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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260622 (30 seq.)
>W1710892976
LNEH01000120
Verrucomicrobiota
Verrucomicrobia bacterium Ga0077533 [LNEH]
26697
26772
+
Gly
GCC
[ENA]
¡û
>W1711050760
LRRQ01000141
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
19061
18986
-
Gly
GCC
[ENA]
¡û
>C171046059
CP016094
Verrucomicrobiota
Lacunisphaera limnophila IG16b [CP016094]
2854926
2855001
+
Gly
GCC
-
¡û
>WENV180021100
FTDT01000223
[FTDT] metagenome; soil
2172
2097
-
Gly
GCC
[ENA]
¡û
>WENV180256126
OBEQ010788413
[OBEQ] groundwater metagenome; groundwater
16510
16435
-
Gly
GCC
[ENA]
¡û
>WENV180270966
OBEQ012223263
[OBEQ] groundwater metagenome; groundwater
2
77
+
Gly
GCC
[ENA]
¡û
>WENV180344093
OBLK01226626
[OBLK] soil metagenome; Clay
135
210
+
Gly
GCC
[ENA]
¡û
>WENV180391345
OBPM01097866
[OBPM] marine metagenome; ENVO:00002010
283
358
+
Gly
GCC
[ENA]
¡û
>WENV180694649
OCZS012523145
[OCZS] soil metagenome; soil
158
83
-
Gly
GCC
[ENA]
¡û
>WENV181144986
OEHO01150806
[OEHO] metagenome; unknown
15
90
+
Gly
GCC
[ENA]
¡û
>WENV181387153
OFRL01049846
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
267
192
-
Gly
GCC
[ENA]
¡û
>WENV181416308
OGCL01071632
[OGCL] hot springs metagenome; Hot spring water
491
416
-
Gly
GCC
[ENA]
¡û
>C08007077
CP001032
Verrucomicrobiota
Opitutus terrae PB90-1 [CP001032]
2702086
2702161
+
Gly
GCC
[Ensembl]
¡û
>WENV183679184
ORMF010026419
[ORMF] groundwater metagenome; groundwater
821
746
-
Gly
GCC
[ENA]
¡û
>WENV183680949
ORMF010243167
[ORMF] groundwater metagenome; groundwater
765
690
-
Gly
GCC
[ENA]
¡û
>WENV183688552
ORMF011305906
[ORMF] groundwater metagenome; groundwater
158
233
+
Gly
GCC
[ENA]
¡û
>WENV183697053
OUNJ010001506
[OUNJ] metagenome; soil
3601
3676
+
Gly
GCC
[ENA]
¡û
>WENV170555638
CXWL01001517
[CXWL] groundwater metagenome; biofilm material
54097
54022
-
Gly
GCC
[ENA]
¡û
>C181079153
CP023344
Verrucomicrobiota
Nibricoccus aquaticus HZ-65 [CP023344]
731287
731212
-
Gly
GCC
-
¡û
>W1810487888
QAYX01000010
Verrucomicrobiota
Opitutus sp. ER46 [QAYX]
29337
29262
-
Gly
GCC
[ENA]
¡û
>W1810487958
QAYY01000011
Verrucomicrobiota
Opitutaceae bacterium EW11 [QAYY]
379003
379078
+
Gly
GCC
[ENA]
¡û
>C151016759
CP007053
Verrucomicrobiota
Opitutaceae bacterium TAV5 [CP007053]
5400609
5400534
-
Gly
GCC
[Ensembl]
¡û
>SRA1028402
SRR035086.318112
454 Sequencing (SRP001807)
166
241
+
Gly
GCC
[SRA]
>W2011544630
SDHX01000001
Verrucomicrobiota
Lacunisphaera sp. TWA-58 [SDHX]
1637138
1637213
+
Gly
GCC
[ENA]
¡û
>W2110286975
JACYFG010000013
Verrucomicrobiota
Pelagicoccus enzymogenes NFK12 [JACYFG]
69634
69559
-
Gly
GCC
[ENA]
¡û
>C211379565
CP080507
Verrucomicrobiota
Oleiharenicola sp. KSB-15 [CP080507]
3138672
3138597
-
Gly
GCC
-
¡û
>W121010403
AGJF01000001
Verrucomicrobiota
Opitutaceae bacterium TAV5 [AGJF]
172203
172128
-
Gly
GCC
[ENA]
¡û
>W121034600
AHKS02000049
Verrucomicrobiota
Opitutaceae bacterium TAV1 [AHKS]
16487
16562
+
Gly
GCC
[ENA]
¡û
>W1610753242
LNEH01000120
Verrucomicrobiota
Verrucomicrobia bacterium Ga0077533 [LNEH]
26697
26772
+
Gly
GCC
[ENA]
¡û
>W1610891889
LRRQ01000141
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
19061
18986
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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