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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260283 (40 seq.)
>W1710893436
LNET01000074
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
7340
7265
-
Thr
CGT
[ENA]
¡û
>W131178119
ARLH01000092
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
81023
80948
-
Thr
CGT
[ENA]
¡û
>W1711744319
MUHU01000001
Betaproteobacteria
Derxia lacustris [MUHU]
328989
328914
-
Thr
CGT
[ENA]
¡û
>W1711793347
MWLO01000100
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
5955
5880
-
Thr
CGT
[ENA]
¡û
>WENV180284361
OBID01034594
[OBID] metagenome; sludge
352
427
+
Thr
CGT
[ENA]
¡û
>W141169869
AXWS01000007
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
352482
352407
-
Thr
CGT
[ENA]
¡û
>WENV183661797
ORJL010137395
[ORJL] groundwater metagenome; groundwater
829
754
-
Thr
CGT
[ENA]
¡û
>WENV170559219
CXWL01114895
[CXWL] groundwater metagenome; biofilm material
867
942
+
Thr
CGT
[ENA]
¡û
>WENV170573447
FLYK01027702
[FLYK] hot springs metagenome; Sediment
216
291
+
Thr
CGT
[ENA]
¡û
>WENV170575079
FLYN01029958
[FLYN] hot springs metagenome; Sediment
1609
1534
-
Thr
CGT
[ENA]
¡û
>WENV170709216
LNFM01000195
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
49368
49293
-
Thr
CGT
[ENA]
¡û
>WENV170710363
LNFM01001609
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
59659
59734
+
Thr
CGT
[ENA]
¡û
>WENV170710984
LNFM01003204
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10208
10283
+
Thr
CGT
[ENA]
¡û
>WENV170711621
LNFM01006128
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
31600
31675
+
Thr
CGT
[ENA]
¡û
>WENV170712317
LNFM01012094
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11371
11446
+
Thr
CGT
[ENA]
¡û
>WENV170713117
LNFM01024180
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5989
5914
-
Thr
CGT
[ENA]
¡û
>WENV170714985
LNFM01121789
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
84
9
-
Thr
CGT
[ENA]
¡û
>W1910126448
BGOW01000046
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
27224
27299
+
Thr
CGT
[ENA]
¡û
>W1910175587
BJCL01000002
Betaproteobacteria
Aquabacterium pictum W35 [BJCL]
428137
428212
+
Thr
CGT
[ENA]
¡û
>C141000186
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
2163151
2163076
-
Thr
CGT
[Ensembl]
¡û
>W1910700051
MESD01000124
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 [MESD]
83707
83782
+
Thr
CGT
[ENA]
¡û
>W1810273255
PSNX01000002
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
258452
258527
+
Thr
CGT
[ENA]
¡û
>W1810273315
PSNY01000009
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
9448
9373
-
Thr
CGT
[ENA]
¡û
>W1810762734
QQAP01000001
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
9457
9382
-
Thr
CGT
[ENA]
¡û
>W2010080532
BGOW01000046
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
27224
27299
+
Thr
CGT
[ENA]
¡û
>W2010088964
BJCL01000002
Betaproteobacteria
Aquabacterium pictum W35 [BJCL]
428137
428212
+
Thr
CGT
[ENA]
¡û
>W2010106084
BKAD01000004
Betaproteobacteria
Sulfuriferula plumbiphila NBRC 107929 [BKAD]
141653
141728
+
Thr
CGT
[ENA]
¡û
>W2010833477
MESD01000124
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_69_20 [MESD]
83707
83782
+
Thr
CGT
[ENA]
¡û
>W2011622856
SLXF01000006
Betaproteobacteria
Schlegelella thermodepolymerans DSM 15264 [SLXF]
278255
278330
+
Thr
CGT
[ENA]
¡û
>W2011701392
SWAR01000015
Betaproteobacteria
Rivibacter sp. C1-9 [SWAR]
72037
71962
-
Thr
CGT
[ENA]
¡û
>C211190785
CP064338
Betaproteobacteria
Schlegelella thermodepolymerans DSM 15344 [CP064338]
1108543
1108468
-
Thr
CGT
-
¡û
>W1510019339
BBWF01000078
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
54054
53979
-
Thr
CGT
[ENA]
¡û
>C231529488
CP110257
Betaproteobacteria
Schlegelella aquatica LMG 23380 [CP110257]
924687
924612
-
Thr
CGT
-
¡û
>C231533209
CP110415
Betaproteobacteria
Caldimonas thermodepolymerans LMG 21645 [CP110415]
1115964
1115889
-
Thr
CGT
-
¡û
>C231533259
CP110416
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15264 [CP110416]
1211260
1211185
-
Thr
CGT
-
¡û
>C241004745
AP021884
Betaproteobacteria
Sulfuriferula plumbiphila Gro7 [AP021884]
1117840
1117765
-
Thr
CGT
-
¡û
>W121124622
BAFJ01000002
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
34826
34751
-
Thr
CGT
[ENA]
¡û
>W1610074112
BCWK01000003
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
176036
176111
+
Thr
CGT
[ENA]
¡û
>W1610753702
LNET01000074
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
7340
7265
-
Thr
CGT
[ENA]
¡û
>W1710071230
BCWK01000003
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
176036
176111
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK