This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260820 (125 seq.)
>W1711463060
MJII01000001
Bacillota
Intestinimonas butyriciproducens [MJII]
3041649
3041724
+
Ala
TGC
[ENA]
¡û
>W1711463066
MJII01000001
Bacillota
Intestinimonas butyriciproducens [MJII]
2289883
2289808
-
Ala
TGC
[ENA]
¡û
>C171010368
CP011307
Bacillota
Intestinimonas butyriciproducens AF211 [CP011307]
632960
633035
+
Ala
TGC
-
¡û
>C171010387
CP011307
Bacillota
Intestinimonas butyriciproducens AF211 [CP011307]
3290671
3290596
-
Ala
TGC
-
¡û
>WENV180135363
OATK01027040
[OATK] human gut metagenome; faeces
613
538
-
Ala
TGC
[ENA]
¡û
>WENV180154137
OAUS01020593
[OAUS] human gut metagenome; faeces
113
188
+
Ala
TGC
[ENA]
¡û
>WENV180159896
OAVB01027664
[OAVB] human gut metagenome; faeces
190
265
+
Ala
TGC
[ENA]
¡û
>WENV180167221
OAVO01009217
[OAVO] human gut metagenome; faeces
1403
1328
-
Ala
TGC
[ENA]
¡û
>WENV180171005
OAVV01011648
[OAVV] human gut metagenome; faeces
830
755
-
Ala
TGC
[ENA]
¡û
>WENV180183434
OAWP01036710
[OAWP] human gut metagenome; faeces
85
10
-
Ala
TGC
[ENA]
¡û
>WENV180196936
OBAA01012381
[OBAA] human gut metagenome; faeces
290
365
+
Ala
TGC
[ENA]
¡û
>WENV180328207
OBKU01003171
[OBKU] human gut metagenome; human gut
2234
2159
-
Ala
TGC
[ENA]
¡û
>WENV180328557
OBKU01057247
[OBKU] human gut metagenome; human gut
4
79
+
Ala
TGC
[ENA]
¡û
>WENV180423709
OBVW01005090
[OBVW] human gut metagenome; faeces
2119
2044
-
Ala
TGC
[ENA]
¡û
>WENV180435154
OBWL01007448
[OBWL] human gut metagenome; faeces
1448
1373
-
Ala
TGC
[ENA]
¡û
>WENV180496610
OCAD01011249
[OCAD] human gut metagenome; faeces
288
363
+
Ala
TGC
[ENA]
¡û
>WENV180508108
OCAT01025863
[OCAT] human gut metagenome; faeces
398
323
-
Ala
TGC
[ENA]
¡û
>WENV180549243
OCIY01051293
[OCIY] human gut metagenome; human gut
178
103
-
Ala
TGC
[ENA]
¡û
>WENV180710819
ODFM01011342
[ODFM] human metagenome; G_DNA_Stool
1450
1375
-
Ala
TGC
[ENA]
¡û
>WENV180710882
ODFM01016658
[ODFM] human metagenome; G_DNA_Stool
120
195
+
Ala
TGC
[ENA]
¡û
>WENV180762369
ODHZ01113593
[ODHZ] human metagenome; G_DNA_Stool
403
328
-
Ala
TGC
[ENA]
¡û
>WENV180812618
ODJN01063399
[ODJN] human metagenome; G_DNA_Stool
407
332
-
Ala
TGC
[ENA]
¡û
>WENV180869289
ODLM01018788
[ODLM] human metagenome; G_DNA_Stool
231
306
+
Ala
TGC
[ENA]
¡û
>WENV180957512
ODUK01060995
[ODUK] human metagenome; G_DNA_Stool
120
195
+
Ala
TGC
[ENA]
¡û
>WENV181037571
ODXP01130158
[ODXP] human metagenome; G_DNA_Stool
60
135
+
Ala
TGC
[ENA]
¡û
>WENV181048814
ODYC01019621
[ODYC] human metagenome; G_DNA_Stool
115
190
+
Ala
TGC
[ENA]
¡û
>WENV181149407
OEHT01066946
[OEHT] human metagenome; G_DNA_Stool
120
195
+
Ala
TGC
[ENA]
¡û
>WENV181196206
OEQW01009525
[OEQW] metagenome; Caecal content
414
339
-
Ala
TGC
[ENA]
¡û
>WENV181203690
OERW01012595
[OERW] metagenome; Caecal content
568
493
-
Ala
TGC
[ENA]
¡û
>WENV181204772
OERZ01016331
[OERZ] metagenome; Caecal content
570
495
-
Ala
TGC
[ENA]
¡û
>WENV181343990
OFMJ01036246
[OFMJ] human gut metagenome; human gut
450
375
-
Ala
TGC
[ENA]
¡û
>WENV181364281
OFOU01050613
[OFOU] human gut metagenome; human gut
389
314
-
Ala
TGC
[ENA]
¡û
>WENV181472739
OGEZ01016919
[OGEZ] metagenome; Human gut stool
232
307
+
Ala
TGC
[ENA]
¡û
>WENV181526796
OGHJ01046717
[OGHJ] metagenome; Human gut stool
575
500
-
Ala
TGC
[ENA]
¡û
>WENV181575816
OGJU01030042
[OGJU] metagenome; Human gut stool
412
337
-
Ala
TGC
[ENA]
¡û
>WENV181637781
OGNB01042208
[OGNB] metagenome; Human gut stool
564
489
-
Ala
TGC
[ENA]
¡û
>WENV181659532
OGOE01023455
[OGOE] human gut metagenome; faeces
402
477
+
Ala
TGC
[ENA]
¡û
>WENV181765764
OGQY01047545
[OGQY] human gut metagenome; faeces
247
322
+
Ala
TGC
[ENA]
¡û
>WENV181825006
OGUK01032616
[OGUK] human gut metagenome; faeces
515
440
-
Ala
TGC
[ENA]
¡û
>WENV181887899
OGXL01047412
[OGXL] human gut metagenome; faeces
243
318
+
Ala
TGC
[ENA]
¡û
>WENV181895607
OGXR01016319
[OGXR] human gut metagenome; faeces
2180
2105
-
Ala
TGC
[ENA]
¡û
>WENV181916344
OGYF01107866
[OGYF] human gut metagenome; faeces
398
323
-
Ala
TGC
[ENA]
¡û
>WENV181926261
OGYM01064739
[OGYM] human gut metagenome; faeces
411
336
-
Ala
TGC
[ENA]
¡û
>WENV181929294
OGYO01017990
[OGYO] human gut metagenome; faeces
2216
2141
-
Ala
TGC
[ENA]
¡û
>WENV181978579
OHAE01028923
[OHAE] human gut metagenome; faeces
223
148
-
Ala
TGC
[ENA]
¡û
>WENV181989659
OHAO01024878
[OHAO] human gut metagenome; faeces
1225
1150
-
Ala
TGC
[ENA]
¡û
>WENV182002905
OHBA01040097
[OHBA] human gut metagenome; feces
115
190
+
Ala
TGC
[ENA]
¡û
>WENV182031442
OHCS01021396
[OHCS] human gut metagenome; feces
217
292
+
Ala
TGC
[ENA]
¡û
>WENV182102097
OHHU01015228
[OHHU] human gut metagenome; feces
1211
1136
-
Ala
TGC
[ENA]
¡û
>WENV182138645
OHKN01040323
[OHKN] human gut metagenome; feces
412
337
-
Ala
TGC
[ENA]
¡û
>WENV182180901
OHNO01025894
[OHNO] human gut metagenome; feces
639
564
-
Ala
TGC
[ENA]
¡û
>WENV182183772
OHNY01003090
[OHNY] human gut metagenome; feces
276
351
+
Ala
TGC
[ENA]
¡û
>WENV182192675
OHOZ01034440
[OHOZ] human gut metagenome; feces
125
200
+
Ala
TGC
[ENA]
¡û
>WENV182193907
OHPB01038650
[OHPB] human gut metagenome; feces
323
248
-
Ala
TGC
[ENA]
¡û
>WENV182208897
OHPY01007100
[OHPY] human gut metagenome; feces
1449
1374
-
Ala
TGC
[ENA]
¡û
>WENV182213012
OHQG01029352
[OHQG] human gut metagenome; feces
583
508
-
Ala
TGC
[ENA]
¡û
>WENV182216099
OHQM01019157
[OHQM] human gut metagenome; feces
291
366
+
Ala
TGC
[ENA]
¡û
>WENV182392566
OIEG01046140
[OIEG] human gut metagenome; human gut
418
343
-
Ala
TGC
[ENA]
¡û
>WENV182402193
OIES01001640
[OIES] human gut metagenome; human gut
6000
5925
-
Ala
TGC
[ENA]
¡û
>WENV182538426
OIXH01106336
[OIXH] human gut metagenome; faeces
402
327
-
Ala
TGC
[ENA]
¡û
>WENV182606264
OJJT01002663
[OJJT] metagenome; faeces
3061
3136
+
Ala
TGC
[ENA]
¡û
>WENV182622259
OJKJ01012938
[OJKJ] metagenome; faeces
678
753
+
Ala
TGC
[ENA]
¡û
>WENV182683117
OJNW01072339
[OJNW] human gut metagenome; human gut
318
243
-
Ala
TGC
[ENA]
¡û
>WENV182711340
OJPD01025519
[OJPD] human gut metagenome; stool sample
231
306
+
Ala
TGC
[ENA]
¡û
>WENV182753628
OJRC01054228
[OJRC] human gut metagenome; stool sample
411
336
-
Ala
TGC
[ENA]
¡û
>WENV182754341
OJRD01007323
[OJRD] human gut metagenome; stool sample
2214
2139
-
Ala
TGC
[ENA]
¡û
>WENV182794869
OJSP01065832
[OJSP] human gut metagenome; human gut
245
320
+
Ala
TGC
[ENA]
¡û
>WENV182869957
OKRT01061997
[OKRT] human gut metagenome; faeces
411
336
-
Ala
TGC
[ENA]
¡û
>WENV182883834
OKSB01045104
[OKSB] human gut metagenome; faeces
794
719
-
Ala
TGC
[ENA]
¡û
>WENV182888097
OKSD01058891
[OKSD] human gut metagenome; faeces
356
431
+
Ala
TGC
[ENA]
¡û
>WENV182952468
OKVW01001201
[OKVW] human gut metagenome; human gut
10356
10281
-
Ala
TGC
[ENA]
¡û
>WENV182957245
OKWG01002359
[OKWG] human gut metagenome; human gut
2480
2555
+
Ala
TGC
[ENA]
¡û
>WENV182960555
OKWJ01014073
[OKWJ] human gut metagenome; human gut
1214
1139
-
Ala
TGC
[ENA]
¡û
>WENV183032069
OLFX01051208
[OLFX] human gut metagenome; faeces
245
320
+
Ala
TGC
[ENA]
¡û
>WENV183040248
OLGB01083645
[OLGB] human gut metagenome; faeces
418
343
-
Ala
TGC
[ENA]
¡û
>WENV183043563
OLGD01095980
[OLGD] human gut metagenome; faeces
402
327
-
Ala
TGC
[ENA]
¡û
>WENV183073482
OLIT01069260
[OLIT] human gut metagenome; feces
573
498
-
Ala
TGC
[ENA]
¡û
>WENV183086814
OLJF01089457
[OLJF] metagenome; faeces
285
360
+
Ala
TGC
[ENA]
¡û
>WENV183265605
OLRS01033142
[OLRS] human gut metagenome; faeces
379
454
+
Ala
TGC
[ENA]
¡û
>WENV183281380
OLSB01087911
[OLSB] human gut metagenome; faeces
401
326
-
Ala
TGC
[ENA]
¡û
>WENV183762052
PPYE01272558
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
863
788
-
Ala
TGC
[ENA]
¡û
>WENV183779741
PPYF01149893
[PPYF] human gut metagenome; stool from patient with Crohn's disease
88
163
+
Ala
TGC
[ENA]
¡û
>WENV170030077
CDYH01018725
[CDYH] gut metagenome; human stools
116
191
+
Ala
TGC
[ENA]
¡û
>WENV170057358
CDZG01035323
[CDZG] gut metagenome; human stools
241
316
+
Ala
TGC
[ENA]
¡û
>WENV170062151
CDZJ01004006
[CDZJ] gut metagenome; human stools
744
819
+
Ala
TGC
[ENA]
¡û
>WENV170066860
CDZN01019726
[CDZN] gut metagenome; human stools
1084
1009
-
Ala
TGC
[ENA]
¡û
>WENV170067335
CDZO01008383
[CDZO] gut metagenome; human stools
293
368
+
Ala
TGC
[ENA]
¡û
>WENV170070943
CDZQ01041116
[CDZQ] gut metagenome; human stools
491
416
-
Ala
TGC
[ENA]
¡û
>WENV170074788
CDZT01008225
[CDZT] gut metagenome; human stools
592
667
+
Ala
TGC
[ENA]
¡û
>WENV170075975
CDZT01051716
[CDZT] gut metagenome; human stools
416
341
-
Ala
TGC
[ENA]
¡û
>WENV170077280
CDZU01027235
[CDZU] gut metagenome; human stools
400
325
-
Ala
TGC
[ENA]
¡û
>WENV170078266
CDZV01015962
[CDZV] gut metagenome; human stools
585
660
+
Ala
TGC
[ENA]
¡û
>WENV170079040
CDZV01048189
[CDZV] gut metagenome; human stools
634
709
+
Ala
TGC
[ENA]
¡û
>WENV170096171
CEAK01007072
[CEAK] gut metagenome; human stools
283
358
+
Ala
TGC
[ENA]
¡û
>WENV170638262
JFBN01454711
[JFBN] chicken gut metagenome; ceca of Broiler chicken
48
123
+
Ala
TGC
[ENA]
¡û
>C191008812
CP011524
Bacillota
Intestinimonas butyriciproducens SRB-521-5-I [CP011524]
667413
667488
+
Ala
TGC
-
¡û
>C191008834
CP011524
Bacillota
Intestinimonas butyriciproducens SRB-521-5-I [CP011524]
3139436
3139361
-
Ala
TGC
-
¡û
>W1810573000
QEKK01000025
Bacillota
Intestinimonas butyriciproducens DSM 26588 [QEKK]
3416
3341
-
Ala
TGC
[ENA]
¡û
>W2010250282
CABIYB020000041
Bacillota
Clostridium baratii [CABIYB]
86
161
+
Ala
TGC
[ENA]
¡û
>W2010273054
CABKUM020000005
Bacillota
Clostridiales bacterium [CABKUM]
3200
3125
-
Ala
TGC
[ENA]
¡û
>W2010273061
CABKUM020000006
Bacillota
Clostridiales bacterium [CABKUM]
3200
3125
-
Ala
TGC
[ENA]
¡û
>W2011957590
UZAR01000003
Bacillota
Intestinimonas timonensis GD4 [UZAR]
490124
490199
+
Ala
TGC
[ENA]
¡û
>W2011957629
UZAR01000008
Bacillota
Intestinimonas timonensis GD4 [UZAR]
1554636
1554561
-
Ala
TGC
[ENA]
¡û
>W2110177879
JABFHK010000049
Bacillota
Intestinimonas butyriciproducens GGCC_0179 [JABFHK]
3419
3344
-
Ala
TGC
[ENA]
¡û
>W2110246128
JACOPP010000059
Bacillota
Lawsonibacter sp. NSJ-51 [JACOPP]
276
351
+
Ala
TGC
[ENA]
¡û
>W2110259016
JACSOA010000122
Bacillota
Intestinimonas butyriciproducens An503 [JACSOA]
2243
2318
+
Ala
TGC
[ENA]
¡û
>W2110340291
JADMQW010000043
Bacillota
Intestinimonas butyriciproducens D40t1_170626_B2 [JADMQW]
3209
3134
-
Ala
TGC
[ENA]
¡û
>W2110340762
JADMRO010000040
Bacillota
Intestinimonas butyriciproducens D59t2_181005_A6 [JADMRO]
3264
3189
-
Ala
TGC
[ENA]
¡û
>W2110351707
JADNGR010000032
Bacillota
Intestinimonas butyriciproducens BSD2780061687b_171204_A3 [JADNGR]
3416
3341
-
Ala
TGC
[ENA]
¡û
>W2110368038
JADPFH010000115
Bacillota
Intestinimonas butyriciproducens J1101653_170612_D4 [JADPFH]
3416
3341
-
Ala
TGC
[ENA]
¡û
>W2110368378
JADPFT010000020
Bacillota
Intestinimonas butyriciproducens 1001302B_160321_E11 [JADPFT]
3264
3189
-
Ala
TGC
[ENA]
¡û
>W2110618504
JAHLNE010000022
Bacillota
Intestinimonas butyriciproducens O-10 [JAHLNE]
3416
3341
-
Ala
TGC
[ENA]
¡û
>C201308782
LR698981
Bacillota
Clostridiales bacterium [LR698981]
632960
633035
+
Ala
TGC
-
¡û
>C201308801
LR698981
Bacillota
Clostridiales bacterium [LR698981]
3290671
3290596
-
Ala
TGC
-
¡û
>W2110725336
JAJCHB010000043
Bacillota
Intestinimonas butyriciproducens SL.3.04 [JAJCHB]
2314
2389
+
Ala
TGC
[ENA]
¡û
>C231015749
AP025561
Bacillota
Oscillospiraceae bacterium CE91-St42 [AP025561]
3597073
3596998
-
Ala
TGC
-
¡û
>C231015761
AP025561
Bacillota
Oscillospiraceae bacterium CE91-St42 [AP025561]
3019799
3019724
-
Ala
TGC
-
¡û
>W2110739225
JAJEQY010000163
Bacillota
Intestinimonas sp. CLA-AA-H199 [JAJEQY]
1856
1931
+
Ala
TGC
[ENA]
¡û
>W1510669477
CWJP01000005
Bacillota
Intestinimonas massiliensis (ex Afouda et al. 2020) GD2 [CWJP]
3200
3125
-
Ala
TGC
[ENA]
¡û
>W1510669479
CWJP01000006
Bacillota
Intestinimonas massiliensis (ex Afouda et al. 2020) GD2 [CWJP]
3200
3125
-
Ala
TGC
[ENA]
¡û
>W1511303158
JPJD01000056
Bacillota
Intestinimonas butyriciproducens ER1 [JPJD]
3419
3344
-
Ala
TGC
[ENA]
¡û
>W1610103042
CZAT01000104
Bacillota
Flavonifractor plautii [CZAT]
1292
1217
-
Ala
TGC
[ENA]
¡û
>W1610103190
CZAV01000041
Bacillota
Clostridium baratii [CZAV]
86
161
+
Ala
TGC
[ENA]
¡û
>W1710105797
CZAT01000104
Bacillota
Flavonifractor plautii [CZAT]
1292
1217
-
Ala
TGC
[ENA]
¡û
>W1710105945
CZAV01000041
Bacillota
Clostridium baratii [CZAV]
86
161
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK