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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260454 (66 seq.)
>WENV011627
AACY020316086
Marine microbial communities from Global Ocean Sampling (GOS)
704
781
+
Lys
TTT
[ENA]
>WENV012892
AACY020352457
Marine microbial communities from Global Ocean Sampling (GOS)
1805
1728
-
Lys
TTT
[ENA]
>WENV015711
AACY020442160
Marine microbial communities from Global Ocean Sampling (GOS)
1663
1740
+
Lys
TTT
[ENA]
>WENV015918
AACY020448008
Marine microbial communities from Global Ocean Sampling (GOS)
1179
1256
+
Lys
TTT
[ENA]
>WENV017688
AACY020489838
Marine microbial communities from Global Ocean Sampling (GOS)
1894
1817
-
Lys
TTT
[ENA]
>WENV017804
AACY020492705
Marine microbial communities from Global Ocean Sampling (GOS)
2482
2559
+
Lys
TTT
[ENA]
>WENV020442
AACY020553970
Marine microbial communities from Global Ocean Sampling (GOS)
2448
2525
+
Lys
TTT
[ENA]
>WENV170112026
CEGC01001760
[CEGC] microbial mat metagenome; grass silage
3752
3677
-
Lys
TTT
[ENA]
¡û
>WENV170112176
CEGD01006930
[CEGD] microbial mat metagenome; grass silage
1586
1511
-
Lys
TTT
[ENA]
¡û
>WENV170112177
CEGD01006930
[CEGD] microbial mat metagenome; grass silage
1495
1420
-
Lys
TTT
[ENA]
¡û
>WENV170112296
CEGE01001267
[CEGE] microbial mat metagenome; grass silage
4362
4287
-
Lys
TTT
[ENA]
¡û
>WENV170112297
CEGE01001267
[CEGE] microbial mat metagenome; grass silage
4271
4196
-
Lys
TTT
[ENA]
¡û
>WENV170635486
JDSF01032606
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
4
79
+
Lys
TTT
[ENA]
¡û
>WENV170656134
JTFO01000765
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1320
1245
-
Lys
TTT
[ENA]
¡û
>WENV170656135
JTFO01000765
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1201
1126
-
Lys
TTT
[ENA]
¡û
>WENV170657008
JTFO01069215
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1001
1076
+
Lys
TTT
[ENA]
¡û
>WENV170657009
JTFO01069215
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1092
1167
+
Lys
TTT
[ENA]
¡û
>W141712301
JMQN01000015
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
283212
283287
+
Lys
TTT
[ENA]
¡û
>W141712302
JMQN01000015
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
283305
283380
+
Lys
TTT
[ENA]
¡û
>W141712349
JMQN01000057
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
111777
111702
-
Lys
TTT
[ENA]
¡û
>W141712350
JMQN01000057
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
111660
111585
-
Lys
TTT
[ENA]
¡û
>WENV024235
AACY020790155
Marine microbial communities from Global Ocean Sampling (GOS)
429
506
+
Lys
TTT
[ENA]
>WENV024364
AACY020800929
Marine microbial communities from Global Ocean Sampling (GOS)
43
120
+
Lys
TTT
[ENA]
>WENV025430
AACY020887688
Marine microbial communities from Global Ocean Sampling (GOS)
208
285
+
Lys
TTT
[ENA]
>W1810400712
PYGI01000012
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
1666
1591
-
Lys
TTT
[ENA]
¡û
>W1810400713
PYGI01000012
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
1546
1471
-
Lys
TTT
[ENA]
¡û
>W1810400714
PYGI01000012
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
1426
1351
-
Lys
TTT
[ENA]
¡û
>W1810400740
PYGI01000017
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
9559
9634
+
Lys
TTT
[ENA]
¡û
>W1810400741
PYGI01000017
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
9650
9725
+
Lys
TTT
[ENA]
¡û
>SRA1012155
SRR020493.200834
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
280
205
-
Lys
TTT
[SRA]
>SRA1012739
SRR020493.412453
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
120
195
+
Lys
TTT
[SRA]
>W2011621353
SLWF01000010
Gammaproteobacteria
Shewanella fodinae 74A [SLWF]
68125
68200
+
Lys
TTT
[ENA]
¡û
>W2011621355
SLWF01000010
Gammaproteobacteria
Shewanella fodinae 74A [SLWF]
68335
68410
+
Lys
TTT
[ENA]
¡û
>WENV032700
AACY021468135
Marine microbial communities from Global Ocean Sampling (GOS)
662
585
-
Lys
TTT
[ENA]
>W2110026491
BMIJ01000007
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
278694
278769
+
Lys
TTT
[ENA]
¡û
>W2110048194
BMXW01000001
Gammaproteobacteria
Shewanella fodinae KCTC 22506 [BMXW]
40401
40326
-
Lys
TTT
[ENA]
¡û
>W2110048196
BMXW01000001
Gammaproteobacteria
Shewanella fodinae KCTC 22506 [BMXW]
40191
40116
-
Lys
TTT
[ENA]
¡û
>W2110518018
JAFNJD010000001
Gammaproteobacteria
Shewanella sp. 4t3-1-2LB [JAFNJD]
126589
126664
+
Lys
TTT
[ENA]
¡û
>W2110518020
JAFNJD010000001
Gammaproteobacteria
Shewanella sp. 4t3-1-2LB [JAFNJD]
126799
126874
+
Lys
TTT
[ENA]
¡û
>W2110640680
JAHREP010000008
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
73
1
-
Lys
TTT
[ENA]
¡û
>W2110640697
JAHREP010000017
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
2
77
+
Lys
TTT
[ENA]
¡û
>C211000182
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
3451380
3451305
-
Lys
TTT
-
¡û
>C211000183
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
3451280
3451205
-
Lys
TTT
-
¡û
>C211032099
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3179350
3179275
-
Lys
TTT
-
¡û
>C211032100
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3179259
3179184
-
Lys
TTT
-
¡û
>C211322003
CP073587
Gammaproteobacteria
Shewanella sp. FJAT-54481 [CP073587]
1760343
1760418
+
Lys
TTT
-
¡û
>C231011336
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4687460
4687385
-
Lys
TTT
-
¡û
>WENV035503
AACY021700551
Marine microbial communities from Global Ocean Sampling (GOS)
124
47
-
Lys
TTT
[ENA]
>WENV004099
AACY020114954
Marine microbial communities from Global Ocean Sampling (GOS)
2334
2411
+
Lys
TTT
[ENA]
>WENV041872
AACY022193234
Marine microbial communities from Global Ocean Sampling (GOS)
193
116
-
Lys
TTT
[ENA]
>WENV044128
AACY022391152
Marine microbial communities from Global Ocean Sampling (GOS)
89
12
-
Lys
TTT
[ENA]
>WENV045343
AACY022508269
Marine microbial communities from Global Ocean Sampling (GOS)
98
21
-
Lys
TTT
[ENA]
>WENV045636
AACY022536889
Marine microbial communities from Global Ocean Sampling (GOS)
466
389
-
Lys
TTT
[ENA]
>WENV049801
AACY022824615
Marine microbial communities from Global Ocean Sampling (GOS)
330
407
+
Lys
TTT
[ENA]
>WENV004946
AACY020138556
Marine microbial communities from Global Ocean Sampling (GOS)
272
349
+
Lys
TTT
[ENA]
>WENV050089
AACY022844382
Marine microbial communities from Global Ocean Sampling (GOS)
123
46
-
Lys
TTT
[ENA]
>WENV051074
AACY022928859
Marine microbial communities from Global Ocean Sampling (GOS)
569
646
+
Lys
TTT
[ENA]
>WENV005689
AACY020159121
Marine microbial communities from Global Ocean Sampling (GOS)
926
849
-
Lys
TTT
[ENA]
>WENV065279
AACY023585543
Marine microbial communities from Global Ocean Sampling (GOS)
311
234
-
Lys
TTT
[ENA]
>WENV065336
AACY023588647
Marine microbial communities from Global Ocean Sampling (GOS)
515
438
-
Lys
TTT
[ENA]
>WENV065362
AACY023590307
Marine microbial communities from Global Ocean Sampling (GOS)
1017
1094
+
Lys
TTT
[ENA]
>WENV007905
AACY020210030
Marine microbial communities from Global Ocean Sampling (GOS)
1823
1900
+
Lys
TTT
[ENA]
>WENV008786
AACY020236089
Marine microbial communities from Global Ocean Sampling (GOS)
1451
1528
+
Lys
TTT
[ENA]
>W1710533768
FNRJ01000013
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
53643
53718
+
Lys
TTT
[ENA]
¡û
>W1710533769
FNRJ01000013
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
53734
53809
+
Lys
TTT
[ENA]
¡û
>W1710551434
FOGB01000010
Gammaproteobacteria
Amphritea atlantica [FOGB]
95
20
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK