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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260796 (53 seq.)
>W1710870317
LMKK01000002
Actinomycetota
Agreia sp. Leaf210 [LMKK]
115406
115481
+
Lys
TTT
[ENA]
¡û
>W1710872336
LMLX01000002
Actinomycetota
Agreia sp. Leaf244 [LMLX]
116831
116906
+
Lys
TTT
[ENA]
¡û
>W1710873956
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
1838490
1838415
-
Lys
TTT
[ENA]
¡û
>W1710875768
LMOQ01000003
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
770142
770067
-
Lys
TTT
[ENA]
¡û
>W131216951
ATWH01000010
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
155804
155729
-
Lys
TTT
[ENA]
¡û
>WENV180017011
FSWJ01000442
[FSWJ] metagenome; soil
84930
85004
+
Lys
TTT
[ENA]
¡û
>WENV180017266
FSWR01000032
[FSWR] metagenome; soil
117989
117915
-
Lys
TTT
[ENA]
¡û
>WENV180020867
FTDF01000080
[FTDF] metagenome; soil
695
621
-
Lys
TTT
[ENA]
¡û
>WENV180023882
FTIF01003086
[FTIF] metagenome; soil
198
124
-
Lys
TTT
[ENA]
¡û
>WENV180029224
FTJI01223508
[FTJI] metagenome; soil
954
880
-
Lys
TTT
[ENA]
¡û
>WENV180030810
FTJN01086879
[FTJN] metagenome; soil
297
223
-
Lys
TTT
[ENA]
¡û
>WENV180034744
FTKR01215967
[FTKR] metagenome; soil
954
880
-
Lys
TTT
[ENA]
¡û
>W141188664
AYMV01000016
Actinomycetota
Leucobacter sp. PH1c [AYMV]
35945
36018
+
Lys
TTT
[ENA]
¡û
>WENV183697327
OUNJ010379598
[OUNJ] metagenome; soil
462
536
+
Lys
TTT
[ENA]
¡û
>WENV170700575
LIDZ01015590
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
4539
4464
-
Lys
TTT
[ENA]
¡û
>C181143932
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
2290354
2290428
+
Lys
TTT
-
¡û
>C191146774
CP035806
Actinomycetota
Leucobacter triazinivorans JW-1 [CP035806]
2745182
2745109
-
Lys
TTT
-
¡û
>W1910374304
FUID01000092
Actinomycetota
7(1) [FUID]
7878
7805
-
Lys
TTT
[ENA]
¡û
>W1810282001
PSXW01000014
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
27346
27272
-
Lys
TTT
[ENA]
¡û
>W1810364712
PVTL01000006
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
329321
329247
-
Lys
TTT
[ENA]
¡û
>W1810569049
QEFB01000007
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
60479
60553
+
Lys
TTT
[ENA]
¡û
>W2010108471
BKDJ01000016
Actinomycetota
Arthrobacter sp. NCCP-1664 [BKDJ]
21427
21501
+
Lys
TTT
[ENA]
¡û
>W2010473583
JAAIJZ010000001
Actinomycetota
Canibacter sp. ZJ784 [JAAIJZ]
817406
817333
-
Lys
TTT
[ENA]
¡û
>W2010473646
JAAIKA010000002
Actinomycetota
Canibacter sp. ZJ955 [JAAIKA]
195732
195805
+
Lys
TTT
[ENA]
¡û
>W2010498956
JAALGE010000011
Actinomycetota
Marisediminicola sp. SM7 A14 [JAALGE]
41064
40990
-
Lys
TTT
[ENA]
¡û
>W2010709751
JACHMJ010000001
Actinomycetota
Conyzicola lurida DSM 105784 [JACHMJ]
280251
280177
-
Lys
TTT
[ENA]
¡û
>W2011403431
RCUV01000006
Actinomycetota
Mycetocola manganoxydans CCTCC AB209002 [RCUV]
210014
209940
-
Lys
TTT
[ENA]
¡û
>W2011404197
RCWJ01000001
Actinomycetota
Mycetocola zhadangensis ZD1-4 [RCWJ]
223695
223621
-
Lys
TTT
[ENA]
¡û
>W2011458317
RPDI01000032
Actinomycetota
Leucobacter chromiireducens LYC-2 [RPDI]
21385
21458
+
Lys
TTT
[ENA]
¡û
>W2011579428
SHKI01000004
Actinomycetota
Leucobacter luti RF6 [SHKI]
387450
387523
+
Lys
TTT
[ENA]
¡û
>W2011600603
SISG01000001
Actinomycetota
Glaciihabitans sp. RP-3-7 [SISG]
2024959
2025033
+
Lys
TTT
[ENA]
¡û
>W2011634041
SMGC01000008
Actinomycetota
Leucobacter luti BIGb0106 [SMGC]
347669
347742
+
Lys
TTT
[ENA]
¡û
>W2011650074
SNYA01000001
Actinomycetota
Leucobacter luti JUb18 [SNYA]
361161
361234
+
Lys
TTT
[ENA]
¡û
>W2110021323
BMEK01000001
Actinomycetota
Mycetocola zhadangensis CGMCC 1.12042 [BMEK]
222233
222159
-
Lys
TTT
[ENA]
¡û
>W2110047707
BMXM01000005
Actinomycetota
Mycetocola manganoxydans KCTC 19753 [BMXM]
210002
209928
-
Lys
TTT
[ENA]
¡û
>W2110328840
JADKRN010000004
Actinomycetota
Agreia pratensis VKM Ac-2874 [JADKRN]
304596
304522
-
Lys
TTT
[ENA]
¡û
>W2110639198
JAHQZR010000012
Actinomycetota
Leucobacter sp. NC76-1 [JAHQZR]
13009
12936
-
Lys
TTT
[ENA]
¡û
>C211379354
CP080492
Actinomycetota
Leucobacter luti Wa41.01b-2 [CP080492]
2682864
2682937
+
Lys
TTT
-
¡û
>C211394975
CP082322
Actinomycetota
Leucobacter sp. NB 10 [CP082322]
2703104
2703177
+
Lys
TTT
-
¡û
>C211410949
LR882035
Actinomycetota
Agreia sp. COWG [LR882035]
2322698
2322772
+
Lys
TTT
-
¡û
>W2110761940
QYAB01000001
Actinomycetota
Leucobacter zeae CC-MF41 [QYAB]
723947
723874
-
Lys
TTT
[ENA]
¡û
>W2110761970
QYAC01000002
Actinomycetota
Leucobacter chromiireducens subsp. solipictus TAN 31504 [QYAC]
477890
477817
-
Lys
TTT
[ENA]
¡û
>W2110762015
QYAD01000001
Actinomycetota
Leucobacter chromiireducens subsp. chromiireducens L-1 [QYAD]
624965
624892
-
Lys
TTT
[ENA]
¡û
>W2110762105
QYAG01000001
Actinomycetota
Leucobacter luti RF6 [QYAG]
921562
921635
+
Lys
TTT
[ENA]
¡û
>W1511524506
JYFC01000002
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
676429
676354
-
Lys
TTT
[ENA]
¡û
>W1610732663
LMKK01000002
Actinomycetota
Agreia sp. Leaf210 [LMKK]
115406
115481
+
Lys
TTT
[ENA]
¡û
>W1610734682
LMLX01000002
Actinomycetota
Agreia sp. Leaf244 [LMLX]
116831
116906
+
Lys
TTT
[ENA]
¡û
>W1610736302
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
1838490
1838415
-
Lys
TTT
[ENA]
¡û
>W1610738114
LMOQ01000003
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
770142
770067
-
Lys
TTT
[ENA]
¡û
>W1710570937
FOVM01000011
Actinomycetota
Mycetocola miduiensis [FOVM]
9847
9772
-
Lys
TTT
[ENA]
¡û
>W1710602498
FUYG01000003
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
477724
477649
-
Lys
TTT
[ENA]
¡û
>W1710608525
FXAY01000002
Actinomycetota
Agreia pratensis [FXAY]
751437
751362
-
Lys
TTT
[ENA]
¡û
>W1710609314
FXWI01000003
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
775317
775242
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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