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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260769 (40 seq.)
>WENV181164586
OEIR01244600
[OEIR] soil metagenome; soil
93
166
+
Phe
GAA
[ENA]
¡û
>WENV181854693
OGWK01012418
[OGWK] freshwater metagenome; freshwater
661
734
+
Phe
GAA
[ENA]
¡û
>WENV170646041
JQGF01013807
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
200
125
-
Phe
GAA
[ENA]
¡û
>W1810532612
QCYL01000004
Bacteroidota
Chitinophaga costaii A37T2 [QCYL]
127162
127235
+
Phe
GAA
[ENA]
¡û
>W1810682111
QKTW01000007
Bacteroidota
Taibaiella soli R1-15 [QKTW]
107030
106957
-
Phe
GAA
[ENA]
¡û
>W1810695371
QLNL01000001
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
1455705
1455632
-
Phe
GAA
[ENA]
¡û
>W1810721921
QNTR01000001
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
398882
398955
+
Phe
GAA
[ENA]
¡û
>W1810762366
QPMM01000004
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
192632
192705
+
Phe
GAA
[ENA]
¡û
>W2010106731
BKAT01000030
Bacteroidota
Chitinophaga terrae Kim and Jung 2007 NBRC 109751 [BKAT]
48539
48466
-
Phe
GAA
[ENA]
¡û
>W2010169465
CABFVU010000001
Bacteroidota
Chitinophaga polysaccharea CSUR P9684 [CABFVU]
2419358
2419285
-
Phe
GAA
[ENA]
¡û
>W2010586305
JABAOB010000014
Bacteroidota
Chitinophaga sp. Ak27 [JABAOB]
96351
96424
+
Phe
GAA
[ENA]
¡û
>W2011639977
SMSK01000023
Bacteroidota
Segetibacter sp. 3557_3 [SMSK]
41021
41094
+
Phe
GAA
[ENA]
¡û
>W2011652393
SNZS01000002
Bacteroidota
Chitinophaga sp. OK723 [SNZS]
715434
715507
+
Phe
GAA
[ENA]
¡û
>W2012002610
VEHN01000002
Bacteroidota
Filimonas lacunae DE0057 [VEHN]
471159
471084
-
Phe
GAA
[ENA]
¡û
>W2012048621
VIWO01000001
Bacteroidota
Chitinophaga polysaccharea 1209 [VIWO]
677083
677156
+
Phe
GAA
[ENA]
¡û
>W2012202879
VWWO01000001
Bacteroidota
Chitinophaga sp. Cy-1792 [VWWO]
661698
661771
+
Phe
GAA
[ENA]
¡û
>W2012349110
WJFD01000002
Bacteroidota
Chitinophaga sp. SYP-B3965 [WJFD]
333829
333756
-
Phe
GAA
[ENA]
¡û
>W2110546659
JAGHKP010000002
Bacteroidota
Chitinophaga chungangae MAH-28 [JAGHKP]
867629
867556
-
Phe
GAA
[ENA]
¡û
>W2110575292
JAGTXB010000001
Bacteroidota
Chitinophaga sp. 2R12 [JAGTXB]
194185
194258
+
Phe
GAA
[ENA]
¡û
>W2110597229
JAHEAH010000004
Bacteroidota
Flavihumibacter sp. IMCC34838 [JAHEAH]
224203
224276
+
Phe
GAA
[ENA]
¡û
>W2110597250
JAHEAI010000001
Bacteroidota
Flavihumibacter sp. IMCC34837 [JAHEAI]
3588038
3588111
+
Phe
GAA
[ENA]
¡û
>W2110694345
JAIQXE010000003
Bacteroidota
Flavihumibacter profundi KCTC 62290 [JAIQXE]
830067
830140
+
Phe
GAA
[ENA]
¡û
>W1510019440
BBWV01000001
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
1593894
1593967
+
Phe
GAA
[ENA]
¡û
>C231156265
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
6354250
6354323
+
Phe
GAA
-
¡û
>W2110748391
MBUA01000029
Bacteroidota
Flavihumibacter stibioxidans YS-17 [MBUA]
199112
199039
-
Phe
GAA
[ENA]
¡û
>C231314632
CP092333
Bacteroidota
Flavihumibacter fluminis (ex Park et al. 2022) IMCC34837 [CP092333]
3800282
3800355
+
Phe
GAA
-
¡û
>C231314671
CP092334
Bacteroidota
Flavihumibacter rivuli IMCC34838 [CP092334]
3158540
3158613
+
Phe
GAA
-
¡û
>C241149351
CP051205
Bacteroidota
Chitinophaga oryzae 1310 [CP051205]
6500445
6500518
+
Phe
GAA
-
¡û
>W1511300710
JPHF01000003
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
195038
194965
-
Phe
GAA
[ENA]
¡û
>W1511387754
JSVC01000001
Bacteroidota
Flavihumibacter solisilvae 3-3 [JSVC]
258990
258917
-
Phe
GAA
[ENA]
¡û
>C161092526
CP015971
Bacteroidota
Arachidicoccus sp. BS20 [CP015971]
1917452
1917527
+
Phe
GAA
[Ensembl]
¡û
>WENV069722
AACY023781022
Marine microbial communities from Global Ocean Sampling (GOS)
1127
1052
-
Phe
GAA
[ENA]
>W1610514953
FMAR01000002
Bacteroidota
Chitinophaga costaii [FMAR]
127350
127423
+
Phe
GAA
[ENA]
¡û
>W1610935535
LUKG01000070
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
25768
25843
+
Phe
GAA
[ENA]
¡û
>WENV077678
AAFX01086216
Soil microbial communities from Minnesota Farm
460
383
-
Phe
GAA
[ENA]
>W1710500643
FMAR01000002
Bacteroidota
Chitinophaga costaii [FMAR]
127350
127423
+
Phe
GAA
[ENA]
¡û
>W1710533876
FNRL01000017
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
48873
48800
-
Phe
GAA
[ENA]
¡û
>W1710555277
FOJG01000001
Bacteroidota
Chitinophaga arvensicola [FOJG]
727865
727938
+
Phe
GAA
[ENA]
¡û
>W1710594145
FSRA01000002
Bacteroidota
Chitinophaga niabensis [FSRA]
1019594
1019521
-
Phe
GAA
[ENA]
¡û
>W1710604528
FUZZ01000003
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
575250
575323
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK