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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260218 (98 seq.)
>W1711185381
LWNI01000050
Betaproteobacteria
Neisseria sp. HMSC31F04 [LWNI]
8060
7985
-
Arg
CCG
[ENA]
¡û
>W1711712012
MTBL01000011
Betaproteobacteria
Neisseria canis [MTBL]
65523
65598
+
Arg
CCG
[ENA]
¡û
>WENV180009882
FLSC01143375
[FLSC] metagenome; saliva
102
177
+
Arg
CCG
[ENA]
¡û
>WENV180697723
ODDE01003369
[ODDE] human metagenome; G_DNA_Supragingival plaque
1053
1128
+
Arg
CCG
[ENA]
¡û
>WENV180727680
ODGU01009533
[ODGU] human metagenome; G_DNA_Supragingival plaque
788
863
+
Arg
CCG
[ENA]
¡û
>WENV180734521
ODGZ01011434
[ODGZ] human metagenome; G_DNA_Supragingival plaque
329
404
+
Arg
CCG
[ENA]
¡û
>WENV180734744
ODGZ01021138
[ODGZ] human metagenome; G_DNA_Supragingival plaque
769
844
+
Arg
CCG
[ENA]
¡û
>WENV180735967
ODHB01002479
[ODHB] human metagenome; G_DNA_Supragingival plaque
683
758
+
Arg
CCG
[ENA]
¡û
>WENV180738942
ODHD01001386
[ODHD] human metagenome; G_DNA_Supragingival plaque
7338
7263
-
Arg
CCG
[ENA]
¡û
>WENV180750837
ODHS01009894
[ODHS] human metagenome; G_DNA_Supragingival plaque
1317
1392
+
Arg
CCG
[ENA]
¡û
>WENV180755351
ODHU01132057
[ODHU] human metagenome; G_DNA_Supragingival plaque
125
200
+
Arg
CCG
[ENA]
¡û
>WENV180765088
ODIB01018551
[ODIB] human metagenome; G_DNA_Supragingival plaque
108
33
-
Arg
CCG
[ENA]
¡û
>WENV180776740
ODIK01117438
[ODIK] human metagenome; G_DNA_Tongue dorsum
244
319
+
Arg
CCG
[ENA]
¡û
>WENV180777772
ODIL01092767
[ODIL] human metagenome; G_DNA_Supragingival plaque
110
35
-
Arg
CCG
[ENA]
¡û
>WENV180778557
ODIM01015394
[ODIM] human metagenome; G_DNA_Supragingival plaque
698
773
+
Arg
CCG
[ENA]
¡û
>WENV180787440
ODIS01006118
[ODIS] human metagenome; G_DNA_Supragingival plaque
3120
3195
+
Arg
CCG
[ENA]
¡û
>WENV180797143
ODJB01031959
[ODJB] human metagenome; G_DNA_Supragingival plaque
444
369
-
Arg
CCG
[ENA]
¡û
>WENV180801249
ODJD01016212
[ODJD] human metagenome; G_DNA_Supragingival plaque
733
808
+
Arg
CCG
[ENA]
¡û
>WENV180804456
ODJG01003086
[ODJG] human metagenome; G_DNA_Supragingival plaque
1007
932
-
Arg
CCG
[ENA]
¡û
>WENV180814147
ODJO01008151
[ODJO] human metagenome; G_DNA_Supragingival plaque
3109
3034
-
Arg
CCG
[ENA]
¡û
>WENV180824470
ODJX01008954
[ODJX] human metagenome; G_DNA_Supragingival plaque
1049
974
-
Arg
CCG
[ENA]
¡û
>WENV180832582
ODKC01002504
[ODKC] human metagenome; G_DNA_Supragingival plaque
7429
7504
+
Arg
CCG
[ENA]
¡û
>WENV180834550
ODKD01049606
[ODKD] human metagenome; G_DNA_Supragingival plaque
357
432
+
Arg
CCG
[ENA]
¡û
>WENV180844584
ODKN01217291
[ODKN] human metagenome; G_DNA_Supragingival plaque
83
8
-
Arg
CCG
[ENA]
¡û
>WENV180846114
ODKT01005430
[ODKT] human metagenome; G_DNA_Supragingival plaque
2477
2552
+
Arg
CCG
[ENA]
¡û
>WENV180853353
ODKW01076088
[ODKW] human metagenome; G_DNA_Tongue dorsum
314
389
+
Arg
CCG
[ENA]
¡û
>WENV180859522
ODLD01001095
[ODLD] human metagenome; G_DNA_Supragingival plaque
11825
11900
+
Arg
CCG
[ENA]
¡û
>WENV180866500
ODLJ01027981
[ODLJ] human metagenome; G_DNA_Tongue dorsum
798
873
+
Arg
CCG
[ENA]
¡û
>WENV180873994
ODLP01076790
[ODLP] human metagenome; G_DNA_Tongue dorsum
212
287
+
Arg
CCG
[ENA]
¡û
>WENV180880635
ODLZ01038869
[ODLZ] human metagenome; G_DNA_Tongue dorsum
797
872
+
Arg
CCG
[ENA]
¡û
>WENV180888690
ODMN01002544
[ODMN] human metagenome; G_DNA_Supragingival plaque
6358
6433
+
Arg
CCG
[ENA]
¡û
>WENV180922302
ODTJ01002483
[ODTJ] human metagenome; G_DNA_Supragingival plaque
7357
7282
-
Arg
CCG
[ENA]
¡û
>WENV180925133
ODTK01043479
[ODTK] human metagenome; G_DNA_Supragingival plaque
339
414
+
Arg
CCG
[ENA]
¡û
>WENV180927807
ODTM01004164
[ODTM] human metagenome; G_DNA_Supragingival plaque
3109
3034
-
Arg
CCG
[ENA]
¡û
>WENV180933412
ODTR01000109
[ODTR] human metagenome; G_DNA_Supragingival plaque
37032
36957
-
Arg
CCG
[ENA]
¡û
>WENV180934798
ODTS01003096
[ODTS] human metagenome; G_DNA_Subgingival plaque
3054
2979
-
Arg
CCG
[ENA]
¡û
>WENV180939087
ODTX01014656
[ODTX] human metagenome; G_DNA_Supragingival plaque
1532
1457
-
Arg
CCG
[ENA]
¡û
>WENV180944007
ODUC01006030
[ODUC] human metagenome; G_DNA_Supragingival plaque
1355
1430
+
Arg
CCG
[ENA]
¡û
>WENV180958081
ODUL01000349
[ODUL] human metagenome; G_DNA_Supragingival plaque
11435
11510
+
Arg
CCG
[ENA]
¡û
>WENV180972725
ODUW01000079
[ODUW] human metagenome; G_DNA_Supragingival plaque
39838
39763
-
Arg
CCG
[ENA]
¡û
>WENV180976533
ODUY01134848
[ODUY] human metagenome; G_DNA_Supragingival plaque
141
66
-
Arg
CCG
[ENA]
¡û
>WENV180981061
ODVE01005980
[ODVE] human metagenome; G_DNA_Supragingival plaque
784
859
+
Arg
CCG
[ENA]
¡û
>WENV180983592
ODVF01021244
[ODVF] human metagenome; G_DNA_Supragingival plaque
1053
1128
+
Arg
CCG
[ENA]
¡û
>WENV180986767
ODVK01000742
[ODVK] human metagenome; G_DNA_Supragingival plaque
12927
13002
+
Arg
CCG
[ENA]
¡û
>WENV180999241
ODVT01009730
[ODVT] human metagenome; G_DNA_Buccal mucosa
611
536
-
Arg
CCG
[ENA]
¡û
>WENV181003280
ODVX01008221
[ODVX] human metagenome; G_DNA_Supragingival plaque
776
851
+
Arg
CCG
[ENA]
¡û
>WENV181008545
ODWE01007301
[ODWE] human metagenome; G_DNA_Supragingival plaque
1169
1244
+
Arg
CCG
[ENA]
¡û
>WENV181019265
ODWU01001456
[ODWU] human metagenome; G_DNA_Supragingival plaque
6830
6905
+
Arg
CCG
[ENA]
¡û
>WENV181029741
ODXF01002864
[ODXF] human metagenome; G_DNA_Supragingival plaque
1308
1383
+
Arg
CCG
[ENA]
¡û
>WENV181049776
ODYD01002111
[ODYD] human metagenome; G_DNA_Supragingival plaque
6649
6724
+
Arg
CCG
[ENA]
¡û
>WENV181050704
ODYD01045618
[ODYD] human metagenome; G_DNA_Supragingival plaque
113
38
-
Arg
CCG
[ENA]
¡û
>WENV181064316
ODYP01020086
[ODYP] human metagenome; G_DNA_Supragingival plaque
432
507
+
Arg
CCG
[ENA]
¡û
>WENV181067695
ODZI01040114
[ODZI] human metagenome; G_DNA_Supragingival plaque
563
488
-
Arg
CCG
[ENA]
¡û
>WENV181070065
OEAE01000201
[OEAE] human metagenome; G_DNA_Supragingival plaque
14807
14882
+
Arg
CCG
[ENA]
¡û
>WENV181076302
OEAP01003506
[OEAP] human metagenome; G_DNA_Supragingival plaque
6366
6441
+
Arg
CCG
[ENA]
¡û
>WENV181079805
OEAS01015412
[OEAS] human metagenome; G_DNA_Supragingival plaque
1055
980
-
Arg
CCG
[ENA]
¡û
>WENV181083486
OEAV01008378
[OEAV] human metagenome; G_DNA_Supragingival plaque
1081
1006
-
Arg
CCG
[ENA]
¡û
>WENV181091360
OEBC01027728
[OEBC] human metagenome; G_DNA_Supragingival plaque
139
64
-
Arg
CCG
[ENA]
¡û
>WENV181101201
OECM01014664
[OECM] human metagenome; G_DNA_Buccal mucosa
224
299
+
Arg
CCG
[ENA]
¡û
>WENV181106363
OEED01126239
[OEED] human metagenome; G_DNA_Tongue dorsum
113
188
+
Arg
CCG
[ENA]
¡û
>WENV181107545
OEEI01010830
[OEEI] human metagenome; G_DNA_Supragingival plaque
1165
1240
+
Arg
CCG
[ENA]
¡û
>WENV181123680
OEFQ01000329
[OEFQ] human metagenome; G_DNA_Supragingival plaque
6659
6584
-
Arg
CCG
[ENA]
¡û
>WENV181138120
OEGJ01115074
[OEGJ] human metagenome; G_DNA_Supragingival plaque
92
17
-
Arg
CCG
[ENA]
¡û
>WENV181143241
OEHM01000276
[OEHM] human metagenome; G_DNA_Supragingival plaque
19312
19387
+
Arg
CCG
[ENA]
¡û
>WENV181146352
OEHQ01003605
[OEHQ] human metagenome; G_DNA_Supragingival plaque
4105
4030
-
Arg
CCG
[ENA]
¡û
>WENV181152230
OEIA01000455
[OEIA] human metagenome; G_DNA_Supragingival plaque
9827
9752
-
Arg
CCG
[ENA]
¡û
>WENV181156545
OEIE01028351
[OEIE] human metagenome; G_DNA_Supragingival plaque
805
880
+
Arg
CCG
[ENA]
¡û
>WENV181159025
OEIH01032005
[OEIH] human metagenome; G_DNA_Supragingival plaque
406
481
+
Arg
CCG
[ENA]
¡û
>WENV181161037
OEIK01101308
[OEIK] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
CCG
[ENA]
¡û
>WENV181178278
OEJS01134714
[OEJS] human metagenome; G_DNA_Supragingival plaque
99
24
-
Arg
CCG
[ENA]
¡û
>WENV181179423
OEJT01004695
[OEJT] human metagenome; G_DNA_Supragingival plaque
3525
3450
-
Arg
CCG
[ENA]
¡û
>WENV181180685
OEJU01000597
[OEJU] human metagenome; G_DNA_Supragingival plaque
13119
13194
+
Arg
CCG
[ENA]
¡û
>WENV181182164
OEJV01003222
[OEJV] human metagenome; G_DNA_Supragingival plaque
3108
3033
-
Arg
CCG
[ENA]
¡û
>WENV183508278
OMHC01001224
[OMHC] human oral metagenome; human oral
567
492
-
Arg
CCG
[ENA]
¡û
>WENV183509592
OMHI01016899
[OMHI] human oral metagenome; human oral
428
503
+
Arg
CCG
[ENA]
¡û
>C181198237
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
2167737
2167662
-
Arg
CCG
-
¡û
>C181198419
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
2212484
2212559
+
Arg
CCG
-
¡û
>C181213208
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
1104000
1103925
-
Arg
CCG
-
¡û
>W1810227349
POXH01000001
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
104458
104383
-
Arg
CCG
[ENA]
¡û
>W1810227450
POXJ01000001
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
60637
60562
-
Arg
CCG
[ENA]
¡û
>W1810227942
POXS01000014
Betaproteobacteria
Neisseria elongata C2013010062 [POXS]
13116
13191
+
Arg
CCG
[ENA]
¡û
>W1810228091
POXV01000005
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
31758
31683
-
Arg
CCG
[ENA]
¡û
>W1810228243
POXY01000003
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
253971
254046
+
Arg
CCG
[ENA]
¡û
>C151033139
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
677392
677317
-
Arg
CCG
[Ensembl]
¡û
>W2011814613
UFSO01000003
Betaproteobacteria
Alysiella crassa NCTC10283 [UFSO]
832808
832733
-
Arg
CCG
[ENA]
¡û
>W2011826488
UGJJ01000002
Betaproteobacteria
Kingella potus NCTC13336 [UGJJ]
150068
150143
+
Arg
CCG
[ENA]
¡û
>W2011832375
UGQW01000002
Betaproteobacteria
Neisseria elongata NCTC10660 [UGQW]
994395
994470
+
Arg
CCG
[ENA]
¡û
>W2110492059
JAFEUH010000002
Betaproteobacteria
Neisseria elongata AR-0945 [JAFEUH]
145735
145810
+
Arg
CCG
[ENA]
¡û
>W2110558238
JAGJWT010000014
Betaproteobacteria
Neisseria elongata subsp. nitroreducens Nel_M001 [JAGJWT]
44568
44493
-
Arg
CCG
[ENA]
¡û
>W10109806
ADBF01000042
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
35908
35833
-
Arg
CCG
[ENA]
¡û
>C231300213
CP091516
Betaproteobacteria
Kingella potus 3/SID/1128 [CP091516]
1861358
1861283
-
Arg
CCG
-
¡û
>C231300319
CP091519
Betaproteobacteria
Alysiella crassa S6 [CP091519]
1963546
1963471
-
Arg
CCG
-
¡û
>W11112193
ADBF01000042
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
35908
35833
-
Arg
CCG
[ENA]
¡û
>W1511456060
JVHH01000010
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
125925
125850
-
Arg
CCG
[ENA]
¡û
>W1511457674
JVIM01000017
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
125925
125850
-
Arg
CCG
[ENA]
¡û
>W1511469676
JVVT01000018
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
4273
4198
-
Arg
CCG
[ENA]
¡û
>W11177511
AGAZ01000036
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
23853
23928
+
Arg
CCG
[ENA]
¡û
>W1710563510
FOPS01000010
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
30809
30884
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK