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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260173 (90 seq.)
>W1711169845
LVZK01000003
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
389871
389796
-
Lys
CTT
[ENA]
¡û
>W131001185
AGWM01000010
Actinomycetota
Actinotignum schaalii FB123-CNA-2 [AGWM]
48399
48474
+
Lys
CTT
[ENA]
¡û
>W131222627
AUBK01000013
Actinomycetota
Actinotignum schaalii DSM 15541 [AUBK]
19851
19924
+
Lys
CTT
[ENA]
¡û
>WENV180697485
ODDE01000829
[ODDE] human metagenome; G_DNA_Supragingival plaque
6418
6345
-
Lys
CTT
[ENA]
¡û
>WENV180726485
ODGU01000039
[ODGU] human metagenome; G_DNA_Supragingival plaque
28484
28557
+
Lys
CTT
[ENA]
¡û
>WENV180732573
ODGY01001520
[ODGY] human metagenome; G_DNA_Supragingival plaque
6412
6339
-
Lys
CTT
[ENA]
¡û
>WENV180733566
ODGZ01000227
[ODGZ] human metagenome; G_DNA_Supragingival plaque
15881
15808
-
Lys
CTT
[ENA]
¡û
>WENV180735556
ODHB01000015
[ODHB] human metagenome; G_DNA_Supragingival plaque
57466
57393
-
Lys
CTT
[ENA]
¡û
>WENV180738880
ODHD01000906
[ODHD] human metagenome; G_DNA_Supragingival plaque
3175
3248
+
Lys
CTT
[ENA]
¡û
>WENV180749740
ODHS01000003
[ODHS] human metagenome; G_DNA_Supragingival plaque
208148
208075
-
Lys
CTT
[ENA]
¡û
>WENV180777120
ODIL01000071
[ODIL] human metagenome; G_DNA_Supragingival plaque
19759
19832
+
Lys
CTT
[ENA]
¡û
>WENV180778010
ODIM01000266
[ODIM] human metagenome; G_DNA_Supragingival plaque
4285
4358
+
Lys
CTT
[ENA]
¡û
>WENV180781741
ODIP01002891
[ODIP] human metagenome; G_DNA_Supragingival plaque
3179
3252
+
Lys
CTT
[ENA]
¡û
>WENV180786970
ODIS01000655
[ODIS] human metagenome; G_DNA_Supragingival plaque
11421
11348
-
Lys
CTT
[ENA]
¡û
>WENV180795906
ODJB01000548
[ODJB] human metagenome; G_DNA_Supragingival plaque
16895
16822
-
Lys
CTT
[ENA]
¡û
>WENV180803949
ODJG01000198
[ODJG] human metagenome; G_DNA_Supragingival plaque
27641
27714
+
Lys
CTT
[ENA]
¡û
>WENV180813134
ODJO01000047
[ODJO] human metagenome; G_DNA_Supragingival plaque
81949
81876
-
Lys
CTT
[ENA]
¡û
>WENV180823204
ODJW01008740
[ODJW] human metagenome; G_DNA_Supragingival plaque
1828
1755
-
Lys
CTT
[ENA]
¡û
>WENV180833722
ODKD01000138
[ODKD] human metagenome; G_DNA_Supragingival plaque
19388
19461
+
Lys
CTT
[ENA]
¡û
>WENV180835733
ODKE01009993
[ODKE] human metagenome; G_DNA_Supragingival plaque
691
764
+
Lys
CTT
[ENA]
¡û
>WENV180843058
ODKN01000414
[ODKN] human metagenome; G_DNA_Supragingival plaque
11331
11404
+
Lys
CTT
[ENA]
¡û
>WENV180845425
ODKT01000358
[ODKT] human metagenome; G_DNA_Supragingival plaque
18959
19032
+
Lys
CTT
[ENA]
¡û
>WENV180860045
ODLD01013857
[ODLD] human metagenome; G_DNA_Supragingival plaque
1848
1775
-
Lys
CTT
[ENA]
¡û
>WENV180888234
ODMN01000265
[ODMN] human metagenome; G_DNA_Supragingival plaque
19046
19119
+
Lys
CTT
[ENA]
¡û
>WENV180927183
ODTM01000043
[ODTM] human metagenome; G_DNA_Supragingival plaque
30353
30426
+
Lys
CTT
[ENA]
¡û
>WENV180933256
ODTR01000003
[ODTR] human metagenome; G_DNA_Supragingival plaque
13181
13254
+
Lys
CTT
[ENA]
¡û
>WENV180934467
ODTS01000120
[ODTS] human metagenome; G_DNA_Subgingival plaque
18884
18811
-
Lys
CTT
[ENA]
¡û
>WENV180938278
ODTX01001190
[ODTX] human metagenome; G_DNA_Supragingival plaque
3193
3266
+
Lys
CTT
[ENA]
¡û
>WENV180943481
ODUC01000596
[ODUC] human metagenome; G_DNA_Supragingival plaque
98
25
-
Lys
CTT
[ENA]
¡û
>WENV180958466
ODUL01005496
[ODUL] human metagenome; G_DNA_Supragingival plaque
680
753
+
Lys
CTT
[ENA]
¡û
>WENV180964081
ODUO01000223
[ODUO] human metagenome; G_DNA_Supragingival plaque
18528
18455
-
Lys
CTT
[ENA]
¡û
>WENV180972735
ODUW01000095
[ODUW] human metagenome; G_DNA_Supragingival plaque
35427
35500
+
Lys
CTT
[ENA]
¡û
>WENV180972827
ODUW01000262
[ODUW] human metagenome; G_DNA_Supragingival plaque
3554
3481
-
Lys
CTT
[ENA]
¡û
>WENV180986626
ODVK01000198
[ODVK] human metagenome; G_DNA_Supragingival plaque
18753
18826
+
Lys
CTT
[ENA]
¡û
>WENV180998164
ODVT01000041
[ODVT] human metagenome; G_DNA_Buccal mucosa
48526
48453
-
Lys
CTT
[ENA]
¡û
>WENV181002278
ODVX01000166
[ODVX] human metagenome; G_DNA_Supragingival plaque
15895
15822
-
Lys
CTT
[ENA]
¡û
>WENV181007592
ODWE01000259
[ODWE] human metagenome; G_DNA_Supragingival plaque
28484
28557
+
Lys
CTT
[ENA]
¡û
>WENV181018939
ODWU01000227
[ODWU] human metagenome; G_DNA_Supragingival plaque
19186
19113
-
Lys
CTT
[ENA]
¡û
>WENV181029729
ODXF01002558
[ODXF] human metagenome; G_DNA_Supragingival plaque
1951
2024
+
Lys
CTT
[ENA]
¡û
>WENV181049690
ODYD01001458
[ODYD] human metagenome; G_DNA_Supragingival plaque
10075
10002
-
Lys
CTT
[ENA]
¡û
>WENV181063290
ODYP01000355
[ODYP] human metagenome; G_DNA_Supragingival plaque
8860
8787
-
Lys
CTT
[ENA]
¡û
>WENV181070002
OEAE01000110
[OEAE] human metagenome; G_DNA_Supragingival plaque
20912
20985
+
Lys
CTT
[ENA]
¡û
>WENV181075759
OEAP01000271
[OEAP] human metagenome; G_DNA_Supragingival plaque
22887
22960
+
Lys
CTT
[ENA]
¡û
>WENV181082499
OEAV01000017
[OEAV] human metagenome; G_DNA_Supragingival plaque
52514
52441
-
Lys
CTT
[ENA]
¡û
>WENV181084046
OEAV01053020
[OEAV] human metagenome; G_DNA_Supragingival plaque
334
407
+
Lys
CTT
[ENA]
¡û
>WENV181090325
OEBC01000192
[OEBC] human metagenome; G_DNA_Supragingival plaque
19986
20059
+
Lys
CTT
[ENA]
¡û
>WENV181106903
OEEI01000612
[OEEI] human metagenome; G_DNA_Supragingival plaque
16335
16262
-
Lys
CTT
[ENA]
¡û
>WENV181143350
OEHM01000506
[OEHM] human metagenome; G_DNA_Supragingival plaque
18546
18473
-
Lys
CTT
[ENA]
¡û
>WENV181145738
OEHQ01000038
[OEHQ] human metagenome; G_DNA_Supragingival plaque
50818
50745
-
Lys
CTT
[ENA]
¡û
>WENV181156071
OEIE01002722
[OEIE] human metagenome; G_DNA_Supragingival plaque
3183
3256
+
Lys
CTT
[ENA]
¡û
>WENV181159864
OEIK01000361
[OEIK] human metagenome; G_DNA_Supragingival plaque
20554
20481
-
Lys
CTT
[ENA]
¡û
>WENV181179966
OEJT01038400
[OEJT] human metagenome; G_DNA_Supragingival plaque
83
10
-
Lys
CTT
[ENA]
¡û
>WENV181180403
OEJU01000050
[OEJU] human metagenome; G_DNA_Supragingival plaque
27347
27420
+
Lys
CTT
[ENA]
¡û
>WENV181182108
OEJV01002462
[OEJV] human metagenome; G_DNA_Supragingival plaque
6409
6336
-
Lys
CTT
[ENA]
¡û
>WENV181414074
OGCK01213450
[OGCK] hot springs metagenome; hot spring sediment
162
87
-
Lys
CTT
[ENA]
¡û
>W141143100
AWSB01000006
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
45396
45469
+
Lys
CTT
[ENA]
¡û
>WENV183508545
OMHE01000440
[OMHE] human oral metagenome; human oral
502
575
+
Lys
CTT
[ENA]
¡û
>C181172308
CP029033
Actinomycetota
Actinobaculum sp. 313 [CP029033]
1997048
1996975
-
Lys
CTT
-
¡û
>C191178144
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
611416
611343
-
Lys
CTT
-
¡û
>W09134746
ACUY01000070
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
166524
166449
-
Lys
CTT
[ENA]
¡û
>W141727743
JNFL01000442
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
602
675
+
Lys
CTT
[ENA]
¡û
>W141727754
JNFL01000938
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
156
229
+
Lys
CTT
[ENA]
¡û
>W1910340113
FTLO01000030
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
102534
102461
-
Lys
CTT
[ENA]
¡û
>W1911653708
QDIE01000037
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
11895
11968
+
Lys
CTT
[ENA]
¡û
>W1810058301
PDJI01000004
Actinomycetota
Georgenia soli DSM 21838 [PDJI]
864026
863953
-
Lys
CTT
[ENA]
¡û
>W1810192509
PKMD01000001
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
571528
571455
-
Lys
CTT
[ENA]
¡û
>W1810192555
PKME01000001
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
576386
576313
-
Lys
CTT
[ENA]
¡û
>C151037570
CP008802
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP008802]
2152916
2152989
+
Lys
CTT
[Ensembl]
¡û
>W2010396743
FTLO01000030
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
102534
102461
-
Lys
CTT
[ENA]
¡û
>W2011237267
QDIE01000037
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
11895
11968
+
Lys
CTT
[ENA]
¡û
>W2011454385
RKRA01000001
Actinomycetota
Georgenia muralis DSM 14418 [RKRA]
2441628
2441701
+
Lys
CTT
[ENA]
¡û
>W2011479857
RQSN01000018
Actinomycetota
Actinobaculum sp. 352 [RQSN]
7701
7628
-
Lys
CTT
[ENA]
¡û
>W2012064521
VJXR01000032
Actinomycetota
Georgenia sp. Z446 [VJXR]
31681
31608
-
Lys
CTT
[ENA]
¡û
>W2012152421
VUKD01000002
Actinomycetota
Georgenia subflava CGMCC 1.12782 [VUKD]
635302
635375
+
Lys
CTT
[ENA]
¡û
>W2012152451
VUKE01000001
Actinomycetota
Georgenia ruanii JCM 15130 [VUKE]
254913
254986
+
Lys
CTT
[ENA]
¡û
>W2012152505
VUKF01000011
Actinomycetota
Georgenia thermotolerans NBRC 104148 [VUKF]
9152
9225
+
Lys
CTT
[ENA]
¡û
>W2012326267
WHJE01000062
Actinomycetota
Georgenia thermotolerans DSM 21501 [WHJE]
9097
9170
+
Lys
CTT
[ENA]
¡û
>W2012329631
WHPC01000038
Actinomycetota
Georgenia subflava JCM 19765 [WHPC]
22155
22228
+
Lys
CTT
[ENA]
¡û
>W2110503659
JAFIQW010000002
Actinomycetota
Herbiconiux sp. SYSU D00978 [JAFIQW]
442692
442767
+
Lys
CTT
[ENA]
¡û
>W1510015477
BBRA01000001
Actinomycetota
Demequina flava NBRC 105854 [BBRA]
379141
379066
-
Lys
CTT
[ENA]
¡û
>W1510015516
BBRB01000001
Actinomycetota
Demequina sediminicola NBRC 105855 [BBRB]
98667
98592
-
Lys
CTT
[ENA]
¡û
>W1510015745
BBRG01000001
Actinomycetota
Demequina globuliformis NBRC 106266 [BBRG]
397596
397521
-
Lys
CTT
[ENA]
¡û
>C231342709
CP094289
Actinomycetota
Georgenia sp. TF02-10 [CP094289]
3168848
3168775
-
Lys
CTT
-
¡û
>C241054782
CP040915
Actinomycetota
Georgenia yuyongxinii Z443 [CP040915]
1219490
1219417
-
Lys
CTT
-
¡û
>C241331199
CP136960
Actinomycetota
Actinotignum timonense UMB0063 [CP136960]
1189994
1190067
+
Lys
CTT
-
¡û
>C241356688
CP140666
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP140666]
624661
624734
+
Lys
CTT
-
¡û
>W1610979042
LVZK01000003
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
389871
389796
-
Lys
CTT
[ENA]
¡û
>W1710050259
BBRH01000018
Actinomycetota
Demequina sp. NBRC 110051 [BBRH]
68954
68879
-
Lys
CTT
[ENA]
¡û
>W1710050435
BBRL01000009
Actinomycetota
Demequina sp. NBRC 110055 [BBRL]
185228
185153
-
Lys
CTT
[ENA]
¡û
>W1710050507
BBRN01000003
Actinomycetota
Demequina sp. NBRC 110057 [BBRN]
423771
423696
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK