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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260610 (36 seq.)
>W131231214
AUIH01000006
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
86439
86364
-
Val
TAC
[ENA]
¡û
>W131231217
AUIH01000006
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
85999
85924
-
Val
TAC
[ENA]
¡û
>w014082
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161870
161947
+
Val
TAC
[ENA]
¡û
>w014080
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161660
161737
+
Val
TAC
[ENA]
¡û
>w014077
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161214
161291
+
Val
TAC
[ENA]
¡û
>WENV170682355
LFIK01000016
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
51844
51769
-
Val
TAC
[ENA]
¡û
>WENV170682357
LFIK01000016
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
51570
51495
-
Val
TAC
[ENA]
¡û
>C181010968
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1072026
1072101
+
Val
TAC
-
¡û
>C181010971
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1073068
1073143
+
Val
TAC
-
¡û
>C181010973
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1073519
1073594
+
Val
TAC
-
¡û
>C181200152
CP031415
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [CP031415]
1231235
1231310
+
Val
TAC
-
¡û
>C181200155
CP031415
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [CP031415]
1231770
1231845
+
Val
TAC
-
¡û
>W1911708840
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
57644
57719
+
Val
TAC
[ENA]
¡û
>W1911708842
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
57834
57909
+
Val
TAC
[ENA]
¡û
>W1911708844
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
58148
58223
+
Val
TAC
[ENA]
¡û
>W1810477906
QAPE01000012
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [QAPE]
76
1
-
Val
TAC
[ENA]
¡û
>W1810477922
QAPE01000089
Gammaproteobacteria
Saccharospirillum mangrovi HK-33 [QAPE]
458
533
+
Val
TAC
[ENA]
¡û
>C151017312
CP007142
Gammaproteobacteria
Gynuella sunshinyii YC6258 [CP007142]
2594824
2594899
+
Val
TAC
[Ensembl]
¡û
>W2011282473
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
57644
57719
+
Val
TAC
[ENA]
¡û
>W2011282475
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
57834
57909
+
Val
TAC
[ENA]
¡û
>W2011282477
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
58148
58223
+
Val
TAC
[ENA]
¡û
>W2011398722
RCIP01000001
Gammaproteobacteria
Saccharospirillum sp. LZ-5 [RCIP]
100483
100558
+
Val
TAC
[ENA]
¡û
>W2011398725
RCIP01000001
Gammaproteobacteria
Saccharospirillum sp. LZ-5 [RCIP]
100851
100926
+
Val
TAC
[ENA]
¡û
>W2011398727
RCIP01000001
Gammaproteobacteria
Saccharospirillum sp. LZ-5 [RCIP]
101269
101344
+
Val
TAC
[ENA]
¡û
>W2011626420
SLZR01000008
Gammaproteobacteria
Reinekea marinisedimentorum DSM 15388 [SLZR]
126557
126632
+
Val
TAC
[ENA]
¡û
>W2011626422
SLZR01000008
Gammaproteobacteria
Reinekea marinisedimentorum DSM 15388 [SLZR]
126879
126954
+
Val
TAC
[ENA]
¡û
>W2011679427
SRMF01000001
Gammaproteobacteria
Natronospirillum operossus G-116 [SRMF]
354487
354562
+
Val
TAC
[ENA]
¡û
>W2011679429
SRMF01000001
Gammaproteobacteria
Natronospirillum operossus G-116 [SRMF]
354747
354822
+
Val
TAC
[ENA]
¡û
>W2012066965
VKAD01000001
Gammaproteobacteria
Reinekea sp. SSH23 [VKAD]
1238379
1238304
-
Val
TAC
[ENA]
¡û
>W2012066967
VKAD01000001
Gammaproteobacteria
Reinekea sp. SSH23 [VKAD]
1238045
1237970
-
Val
TAC
[ENA]
¡û
>W2110047969
BMXR01000008
Gammaproteobacteria
Saccharospirillum salsuginis KCTC 22169 [BMXR]
97044
97119
+
Val
TAC
[ENA]
¡û
>W2110047971
BMXR01000008
Gammaproteobacteria
Saccharospirillum salsuginis KCTC 22169 [BMXR]
97648
97723
+
Val
TAC
[ENA]
¡û
>W2110371040
JADPQG010000001
Gammaproteobacteria
Reinekea sp. G2M2-21 [JADPQG]
543358
543433
+
Val
TAC
[ENA]
¡û
>W2110371042
JADPQG010000001
Gammaproteobacteria
Reinekea sp. G2M2-21 [JADPQG]
543676
543751
+
Val
TAC
[ENA]
¡û
>W2110611257
JAHKPH010000009
Gammaproteobacteria
Reinekea forsetii G2M07 [JAHKPH]
14
89
+
Val
TAC
[ENA]
¡û
>W2110611273
JAHKPH010000011
Gammaproteobacteria
Reinekea forsetii G2M07 [JAHKPH]
473815
473890
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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