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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260427 (133 seq.)
>W1710786939
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4456092
4456165
+
Trp
CCA
[ENA]
¡û
>W1710860281
LMCT01000012
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
266664
266591
-
Trp
CCA
[ENA]
¡û
>W1710866964
LMHX01000004
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
300170
300097
-
Trp
CCA
[ENA]
¡û
>W1710996461
LQBL01000011
Actinomycetota
Serinicoccus chungangensis [LQBL]
171342
171415
+
Trp
CCA
[ENA]
¡û
>W1711137997
LVCF01000001
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
471216
471141
-
Trp
CCA
[ENA]
¡û
>W1711183411
LWLA01000012
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
292904
292831
-
Trp
CCA
[ENA]
¡û
>W1711491933
MKJZ01000006
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
15757
15830
+
Trp
CCA
[ENA]
¡û
>W1711491979
MKKA01000004
Actinomycetota
Ornithinimicrobium sp. CNJ-824 [MKKA]
40940
40867
-
Trp
CCA
[ENA]
¡û
>W1711492220
MKKF01000013
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
5120
5193
+
Trp
CCA
[ENA]
¡û
>W1711511144
MLCF01000004
Actinomycetota
Mangrovactinospora gilvigrisea gilvigriseus [MLCF]
10466
10541
+
Trp
CCA
[ENA]
¡û
>W1711627040
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
4204782
4204855
+
Trp
CCA
[ENA]
¡û
>C171034667
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
3150747
3150820
+
Trp
CCA
-
¡û
>C171109498
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
3221391
3221464
+
Trp
CCA
-
¡û
>W131217015
ATWJ01000001
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
38644
38571
-
Trp
CCA
[ENA]
¡û
>W131217168
ATWM01000006
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
182479
182552
+
Trp
CCA
[ENA]
¡û
>WENV014952
AACY020417892
Marine microbial communities from Global Ocean Sampling (GOS)
1022
1097
+
Trp
CCA
[ENA]
>WENV180019300
FTBU01000514
[FTBU] metagenome; soil
1135
1062
-
Trp
CCA
[ENA]
¡û
>WENV180023354
FTHV01001125
[FTHV] metagenome; soil
3512
3585
+
Trp
CCA
[ENA]
¡û
>WENV180023515
FTHY01006354
[FTHY] metagenome; soil
1047
974
-
Trp
CCA
[ENA]
¡û
>WENV180024707
FTIJ01000366
[FTIJ] metagenome; soil
1315
1388
+
Trp
CCA
[ENA]
¡û
>WENV180033163
FTKF01003198
[FTKF] metagenome; soil
695
768
+
Trp
CCA
[ENA]
¡û
>WENV180033635
FTKL01000778
[FTKL] metagenome; soil
1136
1209
+
Trp
CCA
[ENA]
¡û
>WENV180284013
OBID01010754
[OBID] metagenome; sludge
1546
1619
+
Trp
CCA
[ENA]
¡û
>WENV181040403
ODXR01011664
[ODXR] human metagenome; G_DNA_Anterior nares
316
243
-
Trp
CCA
[ENA]
¡û
>W141282723
JAIY01000008
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
161661
161588
-
Trp
CCA
[ENA]
¡û
>WENV183704298
PDWI01000138
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1431
1358
-
Trp
CCA
[ENA]
¡û
>WENV170010694
APMI01025501
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
229
156
-
Trp
CCA
[ENA]
¡û
>WENV170011711
APMI01084226
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1720
1647
-
Trp
CCA
[ENA]
¡û
>WENV170011811
APMI01093515
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
447
520
+
Trp
CCA
[ENA]
¡û
>WENV170565586
FJVZ01000650
[FJVZ] metagenome; soil
14974
15047
+
Trp
CCA
[ENA]
¡û
>WENV170973571
MTKY01047829
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3777
3852
+
Trp
CCA
[ENA]
¡û
>WENV170973944
MTKY01051968
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
584
511
-
Trp
CCA
[ENA]
¡û
>WENV170977876
MTKZ01034267
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
10804
10731
-
Trp
CCA
[ENA]
¡û
>WENV170979643
MTKZ01100535
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
85
10
-
Trp
CCA
[ENA]
¡û
>WENV170979841
MTKZ01110547
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
829
902
+
Trp
CCA
[ENA]
¡û
>C181116327
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
3532812
3532739
-
Trp
CCA
-
¡û
>C191150922
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
3175910
3175837
-
Trp
CCA
-
¡û
>C191158389
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
2833561
2833488
-
Trp
CCA
-
¡û
>C191183683
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
2499344
2499271
-
Trp
CCA
-
¡û
>W141755550
JNWQ01000035
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
16764
16691
-
Trp
CCA
[ENA]
¡û
>W141755664
JNWR01000071
Actinomycetota
Kitasatospora aureofaciens [JNWR]
10302
10375
+
Trp
CCA
[ENA]
¡û
>W141757016
JNXO01001792
Actinomycetota
Kitasatospora misakiensis [JNXO]
126
199
+
Trp
CCA
[ENA]
¡û
>W141759674
JNZN01000140
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
4332
4405
+
Trp
CCA
[ENA]
¡û
>W141761788
JOAY01000039
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
49076
49149
+
Trp
CCA
[ENA]
¡û
>W141761925
JOBB01001140
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
410
483
+
Trp
CCA
[ENA]
¡û
>W141763676
JOCF01000001
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
137055
136982
-
Trp
CCA
[ENA]
¡û
>W141764993
JODB01002150
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
413
486
+
Trp
CCA
[ENA]
¡û
>W141766006
JODS01000006
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
20427
20500
+
Trp
CCA
[ENA]
¡û
>W141767562
JOER01000081
Actinomycetota
Kitasatospora aureofaciens [JOER]
17761
17688
-
Trp
CCA
[ENA]
¡û
>W141768784
JOFK01000063
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
17735
17662
-
Trp
CCA
[ENA]
¡û
>W141770028
JOGF01000377
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
1705
1632
-
Trp
CCA
[ENA]
¡û
>W141770128
JOGG01000068
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
17749
17676
-
Trp
CCA
[ENA]
¡û
>W141771123
JOGY01000542
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
2695
2768
+
Trp
CCA
[ENA]
¡û
>W141771626
JOHH01000013
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
505
578
+
Trp
CCA
[ENA]
¡û
>W141771986
JOHN01000075
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
22966
22893
-
Trp
CCA
[ENA]
¡û
>W141771999
JOHO01000003
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
197482
197555
+
Trp
CCA
[ENA]
¡û
>W141818496
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
2443306
2443379
+
Trp
CCA
[ENA]
¡û
>W141819975
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
3501833
3501906
+
Trp
CCA
[ENA]
¡û
>W1911494810
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
4368673
4368746
+
Trp
CCA
[ENA]
¡û
>W1911495855
OBQK01000006
Actinomycetota
Ornithinimicrobium pekingense USBA17B2 [OBQK]
41685
41612
-
Trp
CCA
[ENA]
¡û
>W1911817439
QZMN01000009
Actinomycetota
Ornithinimicrobium sp. CPCC 203383 [QZMN]
41439
41366
-
Trp
CCA
[ENA]
¡û
>W1810394710
PYBW01000053
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
53364
53437
+
Trp
CCA
[ENA]
¡û
>W1810594907
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
212758
212831
+
Trp
CCA
[ENA]
¡û
>W1810907986
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5087826
5087753
-
Trp
CCA
[ENA]
¡û
>W2010529560
JAAOIV010000003
Actinomycetota
Calidifontibacter sp. DB0510 [JAAOIV]
148126
148053
-
Trp
CCA
[ENA]
¡û
>W2010602969
JABGCV010000001
Actinomycetota
Calidifontibacter sp. DB2511S [JABGCV]
344998
344925
-
Trp
CCA
[ENA]
¡û
>W2010675214
JACCFW010000001
Actinomycetota
Allobranchiibius huperziae DSM 29531 [JACCFW]
2895173
2895100
-
Trp
CCA
[ENA]
¡û
>W2010705636
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
4722997
4723070
+
Trp
CCA
[ENA]
¡û
>W2010705865
JACHJV010000001
Actinomycetota
Kitasatospora kifunensis DSM 41654 [JACHJV]
4800538
4800611
+
Trp
CCA
[ENA]
¡û
>W2011155714
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
4368673
4368746
+
Trp
CCA
[ENA]
¡û
>W2011156759
OBQK01000006
Actinomycetota
Ornithinimicrobium pekingense USBA17B2 [OBQK]
41685
41612
-
Trp
CCA
[ENA]
¡û
>W2011350164
QZMN01000009
Actinomycetota
Ornithinimicrobium sp. CPCC 203383 [QZMN]
41439
41366
-
Trp
CCA
[ENA]
¡û
>W2011388888
RBXE01000001
Actinomycetota
Streptomyces sp. 1114.5 [RBXE]
1957768
1957841
+
Trp
CCA
[ENA]
¡û
>W2011440467
RJSG01000001
Actinomycetota
Marmoricola solisilvae KIS18-7 [RJSG]
269776
269703
-
Trp
CCA
[ENA]
¡û
>W2011491057
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
2885208
2885281
+
Trp
CCA
[ENA]
¡û
>W2011552797
SDVA01000012
Actinomycetota
Serinicoccus sp. GP-T3-3 [SDVA]
38528
38455
-
Trp
CCA
[ENA]
¡û
>W2011616569
SKBS01000011
Actinomycetota
Serinicoccus sp. HY008 [SKBS]
42361
42288
-
Trp
CCA
[ENA]
¡û
>W2011804811
UESZ01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [UESZ]
212758
212831
+
Trp
CCA
[ENA]
¡û
>W2011978877
VCQV01000001
Actinomycetota
Dermacoccaceae bacterium C5-26 [VCQV]
103207
103134
-
Trp
CCA
[ENA]
¡û
>W2012022137
VFPU01000001
Actinomycetota
Ornithinimicrobium humiphilum DSM 12362 [VFPU]
2674156
2674083
-
Trp
CCA
[ENA]
¡û
>W2012029721
VFXM01000014
Actinomycetota
Ornithinimicrobium sp. DSM 17687 [VFXM]
55194
55267
+
Trp
CCA
[ENA]
¡û
>W2012047376
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3122139
3122066
-
Trp
CCA
[ENA]
¡û
>W2012131485
VSLG01000009
Actinomycetota
Serinicoccus sp. P2D13 [VSLG]
100256
100329
+
Trp
CCA
[ENA]
¡û
>W2012230672
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
2356982
2356909
-
Trp
CCA
[ENA]
¡û
>W2110021449
BMEM01000004
Actinomycetota
Ornithinimicrobium tianjinense CGMCC 1.12160 [BMEM]
44263
44190
-
Trp
CCA
[ENA]
¡û
>W2110029891
BMLB01000008
Actinomycetota
Ornithinimicrobium pekingense CGMCC 1.5362 [BMLB]
38613
38540
-
Trp
CCA
[ENA]
¡û
>W2110039425
BMSD01000006
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
26747
26820
+
Trp
CCA
[ENA]
¡û
>W2110042540
BMUB01000013
Actinomycetota
Kitasatospora psammotica JCM 4434 [BMUB]
10399
10472
+
Trp
CCA
[ENA]
¡û
>W2110053248
BNBO01000010
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
161946
161873
-
Trp
CCA
[ENA]
¡û
>W2110053816
BNBY01000006
Actinomycetota
Kitasatospora xanthocidica JCM 4862 [BNBY]
204271
204344
+
Trp
CCA
[ENA]
¡û
>W2110511730
JAFLNG010000034
Actinomycetota
Streptomyces sp. FH025 [JAFLNG]
7756
7829
+
Trp
CCA
[ENA]
¡û
>W2110522572
JAGEKN010000009
Actinomycetota
Allobranchiibius sp. GilTou38 [JAGEKN]
102870
102943
+
Trp
CCA
[ENA]
¡û
>W2110522757
JAGEKR010000020
Actinomycetota
Allobranchiibius sp. CTAmp26 [JAGEKR]
53569
53642
+
Trp
CCA
[ENA]
¡û
>W2110556241
JAGIYX010000016
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
62092
62165
+
Trp
CCA
[ENA]
¡û
>W2110641927
JAHSQD010000074
Actinomycetota
Streptomyces sp. LS1784 [JAHSQD]
3946
4019
+
Trp
CCA
[ENA]
¡û
>W2110645360
JAHTKP010000003
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
104899
104972
+
Trp
CCA
[ENA]
¡û
>C201037012
CP023698
Actinomycetota
Streptomyces viridifaciens ATCC 11989 [CP023698]
4419076
4419149
+
Trp
CCA
-
¡û
>W2110746821
LFMD02000003
Actinomycetota
Kitasatospora sp. SUK 42 [LFMD]
1575652
1575579
-
Trp
CCA
[ENA]
¡û
>W2110748616
MECK01000468
Actinomycetota
Streptomyces sp. CBMA123 [MECK]
36822
36749
-
Trp
CCA
[ENA]
¡û
>C231269040
CP090051
Actinomycetota
Allobranchiibius sp. GilTou73 [CP090051]
1384392
1384465
+
Trp
CCA
-
¡û
>C231284934
CP090841
Actinomycetota
Streptomyces viridifaciens DSM 40239 [CP090841]
4305334
4305407
+
Trp
CCA
-
¡û
>W2110751225
MSJQ01000049
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
27513
27586
+
Trp
CCA
[ENA]
¡û
>C231566206
CP115450
Actinomycetota
Kitasatospora sp. HUAS 3-15 [CP115450]
5064461
5064534
+
Trp
CCA
-
¡û
>C241069689
CP042862
Actinomycetota
Serinicoccus profundi CGMCC 4.5582 [CP042862]
2529485
2529412
-
Trp
CCA
-
¡û
>C241082156
CP043808
Actinomycetota
Serinicoccus marinus DSM 15273 [CP043808]
2527425
2527352
-
Trp
CCA
-
¡û
>C241089198
CP044427
Actinomycetota
Ornithinimicrobium pratense W204 [CP044427]
2617148
2617075
-
Trp
CCA
-
¡û
>C241202568
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
3864647
3864574
-
Trp
CCA
-
¡û
>C241208737
CP108404
Actinomycetota
Kitasatospora sp. NBC_01302 [CP108404]
4065855
4065782
-
Trp
CCA
-
¡û
>C241209691
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
3676574
3676501
-
Trp
CCA
-
¡û
>C241209760
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
3935913
3935840
-
Trp
CCA
-
¡û
>C241210160
CP108476
Actinomycetota
Kitasatospora sp. NBC_01250 [CP108476]
3990595
3990522
-
Trp
CCA
-
¡û
>C241210191
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
5736361
5736434
+
Trp
CCA
-
¡û
>C241210294
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
3756286
3756213
-
Trp
CCA
-
¡û
>C241211714
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
4289500
4289427
-
Trp
CCA
-
¡û
>C241211784
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
4224905
4224832
-
Trp
CCA
-
¡û
>C241321862
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
4071789
4071716
-
Trp
CCA
-
¡û
>W2130039075
JAHZQZ010000202
Actinomycetota
Microbacterium sp. HD4P20 [JAHZQZ]
27458
27531
+
Trp
CCA
[ENA]
¡û
>W1511311677
JPRF01000448
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
11728
11801
+
Trp
CCA
[ENA]
¡û
>W1511529081
JYJF01000061
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
4885
4812
-
Trp
CCA
[ENA]
¡û
>W1511545174
JZKG01000026
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
51211
51138
-
Trp
CCA
[ENA]
¡û
>W1511545233
JZKH01000008
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
116112
116039
-
Trp
CCA
[ENA]
¡û
>W1511555638
JZWY01000183
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
15688
15615
-
Trp
CCA
[ENA]
¡û
>W1511590456
LBHA01000226
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
8322
8395
+
Trp
CCA
[ENA]
¡û
>W1511687902
LFVW01000212
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
1752
1679
-
Trp
CCA
[ENA]
¡û
>W1511696824
LGDO01000515
Actinomycetota
Streptomyces sp. XY431 [LGDO]
15663
15590
-
Trp
CCA
[ENA]
¡û
>W11177030
AFYF01000076
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
38720
38647
-
Trp
CCA
[ENA]
¡û
>WENV067833
AACY023705008
Marine microbial communities from Global Ocean Sampling (GOS)
418
343
-
Trp
CCA
[ENA]
>W1610650794
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
4456092
4456165
+
Trp
CCA
[ENA]
¡û
>W1610722627
LMCT01000012
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
266664
266591
-
Trp
CCA
[ENA]
¡û
>W1610729310
LMHX01000004
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
300170
300097
-
Trp
CCA
[ENA]
¡û
>W1610851118
LQBL01000011
Actinomycetota
Serinicoccus chungangensis [LQBL]
171342
171415
+
Trp
CCA
[ENA]
¡û
>W1610949083
LVCF01000001
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
471216
471141
-
Trp
CCA
[ENA]
¡û
>W1710765849
LIPD01000008
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
283781
283708
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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