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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260287 (109 seq.)
>W1710785309
LJHT01000020
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
17746
17671
-
Glu
TTC
[ENA]
¡û
>W1710785445
LJHW01000008
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
136412
136487
+
Glu
TTC
[ENA]
¡û
>W1710785747
LJID01000014
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
5256
5331
+
Glu
TTC
[ENA]
¡û
>W1710893433
LNET01000067
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
9556
9631
+
Glu
TTC
[ENA]
¡û
>W1711386286
MEFD01000021
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
111328
111403
+
Glu
TTC
[ENA]
¡û
>W1712103005
NIOG01000001
Betaproteobacteria
Roseateles terrae [NIOG]
1107015
1106940
-
Glu
TTC
[ENA]
¡û
>W1712103008
NIOG01000001
Betaproteobacteria
Roseateles terrae [NIOG]
1106467
1106392
-
Glu
TTC
[ENA]
¡û
>W131178117
ARLH01000092
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
167904
167979
+
Glu
TTC
[ENA]
¡û
>W131214619
ATUI01000011
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
162825
162750
-
Glu
TTC
[ENA]
¡û
>W131214632
ATUI01000030
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
338
263
-
Glu
TTC
[ENA]
¡û
>W131214633
ATUI01000030
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
163
88
-
Glu
TTC
[ENA]
¡û
>W131236675
AUMO01000016
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
218722
218797
+
Glu
TTC
[ENA]
¡û
>W131236677
AUMO01000016
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
219002
219077
+
Glu
TTC
[ENA]
¡û
>WENV180096123
MTBK01111324
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1732
1807
+
Glu
TTC
[ENA]
¡û
>WENV170018694
BBPD01000405
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
50868
50793
-
Glu
TTC
[ENA]
¡û
>WENV170019939
BBPE01001647
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5318
5393
+
Glu
TTC
[ENA]
¡û
>WENV170651333
JRYF01007144
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
199
124
-
Glu
TTC
[ENA]
¡û
>WENV170652048
JRYG01058374
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
2
77
+
Glu
TTC
[ENA]
¡û
>WENV170710461
LNFM01001809
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
31600
31525
-
Glu
TTC
[ENA]
¡û
>WENV170711745
LNFM01007006
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
30834
30909
+
Glu
TTC
[ENA]
¡û
>WENV170712107
LNFM01009786
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19622
19547
-
Glu
TTC
[ENA]
¡û
>WENV170713913
LNFM01046494
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3010
3085
+
Glu
TTC
[ENA]
¡û
>WENV170713922
LNFM01046769
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2991
3066
+
Glu
TTC
[ENA]
¡û
>WENV170714846
LNFM01106663
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1324
1249
-
Glu
TTC
[ENA]
¡û
>C191182054
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2028502
2028577
+
Glu
TTC
-
¡û
>C191182057
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2028970
2029045
+
Glu
TTC
-
¡û
>W1911701441
QNUI01000063
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
16649
16574
-
Glu
TTC
[ENA]
¡û
>W1911702164
QOAZ01000001
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
248641
248566
-
Glu
TTC
[ENA]
¡û
>W1810273328
PSNY01000018
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
13102
13177
+
Glu
TTC
[ENA]
¡û
>W1810666674
QJOU01000112
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
9759
9684
-
Glu
TTC
[ENA]
¡û
>W1810762740
QQAP01000002
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
414277
414352
+
Glu
TTC
[ENA]
¡û
>W1810884629
QUMT01000002
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
714019
714094
+
Glu
TTC
[ENA]
¡û
>W1810884632
QUMT01000002
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
714572
714647
+
Glu
TTC
[ENA]
¡û
>C151081655
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
1817460
1817535
+
Glu
TTC
[Ensembl]
¡û
>C151081657
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
1817731
1817806
+
Glu
TTC
[Ensembl]
¡û
>W2010495158
JAALCQ010000003
Betaproteobacteria
Rubrivivax sp. JA1026 [JAALCQ]
335796
335721
-
Glu
TTC
[ENA]
¡û
>W2010495159
JAALCQ010000003
Betaproteobacteria
Rubrivivax sp. JA1026 [JAALCQ]
335621
335546
-
Glu
TTC
[ENA]
¡û
>W2010528602
JAAOCD010000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2-Mal [JAAOCD]
635745
635820
+
Glu
TTC
[ENA]
¡û
>W2010528603
JAAOCD010000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2-Mal [JAAOCD]
635920
635995
+
Glu
TTC
[ENA]
¡û
>W2010528648
JAAOCE010000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2-Glc [JAAOCE]
325419
325344
-
Glu
TTC
[ENA]
¡û
>W2010528649
JAAOCE010000001
Betaproteobacteria
Rubrivivax benzoatilyticus JA2-Glc [JAAOCE]
325244
325169
-
Glu
TTC
[ENA]
¡û
>W2010587402
JABBFW010000006
Betaproteobacteria
Azohydromonas sp. G-1-1-14 [JABBFW]
165207
165132
-
Glu
TTC
[ENA]
¡û
>W2010587404
JABBFW010000006
Betaproteobacteria
Azohydromonas sp. G-1-1-14 [JABBFW]
164947
164872
-
Glu
TTC
[ENA]
¡û
>W2010587407
JABBFW010000006
Betaproteobacteria
Azohydromonas sp. G-1-1-14 [JABBFW]
164587
164512
-
Glu
TTC
[ENA]
¡û
>W2010612404
JABRWJ010000009
Betaproteobacteria
Aquincola sp. S2 [JABRWJ]
223425
223350
-
Glu
TTC
[ENA]
¡û
>W2010702738
JACHHO010000004
Betaproteobacteria
Inhella inkyongensis DSM 23958 [JACHHO]
289683
289608
-
Glu
TTC
[ENA]
¡û
>W2010702741
JACHHO010000004
Betaproteobacteria
Inhella inkyongensis DSM 23958 [JACHHO]
289215
289140
-
Glu
TTC
[ENA]
¡û
>W2010716735
JACHXO010000001
Betaproteobacteria
Roseateles terrae CECT 7247 [JACHXO]
374445
374520
+
Glu
TTC
[ENA]
¡û
>W2010716738
JACHXO010000001
Betaproteobacteria
Roseateles terrae CECT 7247 [JACHXO]
374993
375068
+
Glu
TTC
[ENA]
¡û
>W2010733561
JACIVI010000001
Betaproteobacteria
Piscinibacter sp. SJAQ100 [JACIVI]
474603
474678
+
Glu
TTC
[ENA]
¡û
>W2010743007
JACJUG010000010
Betaproteobacteria
Mitsuaria sp. WAJ17 [JACJUG]
140751
140676
-
Glu
TTC
[ENA]
¡û
>W2010743010
JACJUG010000010
Betaproteobacteria
Mitsuaria sp. WAJ17 [JACJUG]
140317
140242
-
Glu
TTC
[ENA]
¡û
>W2011277981
QNUI01000063
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
16649
16574
-
Glu
TTC
[ENA]
¡û
>W2011278779
QOAZ01000001
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
248641
248566
-
Glu
TTC
[ENA]
¡û
>W2011397773
RCHJ01000022
Betaproteobacteria
Piscinibacter defluvii SH-1 [RCHJ]
88208
88283
+
Glu
TTC
[ENA]
¡û
>W2011522088
SACM01000001
Betaproteobacteria
Inhella sp. CCP-18 [SACM]
712106
712031
-
Glu
TTC
[ENA]
¡û
>W2011522365
SACR01000005
Betaproteobacteria
Ideonella sp. KYPY4 [SACR]
557630
557705
+
Glu
TTC
[ENA]
¡û
>W2011622748
SLXD01000007
Betaproteobacteria
Rubrivivax gelatinosus DSM 1709 [SLXD]
33179
33254
+
Glu
TTC
[ENA]
¡û
>W2011622749
SLXD01000007
Betaproteobacteria
Rubrivivax gelatinosus DSM 1709 [SLXD]
33349
33424
+
Glu
TTC
[ENA]
¡û
>W2011622839
SLXF01000002
Betaproteobacteria
Schlegelella thermodepolymerans DSM 15264 [SLXF]
49798
49723
-
Glu
TTC
[ENA]
¡û
>W2012037206
VIDQ01000013
Betaproteobacteria
Azohydromonas sp. 13393 [VIDQ]
5584
5659
+
Glu
TTC
[ENA]
¡û
>W2012037208
VIDQ01000013
Betaproteobacteria
Azohydromonas sp. 13393 [VIDQ]
5868
5943
+
Glu
TTC
[ENA]
¡û
>W2012037211
VIDQ01000013
Betaproteobacteria
Azohydromonas sp. 13393 [VIDQ]
6238
6313
+
Glu
TTC
[ENA]
¡û
>W2012106188
VOPW01000001
Betaproteobacteria
Piscinibacter aquaticus KACC 15278 [VOPW]
2556236
2556161
-
Glu
TTC
[ENA]
¡û
>W2110362766
JADOUB010000001
Betaproteobacteria
Rubrivivax gelatinosus CBS [JADOUB]
3144843
3144918
+
Glu
TTC
[ENA]
¡û
>W2110362767
JADOUB010000001
Betaproteobacteria
Rubrivivax gelatinosus CBS [JADOUB]
3145013
3145088
+
Glu
TTC
[ENA]
¡û
>W2110406165
JAEDAL010000003
Betaproteobacteria
Inhella gelatinilytica 4Y10 [JAEDAL]
310380
310305
-
Glu
TTC
[ENA]
¡û
>W2110406168
JAEDAL010000003
Betaproteobacteria
Inhella gelatinilytica 4Y10 [JAEDAL]
309904
309829
-
Glu
TTC
[ENA]
¡û
>W2110445532
JAERRA010000001
Betaproteobacteria
Piscinibacter sp. Jin2 [JAERRA]
1540599
1540674
+
Glu
TTC
[ENA]
¡û
>W2110566442
JAGQDD010000009
Betaproteobacteria
Ideonella sp. 3Y2 [JAGQDD]
115595
115670
+
Glu
TTC
[ENA]
¡û
>W2110566445
JAGQDD010000009
Betaproteobacteria
Ideonella sp. 3Y2 [JAGQDD]
116038
116113
+
Glu
TTC
[ENA]
¡û
>W2110566517
JAGQDE010000029
Betaproteobacteria
Ideonella sp. 4Y11 [JAGQDE]
12953
13028
+
Glu
TTC
[ENA]
¡û
>W2110566520
JAGQDE010000029
Betaproteobacteria
Ideonella sp. 4Y11 [JAGQDE]
13392
13467
+
Glu
TTC
[ENA]
¡û
>W2110566555
JAGQDF010000005
Betaproteobacteria
Ideonella sp. 4Y16 [JAGQDF]
303528
303603
+
Glu
TTC
[ENA]
¡û
>W2110566558
JAGQDF010000005
Betaproteobacteria
Ideonella sp. 4Y16 [JAGQDF]
303967
304042
+
Glu
TTC
[ENA]
¡û
>W2110566602
JAGQDG010000004
Betaproteobacteria
Ideonella paludis KCTC 32238 [JAGQDG]
83835
83760
-
Glu
TTC
[ENA]
¡û
>W2110566604
JAGQDG010000004
Betaproteobacteria
Ideonella paludis KCTC 32238 [JAGQDG]
83503
83428
-
Glu
TTC
[ENA]
¡û
>C211190768
CP064338
Betaproteobacteria
Schlegelella thermodepolymerans DSM 15344 [CP064338]
2504493
2504418
-
Glu
TTC
-
¡û
>W2110753306
NRRI01000041
Betaproteobacteria
Rubrivivax gelatinosus DSM 1709 [NRRI]
32923
32998
+
Glu
TTC
[ENA]
¡û
>W2110753307
NRRI01000041
Betaproteobacteria
Rubrivivax gelatinosus DSM 1709 [NRRI]
33093
33168
+
Glu
TTC
[ENA]
¡û
>W2110753727
NRRT01000098
Betaproteobacteria
Rubrivivax gelatinosus DSM 149 [NRRT]
13254
13329
+
Glu
TTC
[ENA]
¡û
>W2110753728
NRRT01000098
Betaproteobacteria
Rubrivivax gelatinosus DSM 149 [NRRT]
13427
13502
+
Glu
TTC
[ENA]
¡û
>W2110754556
NSLA01000074
Betaproteobacteria
Rubrivivax gelatinosus IM 456 [NSLA]
13498
13573
+
Glu
TTC
[ENA]
¡û
>W2110754557
NSLA01000074
Betaproteobacteria
Rubrivivax gelatinosus IM 456 [NSLA]
13670
13745
+
Glu
TTC
[ENA]
¡û
>C231529454
CP110257
Betaproteobacteria
Schlegelella aquatica LMG 23380 [CP110257]
1229382
1229457
+
Glu
TTC
-
¡û
>C231533192
CP110415
Betaproteobacteria
Caldimonas thermodepolymerans LMG 21645 [CP110415]
2639133
2639058
-
Glu
TTC
-
¡û
>C231533242
CP110416
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15264 [CP110416]
2730204
2730129
-
Glu
TTC
-
¡û
>W2130025162
JAEDAK010000003
Betaproteobacteria
Inhella proteolytica 1Y17 [JAEDAK]
196353
196278
-
Glu
TTC
[ENA]
¡û
>W2130025165
JAEDAK010000003
Betaproteobacteria
Inhella proteolytica 1Y17 [JAEDAK]
195884
195809
-
Glu
TTC
[ENA]
¡û
>W2130043419
NRRU01000120
Betaproteobacteria
Rubrivivax gelatinosus IM 151 [NRRU]
935
860
-
Glu
TTC
[ENA]
¡û
>W2130043420
NRRU01000120
Betaproteobacteria
Rubrivivax gelatinosus IM 151 [NRRU]
762
687
-
Glu
TTC
[ENA]
¡û
>W11150905
AEWG01000008
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
24887
24812
-
Glu
TTC
[ENA]
¡û
>W11150906
AEWG01000008
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
24712
24637
-
Glu
TTC
[ENA]
¡û
>C121001092
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
1316436
1316511
+
Glu
TTC
[Ensembl]
¡û
>C121001093
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
1316606
1316681
+
Glu
TTC
[Ensembl]
¡û
>C161060285
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
2696264
2696339
+
Glu
TTC
[Ensembl]
¡û
>C161060288
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
2696817
2696892
+
Glu
TTC
[Ensembl]
¡û
>W1610070244
BCTC01000029
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
267
192
-
Glu
TTC
[ENA]
¡û
>W1610074117
BCWK01000003
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
89271
89196
-
Glu
TTC
[ENA]
¡û
>W121060115
AJFF01000337
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
5181
5256
+
Glu
TTC
[ENA]
¡û
>W121060116
AJFF01000337
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
5351
5426
+
Glu
TTC
[ENA]
¡û
>W1610649115
LJHT01000020
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
17746
17671
-
Glu
TTC
[ENA]
¡û
>W1610649251
LJHW01000008
Betaproteobacteria
beta proteobacterium AAP65 [LJHW]
136412
136487
+
Glu
TTC
[ENA]
¡û
>W1610649553
LJID01000014
Betaproteobacteria
beta proteobacterium AAP121 [LJID]
5256
5331
+
Glu
TTC
[ENA]
¡û
>W1610753699
LNET01000067
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
9556
9631
+
Glu
TTC
[ENA]
¡û
>W1710067617
BCTC01000029
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
267
192
-
Glu
TTC
[ENA]
¡û
>W1710071235
BCWK01000003
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
89271
89196
-
Glu
TTC
[ENA]
¡û
>W1710544470
FOAV01000005
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
167872
167797
-
Glu
TTC
[ENA]
¡û
>W1710544473
FOAV01000005
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
167352
167277
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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