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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260178 (86 seq.)
>W1711169816
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
850233
850308
+
Thr
CGT
[ENA]
¡û
>W1711312344
MASX01000014
Actinomycetota
Actinobaculum suis [MASX]
19458
19533
+
Thr
CGT
[ENA]
¡û
>W1711312406
MASY01000026
Actinomycetota
Actinobaculum suis [MASY]
12522
12447
-
Thr
CGT
[ENA]
¡û
>W131001215
AGWM01000014
Actinomycetota
Actinotignum schaalii FB123-CNA-2 [AGWM]
21889
21964
+
Thr
CGT
[ENA]
¡û
>W131215373
ATUY01000006
Actinomycetota
Actinotignum urinale DSM 15805 [ATUY]
448
375
-
Thr
CGT
[ENA]
¡û
>WENV180697704
ODDE01003247
[ODDE] human metagenome; G_DNA_Supragingival plaque
2419
2494
+
Thr
CGT
[ENA]
¡û
>WENV180727230
ODGU01003275
[ODGU] human metagenome; G_DNA_Supragingival plaque
3845
3772
-
Thr
CGT
[ENA]
¡û
>WENV180732694
ODGY01002736
[ODGY] human metagenome; G_DNA_Supragingival plaque
2397
2470
+
Thr
CGT
[ENA]
¡û
>WENV180734214
ODGZ01003789
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2397
2470
+
Thr
CGT
[ENA]
¡û
>WENV180735669
ODHB01000227
[ODHB] human metagenome; G_DNA_Supragingival plaque
14810
14883
+
Thr
CGT
[ENA]
¡û
>WENV180739099
ODHD01005106
[ODHD] human metagenome; G_DNA_Supragingival plaque
2376
2449
+
Thr
CGT
[ENA]
¡û
>WENV180750463
ODHS01002526
[ODHS] human metagenome; G_DNA_Supragingival plaque
1401
1328
-
Thr
CGT
[ENA]
¡û
>WENV180777171
ODIL01000237
[ODIL] human metagenome; G_DNA_Supragingival plaque
4183
4110
-
Thr
CGT
[ENA]
¡û
>WENV180778382
ODIM01004860
[ODIM] human metagenome; G_DNA_Supragingival plaque
655
582
-
Thr
CGT
[ENA]
¡û
>WENV180781831
ODIP01005193
[ODIP] human metagenome; G_DNA_Supragingival plaque
1529
1456
-
Thr
CGT
[ENA]
¡û
>WENV180786809
ODIS01000261
[ODIS] human metagenome; G_DNA_Supragingival plaque
12540
12467
-
Thr
CGT
[ENA]
¡û
>WENV180796154
ODJB01001633
[ODJB] human metagenome; G_DNA_Supragingival plaque
2499
2572
+
Thr
CGT
[ENA]
¡û
>WENV180804053
ODJG01000400
[ODJG] human metagenome; G_DNA_Supragingival plaque
16355
16282
-
Thr
CGT
[ENA]
¡û
>WENV180813588
ODJO01001288
[ODJO] human metagenome; G_DNA_Supragingival plaque
15905
15832
-
Thr
CGT
[ENA]
¡û
>WENV180833808
ODKD01000333
[ODKD] human metagenome; G_DNA_Supragingival plaque
14796
14869
+
Thr
CGT
[ENA]
¡û
>WENV180835783
ODKE01012546
[ODKE] human metagenome; G_DNA_Supragingival plaque
973
1046
+
Thr
CGT
[ENA]
¡û
>WENV180843682
ODKN01007974
[ODKN] human metagenome; G_DNA_Supragingival plaque
2034
2107
+
Thr
CGT
[ENA]
¡û
>WENV180846674
ODKT01018449
[ODKT] human metagenome; G_DNA_Supragingival plaque
2377
2450
+
Thr
CGT
[ENA]
¡û
>WENV180868498
ODLL01009945
[ODLL] human metagenome; G_DNA_Buccal mucosa
2
75
+
Thr
CGT
[ENA]
¡û
>WENV180888717
ODMN01002926
[ODMN] human metagenome; G_DNA_Supragingival plaque
2410
2483
+
Thr
CGT
[ENA]
¡û
>WENV180927412
ODTM01000470
[ODTM] human metagenome; G_DNA_Supragingival plaque
17428
17501
+
Thr
CGT
[ENA]
¡û
>WENV180933240
ODTR01000001
[ODTR] human metagenome; G_DNA_Supragingival plaque
388500
388573
+
Thr
CGT
[ENA]
¡û
>WENV180944654
ODUC01027462
[ODUC] human metagenome; G_DNA_Supragingival plaque
98
25
-
Thr
CGT
[ENA]
¡û
>WENV180958324
ODUL01002869
[ODUL] human metagenome; G_DNA_Supragingival plaque
2075
2150
+
Thr
CGT
[ENA]
¡û
>WENV180964412
ODUO01002133
[ODUO] human metagenome; G_DNA_Supragingival plaque
2533
2606
+
Thr
CGT
[ENA]
¡û
>WENV180973456
ODUW01006226
[ODUW] human metagenome; G_DNA_Supragingival plaque
936
863
-
Thr
CGT
[ENA]
¡û
>WENV180973476
ODUW01006580
[ODUW] human metagenome; G_DNA_Supragingival plaque
2396
2469
+
Thr
CGT
[ENA]
¡û
>WENV180986634
ODVK01000220
[ODVK] human metagenome; G_DNA_Supragingival plaque
14266
14339
+
Thr
CGT
[ENA]
¡û
>WENV180998667
ODVT01001172
[ODVT] human metagenome; G_DNA_Buccal mucosa
5405
5478
+
Thr
CGT
[ENA]
¡û
>WENV181002378
ODVX01000258
[ODVX] human metagenome; G_DNA_Supragingival plaque
27163
27090
-
Thr
CGT
[ENA]
¡û
>WENV181007715
ODWE01000520
[ODWE] human metagenome; G_DNA_Supragingival plaque
15362
15289
-
Thr
CGT
[ENA]
¡û
>WENV181019441
ODWU01003158
[ODWU] human metagenome; G_DNA_Supragingival plaque
4215
4142
-
Thr
CGT
[ENA]
¡û
>WENV181050227
ODYD01009337
[ODYD] human metagenome; G_DNA_Supragingival plaque
1508
1435
-
Thr
CGT
[ENA]
¡û
>WENV181063493
ODYP01001094
[ODYP] human metagenome; G_DNA_Supragingival plaque
207
134
-
Thr
CGT
[ENA]
¡û
>WENV181070463
OEAE01001874
[OEAE] human metagenome; G_DNA_Supragingival plaque
2486
2559
+
Thr
CGT
[ENA]
¡û
>WENV181076881
OEAP01016545
[OEAP] human metagenome; G_DNA_Supragingival plaque
218
145
-
Thr
CGT
[ENA]
¡û
>WENV181082712
OEAV01000328
[OEAV] human metagenome; G_DNA_Supragingival plaque
12034
11961
-
Thr
CGT
[ENA]
¡û
>WENV181090371
OEBC01000313
[OEBC] human metagenome; G_DNA_Supragingival plaque
9802
9729
-
Thr
CGT
[ENA]
¡û
>WENV181107480
OEEI01008680
[OEEI] human metagenome; G_DNA_Supragingival plaque
36
109
+
Thr
CGT
[ENA]
¡û
>WENV181143519
OEHM01001715
[OEHM] human metagenome; G_DNA_Supragingival plaque
4756
4683
-
Thr
CGT
[ENA]
¡û
>WENV181145988
OEHQ01000384
[OEHQ] human metagenome; G_DNA_Supragingival plaque
9507
9434
-
Thr
CGT
[ENA]
¡û
>WENV181156001
OEIE01001610
[OEIE] human metagenome; G_DNA_Supragingival plaque
3837
3764
-
Thr
CGT
[ENA]
¡û
>WENV181160506
OEIK01011721
[OEIK] human metagenome; G_DNA_Supragingival plaque
196
123
-
Thr
CGT
[ENA]
¡û
>WENV181177568
OEJS01005568
[OEJS] human metagenome; G_DNA_Supragingival plaque
2829
2756
-
Thr
CGT
[ENA]
¡û
>WENV181179989
OEJT01041626
[OEJT] human metagenome; G_DNA_Supragingival plaque
679
606
-
Thr
CGT
[ENA]
¡û
>WENV181180588
OEJU01000299
[OEJU] human metagenome; G_DNA_Supragingival plaque
16612
16685
+
Thr
CGT
[ENA]
¡û
>WENV181182211
OEJV01003922
[OEJV] human metagenome; G_DNA_Supragingival plaque
2192
2265
+
Thr
CGT
[ENA]
¡û
>W141143125
AWSB01000033
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
14229
14304
+
Thr
CGT
[ENA]
¡û
>WENV182645315
OJLY01008835
[OJLY] metagenome; surface
455
530
+
Thr
CGT
[ENA]
¡û
>WENV183508618
OMHE01005348
[OMHE] human oral metagenome; human oral
487
560
+
Thr
CGT
[ENA]
¡û
>C181172282
CP029033
Actinomycetota
Actinobaculum sp. 313 [CP029033]
327809
327884
+
Thr
CGT
-
¡û
>W09134711
ACUY01000008
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
33151
33226
+
Thr
CGT
[ENA]
¡û
>C191178122
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
1689195
1689268
+
Thr
CGT
-
¡û
>W1910340085
FTLO01000014
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
47992
48067
+
Thr
CGT
[ENA]
¡û
>W1911597390
PNHX01000001
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
382
307
-
Thr
CGT
[ENA]
¡û
>W1911653695
QDIE01000015
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
17909
17982
+
Thr
CGT
[ENA]
¡û
>W1810192528
PKMD01000005
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
43538
43611
+
Thr
CGT
[ENA]
¡û
>W1810192588
PKME01000011
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
43565
43640
+
Thr
CGT
[ENA]
¡û
>W1810580297
QETB01000001
Actinomycetota
Ancrocorticia populi sk1b4 [QETB]
276025
276099
+
Thr
CGT
[ENA]
¡û
>W2010396715
FTLO01000014
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
47992
48067
+
Thr
CGT
[ENA]
¡û
>W2010491855
JAAKDY010000012
Actinomycetota
Schaalia sp. ZJ405 [JAAKDY]
14474
14547
+
Thr
CGT
[ENA]
¡û
>W2010491883
JAAKDZ010000001
Actinomycetota
Schaalia sp. ZJ1691 [JAAKDZ]
1467948
1468021
+
Thr
CGT
[ENA]
¡û
>W2011206287
PNHX01000001
Actinomycetota
Actinotignum urinale UMB0759 [PNHX]
382
307
-
Thr
CGT
[ENA]
¡û
>W2011237254
QDIE01000015
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
17909
17982
+
Thr
CGT
[ENA]
¡û
>W2011479833
RQSN01000005
Actinomycetota
Actinobaculum sp. 352 [RQSN]
114464
114539
+
Thr
CGT
[ENA]
¡û
>W2011954803
UYIO01000001
Actinomycetota
Bacillus pumilus NCTC10327 [UYIO]
409807
409882
+
Thr
CGT
[ENA]
¡û
>W2110185626
JABUJW010000004
Actinomycetota
Actinomycetaceae bacterium zg1095 [JABUJW]
57046
57119
+
Thr
CGT
[ENA]
¡û
>W2110185672
JABUJX010000004
Actinomycetota
Actinomycetaceae bacterium zg1166 [JABUJX]
57045
57118
+
Thr
CGT
[ENA]
¡û
>C201303031
CP059492
Actinomycetota
Arcanobacterium sp. JY-X040 [CP059492]
227450
227523
+
Thr
CGT
-
¡û
>C211196163
CP064952
Actinomycetota
Schaalia sp. ZJ405 [CP064952]
270319
270392
+
Thr
CGT
-
¡û
>C211196247
CP064953
Actinomycetota
Actinomycetaceae bacterium zg-1166 [CP064953]
159807
159734
-
Thr
CGT
-
¡û
>C231638888
CP121247
Actinomycetota
Arcanobacterium wilhelmae DSM 102162 [CP121247]
196413
196487
+
Thr
CGT
-
¡û
>C241274033
CP126967
Actinomycetota
Actinotignum urinale UMB0759 [CP126967]
906029
906104
+
Thr
CGT
-
¡û
>C241331229
CP136960
Actinomycetota
Actinotignum timonense UMB0063 [CP136960]
174735
174662
-
Thr
CGT
-
¡û
>W1511687545
LFUS01000008
Actinomycetota
Actinobaculum suis U311 [LFUS]
17871
17946
+
Thr
CGT
[ENA]
¡û
>W1610095214
CYUL01000001
Actinomycetota
Actinobaculum massiliense [CYUL]
37706
37631
-
Thr
CGT
[ENA]
¡û
>W1610979013
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
850233
850308
+
Thr
CGT
[ENA]
¡û
>W1611057397
MASX01000014
Actinomycetota
Actinobaculum suis [MASX]
19458
19533
+
Thr
CGT
[ENA]
¡û
>W1611057459
MASY01000026
Actinomycetota
Actinobaculum suis [MASY]
12522
12447
-
Thr
CGT
[ENA]
¡û
>W1710098009
CYUL01000001
Actinomycetota
Actinobaculum massiliense [CYUL]
37706
37631
-
Thr
CGT
[ENA]
¡û
>W1710514252
FNAU01000008
Actinomycetota
Actinobaculum suis [FNAU]
110344
110419
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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