans sucicola NBRC 108728 [AP027732]
3228559
3228486
-
Glu
CTC
-
¡û
>C161073140
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
3279938
3279863
-
Glu
CTC
[Ensembl]
¡û
>W1610737045
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
809885
809810
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK