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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260619 (57 seq.)
>W1710899478
LNIZ01000003
Actinomycetota
Trueperella bernardiae [LNIZ]
3763
3690
-
Glu
TTC
[ENA]
¡û
>W1711184923
LWMY01000008
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
3617
3544
-
Glu
TTC
[ENA]
¡û
>W1711185077
LWNB01000032
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
3617
3544
-
Glu
TTC
[ENA]
¡û
>W1711772092
MVGS01000087
Actinomycetota
Trueperella pyogenes [MVGS]
11041
10968
-
Glu
TTC
[ENA]
¡û
>WENV180344775
OBLL01177545
[OBLL] soil metagenome; soil
205
278
+
Glu
TTC
[ENA]
¡û
>W141284190
JALQ01000044
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
13251
13178
-
Glu
TTC
[ENA]
¡û
>WENV183707011
PDWI01006355
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14326
14399
+
Glu
TTC
[ENA]
¡û
>WENV170143489
CENY01075548
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
181
106
-
Glu
TTC
[ENA]
¡û
>WENV170196401
CEPK01041519
[CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
27452
27377
-
Glu
TTC
[ENA]
¡û
>WENV170415016
CEUL01011385
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
98
-
Glu
TTC
[ENA]
¡û
>WENV170510510
CEVZ01007056
[CEVZ] marine metagenome genome assembly TARA_041_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
181
106
-
Glu
TTC
[ENA]
¡û
>WENV170736494
LULM01005360
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
137
212
+
Glu
TTC
[ENA]
¡û
>WENV170737176
LULN01004803
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
694
769
+
Glu
TTC
[ENA]
¡û
>WENV170745861
LULZ01000289
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
2822
2897
+
Glu
TTC
[ENA]
¡û
>WENV170754398
LUML01006312
[LUML] marine metagenome; Red Sea water column Station 22 - depth 10m
198
123
-
Glu
TTC
[ENA]
¡û
>WENV170829275
MDSZ01005789
[MDSZ] marine metagenome; seawater
5291
5216
-
Glu
TTC
[ENA]
¡û
>WENV170846015
MDTA01034866
[MDTA] marine metagenome; seawater
2303
2228
-
Glu
TTC
[ENA]
¡û
>WENV170974777
MTKY01074014
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1090
1017
-
Glu
TTC
[ENA]
¡û
>C181168811
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
1897825
1897752
-
Glu
TTC
-
¡û
>C181171269
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
649950
650023
+
Glu
TTC
-
¡û
>C181171496
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
1070698
1070771
+
Glu
TTC
-
¡û
>C191114702
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
2145364
2145291
-
Glu
TTC
-
¡û
>C191114753
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1209606
1209533
-
Glu
TTC
-
¡û
>C191114790
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1624086
1624159
+
Glu
TTC
-
¡û
>C191114838
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
1870975
1870902
-
Glu
TTC
-
¡û
>W1810085246
PESV01000003
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
134781
134854
+
Glu
TTC
[ENA]
¡û
>W1810187916
PKHY01000002
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
105223
105150
-
Glu
TTC
[ENA]
¡û
>W1810484113
QASM01000015
Actinomycetota
Trueperella pyogenes SH01 [QASM]
4185
4258
+
Glu
TTC
[ENA]
¡û
>WENV028396
AACY021118815
Marine microbial communities from Global Ocean Sampling (GOS)
216
141
-
Glu
TTC
[ENA]
>C151015775
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
2007808
2007881
+
Glu
TTC
[Ensembl]
¡û
>C151026364
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
1897914
1897841
-
Glu
TTC
[Ensembl]
¡û
>C151096848
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
368549
368622
+
Glu
TTC
-
¡û
>W2010715409
JACHWO010000007
Actinomycetota
Trueperella pyogenes DSM 20630 [JACHWO]
26032
25959
-
Glu
TTC
[ENA]
¡û
>W2011487163
RSAH02000006
Actinomycetota
Trueperella pyogenes SH02 [RSAH]
4331
4258
-
Glu
TTC
[ENA]
¡û
>W2011495181
RWKU01000020
Actinomycetota
Trueperella pyogenes SH03 [RWKU]
4337
4264
-
Glu
TTC
[ENA]
¡û
>W2011604181
SJDT01000004
Actinomycetota
Arcanobacterium sp. C605018/01/1 [SJDT]
82457
82384
-
Glu
TTC
[ENA]
¡û
>W2011676265
SPVE01000015
Actinomycetota
Trueperella pyogenes SH01 [SPVE]
4185
4258
+
Glu
TTC
[ENA]
¡û
>W2011844197
UHHW01000002
Actinomycetota
Trueperella pyogenes NCTC5224 [UHHW]
1896099
1896172
+
Glu
TTC
[ENA]
¡û
>W2011951015
UWOS01000003
Actinomycetota
Arcanobacterium sp. Marseille-P5647 [UWOS]
251596
251669
+
Glu
TTC
[ENA]
¡û
>W2110459226
JAFBCS010000001
Actinomycetota
Arcanobacterium pluranimalium DSM 13483 [JAFBCS]
46440
46513
+
Glu
TTC
[ENA]
¡û
>C211093449
CP053291
Actinomycetota
Trueperella pecoris 19M2397 [CP053291]
1838374
1838447
+
Glu
TTC
-
¡û
>C211173361
CP063212
Actinomycetota
Trueperella pecoris 19OD0592 [CP063212]
340637
340564
-
Glu
TTC
-
¡û
>C211173404
CP063213
Actinomycetota
Trueperella pecoris 15A0121 [CP063213]
316783
316710
-
Glu
TTC
-
¡û
>C211298678
CP071974
Actinomycetota
Trueperella pecoris 15IMD0307 [CP071974]
301157
301084
-
Glu
TTC
-
¡û
>W2110715914
JAJAEJ010000173
Actinomycetota
Demequina sp. TTPB684 [JAJAEJ]
10160
10233
+
Glu
TTC
[ENA]
¡û
>C231172081
CP081508
Actinomycetota
Trueperella pyogenes EMSSI21 [CP081508]
308184
308111
-
Glu
TTC
-
¡û
>C231368925
CP096279
Actinomycetota
Trueperella pyogenes EMSSI54 [CP096279]
279408
279335
-
Glu
TTC
-
¡û
>C231368969
CP096280
Actinomycetota
Trueperella pyogenes EMSSI48 [CP096280]
282200
282127
-
Glu
TTC
-
¡û
>C231380819
CP097247
Actinomycetota
Trueperella pyogenes 22/KM0800 [CP097247]
304093
304020
-
Glu
TTC
-
¡û
>C241146609
CP050810
Actinomycetota
Trueperella pyogenes jx18 [CP050810]
2262757
2262684
-
Glu
TTC
-
¡û
>C241247591
CP123393
Actinomycetota
Trueperella pyogenes 09KM1269 [CP123393]
1924608
1924535
-
Glu
TTC
-
¡û
>C241247634
CP123400
Actinomycetota
Trueperella pyogenes 13KM1326 [CP123400]
1837027
1836954
-
Glu
TTC
-
¡û
>C241247663
CP123403
Actinomycetota
Trueperella pyogenes 13OD0707 [CP123403]
407636
407709
+
Glu
TTC
-
¡û
>C241274836
CP127099
Actinomycetota
Trueperella bernardiae UMB8254 [CP127099]
1673289
1673362
+
Glu
TTC
-
¡û
>C241308873
CP133407
Actinomycetota
Trueperella abortisuis KKAHC01 [CP133407]
2383973
2383900
-
Glu
TTC
-
¡û
>W1610759881
LNIZ01000003
Actinomycetota
Trueperella bernardiae [LNIZ]
3763
3690
-
Glu
TTC
[ENA]
¡û
>W1710743617
LGYI01000002
Actinomycetota
Trueperella bernardiae [LGYI]
104970
104897
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK