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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260874 (87 seq.)
>W1711069164
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
22131
22058
-
Thr
GGT
[ENA]
¡û
>W1711305204
MAKX01000002
Bacteroidota
Tenacibaculum soleae [MAKX]
312596
312523
-
Thr
GGT
[ENA]
¡û
>W131236237
AUMF01000019
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
75368
75295
-
Thr
GGT
[ENA]
¡û
>W1711700352
MSMP01000010
Bacteroidota
Tenacibaculum agarivorans HZ1 [MSMP]
165644
165719
+
Thr
GGT
[ENA]
¡û
>W1712097613
NIDK01000007
Bacteroidota
Polaribacter haliotis [NIDK]
26402
26329
-
Thr
GGT
[ENA]
¡û
>W1712097633
NIDL01000001
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
598691
598618
-
Thr
GGT
[ENA]
¡û
>C171074144
CP018155
Bacteroidota
Tenacibaculum todarodis LPB0136 [CP018155]
1368941
1368868
-
Thr
GGT
-
¡û
>C171094192
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
2421883
2421956
+
Thr
GGT
-
¡û
>w013078
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
1081727
1081650
-
Thr
GGT
[ENA]
¡û
>WENV180210093
OBAL01099300
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
4
77
+
Thr
GGT
[ENA]
¡û
>W141231613
BAUG01000011
Bacteroidota
Tenacibaculum maritimum NBRC 15946 [BAUG]
60123
60048
-
Thr
GGT
[ENA]
¡û
>WENV182593012
OJIS01008186
[OJIS] seawater metagenome; Sea water
1771
1698
-
Thr
GGT
[ENA]
¡û
>WENV183709107
PDWI01023919
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3397
3470
+
Thr
GGT
[ENA]
¡û
>WENV183712130
PDWI01089990
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1500
1427
-
Thr
GGT
[ENA]
¡û
>WENV183712308
PDWI01095038
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1486
1413
-
Thr
GGT
[ENA]
¡û
>WENV183719676
PDWJ01018392
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3041
2968
-
Thr
GGT
[ENA]
¡û
>WENV170018129
BARV01017376
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
85
10
-
Thr
GGT
[ENA]
¡û
>WENV170220122
CEPZ01088422
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
64
139
+
Thr
GGT
[ENA]
¡û
>WENV170304814
CESI01081552
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1448
1375
-
Thr
GGT
[ENA]
¡û
>WENV170596504
FUHQ01000143
[FUHQ] jellyfish metagenome; jellyfish
1175
1250
+
Thr
GGT
[ENA]
¡û
>WENV170634345
FYBJ01000268
[FYBJ] marine metagenome; marine
14280
14205
-
Thr
GGT
[ENA]
¡û
>C181219837
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
1001819
1001892
+
Thr
GGT
-
¡û
>C181220997
LT899436
Bacteroidota
Tenacibaculum jejuense type strain: KCTC 22618 [LT899436]
1331348
1331421
+
Thr
GGT
-
¡û
>C191018078
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
706993
707066
+
Thr
GGT
-
¡û
>W1910785801
MQVY01000003
Bacteroidota
Tenacibaculum sp. SG-28 [MQVY]
30096
30023
-
Thr
GGT
[ENA]
¡û
>W1910796590
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
1369151
1369078
-
Thr
GGT
[ENA]
¡û
>W1910796606
MSCM01000001
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
224115
224188
+
Thr
GGT
[ENA]
¡û
>W1910796656
MSCN01000001
Bacteroidota
Polaribacter porphyrae NBRC 108759 [MSCN]
1658299
1658226
-
Thr
GGT
[ENA]
¡û
>W1810156062
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1838069
1838142
+
Thr
GGT
[ENA]
¡û
>W1810586306
QFFG01000003
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
281832
281759
-
Thr
GGT
[ENA]
¡û
>W1810756016
QPEJ01000014
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
94256
94183
-
Thr
GGT
[ENA]
¡û
>W2010317720
CACSGE010000003
Bacteroidota
Tenacibaculum maritimum CVI1001048 [CACSGE]
45552
45625
+
Thr
GGT
[ENA]
¡û
>W2010317783
CACSGF010000023
Bacteroidota
Tenacibaculum maritimum Aq16-85 [CACSGF]
115033
115106
+
Thr
GGT
[ENA]
¡û
>W2010317811
CACSGG010000003
Bacteroidota
Tenacibaculum maritimum Aq16-88 [CACSGG]
69426
69353
-
Thr
GGT
[ENA]
¡û
>W2010317890
CACSGH010000096
Bacteroidota
Tenacibaculum maritimum NAC SLCC MFF [CACSGH]
40947
40874
-
Thr
GGT
[ENA]
¡û
>W2010317904
CACSGK010000057
Bacteroidota
Tenacibaculum maritimum DPIF 89/3001-6.2 [CACSGK]
46691
46764
+
Thr
GGT
[ENA]
¡û
>W2010317964
CACSGM010000023
Bacteroidota
Tenacibaculum maritimum UCD SB2 [CACSGM]
131348
131421
+
Thr
GGT
[ENA]
¡û
>W2010317989
CACSGN010000001
Bacteroidota
Tenacibaculum maritimum P1-39 [CACSGN]
50147
50220
+
Thr
GGT
[ENA]
¡û
>W2010318058
CACSGO010000066
Bacteroidota
Tenacibaculum maritimum P4-45 [CACSGO]
70397
70324
-
Thr
GGT
[ENA]
¡û
>W2010318091
CACSGP010000012
Bacteroidota
Tenacibaculum maritimum P2-48 [CACSGP]
59353
59426
+
Thr
GGT
[ENA]
¡û
>W2010318154
CACSGQ010000065
Bacteroidota
Tenacibaculum maritimum TFA4 [CACSGQ]
54450
54523
+
Thr
GGT
[ENA]
¡û
>W2010318187
CACSGR010000118
Bacteroidota
Tenacibaculum maritimum USC SE30.1 [CACSGR]
61659
61732
+
Thr
GGT
[ENA]
¡û
>W2010318249
CACSGS010000123
Bacteroidota
Tenacibaculum maritimum USC SP9.1 [CACSGS]
60570
60497
-
Thr
GGT
[ENA]
¡û
>W2010318295
CACSGT010000123
Bacteroidota
Tenacibaculum maritimum P2-27 [CACSGT]
60415
60342
-
Thr
GGT
[ENA]
¡û
>W2010318303
CACSGW010000002
Bacteroidota
Tenacibaculum maritimum FC [CACSGW]
60228
60155
-
Thr
GGT
[ENA]
¡û
>W2010318350
CACSGX010000002
Bacteroidota
Tenacibaculum maritimum JIP 32/91-4 [CACSGX]
60312
60239
-
Thr
GGT
[ENA]
¡û
>W2010318392
CACSGZ010000001
Bacteroidota
Tenacibaculum maritimum NCIMB 2158 [CACSGZ]
113214
113287
+
Thr
GGT
[ENA]
¡û
>W2010318471
CACSHA010000045
Bacteroidota
Tenacibaculum maritimum DPIF 89/0239-1 [CACSHA]
69135
69208
+
Thr
GGT
[ENA]
¡û
>W2010318513
CACSHB010000023
Bacteroidota
Tenacibaculum maritimum Aq16-89 [CACSHB]
69426
69353
-
Thr
GGT
[ENA]
¡û
>W2010318562
CACSHC010000050
Bacteroidota
Tenacibaculum maritimum 902 [CACSHC]
45522
45595
+
Thr
GGT
[ENA]
¡û
>W2010318613
CACSHD010000090
Bacteroidota
Tenacibaculum maritimum JIP 46/00 [CACSHD]
70341
70268
-
Thr
GGT
[ENA]
¡û
>W2010318636
CACSHF010000008
Bacteroidota
FS08(1) [CACSHF]
47198
47271
+
Thr
GGT
[ENA]
¡û
>W2010318709
CACSHG010000089
Bacteroidota
Tenacibaculum maritimum JIP 10/97 [CACSHG]
69370
69297
-
Thr
GGT
[ENA]
¡û
>W2010559807
JAASQL010000001
Bacteroidota
Wenyingzhuangia heitensis DSM 101599 [JAASQL]
1299238
1299311
+
Thr
GGT
[ENA]
¡û
>W2010567602
JAATJG010000005
Bacteroidota
Wenyingzhuangia aestuarii DSM 105044 [JAATJG]
106447
106374
-
Thr
GGT
[ENA]
¡û
>W2010688230
JACGLS010000003
Bacteroidota
Tenacibaculum sp. S7007 [JACGLS]
145828
145901
+
Thr
GGT
[ENA]
¡û
>W2010894328
MQVY01000003
Bacteroidota
Tenacibaculum sp. SG-28 [MQVY]
30096
30023
-
Thr
GGT
[ENA]
¡û
>W2010904225
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
1369151
1369078
-
Thr
GGT
[ENA]
¡û
>W2010904291
MSCN01000001
Bacteroidota
Polaribacter porphyrae NBRC 108759 [MSCN]
1658299
1658226
-
Thr
GGT
[ENA]
¡û
>W2011588654
SIHP01000001
Bacteroidota
Flavobacteriaceae bacterium Hp32 [SIHP]
631386
631313
-
Thr
GGT
[ENA]
¡û
>W2011615560
SJXJ01000007
Bacteroidota
Tenacibaculum sp. M341 [SJXJ]
186030
186103
+
Thr
GGT
[ENA]
¡û
>W2011623205
SLXM01000006
Bacteroidota
Tenacibaculum skagerrakense DSM 14836 [SLXM]
34990
35063
+
Thr
GGT
[ENA]
¡û
>W2011961844
VANR01000001
Bacteroidota
Polaribacter sp. DBTF-3 [VANR]
81061
80988
-
Thr
GGT
[ENA]
¡û
>W2012042724
VISM01000001
Bacteroidota
Lutibacter sp. Hel_I_33_5 [VISM]
1089433
1089360
-
Thr
GGT
[ENA]
¡û
>W2012097326
VNIA01000004
Bacteroidota
Tenacibaculum adriaticum DSM 18961 [VNIA]
236849
236922
+
Thr
GGT
[ENA]
¡û
>W2012107286
VORP01000005
Bacteroidota
Polaribacter glomeratus ACAM 171 [VORP]
201089
201162
+
Thr
GGT
[ENA]
¡û
>W2012221752
WAAU01000028
Bacteroidota
Tenacibaculum aiptasiae a4 [WAAU]
19459
19532
+
Thr
GGT
[ENA]
¡û
>W2110021480
BMEN01000004
Bacteroidota
Wenyingzhuangia marina CGMCC 1.12162 [BMEN]
347496
347423
-
Thr
GGT
[ENA]
¡û
>W2110612598
JAHKQL010000002
Bacteroidota
Polaribacter vadi B2M17 [JAHKQL]
258626
258553
-
Thr
GGT
[ENA]
¡û
>C211117967
CP058982
Bacteroidota
Tenacibaculum sp. AHE15PA [CP058982]
1811104
1811177
+
Thr
GGT
-
¡û
>C211118044
CP058983
Bacteroidota
Tenacibaculum sp. AHE14PA [CP058983]
997069
996996
-
Thr
GGT
-
¡û
>C231571170
CP115916
Bacteroidota
Tenacibaculum sp. 18-3228-7B [CP115916]
2185339
2185266
-
Thr
GGT
-
¡û
>C231571302
CP115918
Bacteroidota
Tenacibaculum ovolyticum 20-4135-2 [CP115918]
3301298
3301225
-
Thr
GGT
-
¡û
>W2110776898
VRMK01000026
Bacteroidota
Polaribacter porphyrae LMG 26671 [VRMK]
893285
893358
+
Thr
GGT
[ENA]
¡û
>W2110776921
VRML01000020
Bacteroidota
Polaribacter gangjinensis JCM 16152 [VRML]
331946
332019
+
Thr
GGT
[ENA]
¡û
>W2130024459
JADWOV010000268
Bacteroidota
Polaribacter sp. BAL334 [JADWOV]
108760
108833
+
Thr
GGT
[ENA]
¡û
>W2130044687
VRMM01000057
Bacteroidota
Polaribacter reichenbachii LMG 26443 [VRMM]
43512
43585
+
Thr
GGT
[ENA]
¡û
>WENV042177
AACY022216710
Marine microbial communities from Global Ocean Sampling (GOS)
562
639
+
Thr
GGT
[ENA]
>W11170346
AFPK01000027
Bacteroidota
Ochrovirga pacifica S85 [AFPK]
27256
27181
-
Thr
GGT
[ENA]
¡û
>C161068686
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
507762
507837
+
Thr
GGT
[Ensembl]
¡û
>W1610080945
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
77577
77504
-
Thr
GGT
[ENA]
¡û
>WENV074344
AACY023970415
Marine microbial communities from Global Ocean Sampling (GOS)
549
626
+
Thr
GGT
[ENA]
>W1610909692
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
22131
22058
-
Thr
GGT
[ENA]
¡û
>W1611054746
MAKX01000002
Bacteroidota
Tenacibaculum soleae [MAKX]
312596
312523
-
Thr
GGT
[ENA]
¡û
>W1710079596
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
77577
77504
-
Thr
GGT
[ENA]
¡û
>W1710534969
FNSF01000002
Bacteroidota
Tenacibaculum sp. MAR_2009_124 [FNSF]
320798
320871
+
Thr
GGT
[ENA]
¡û
>W1710587008
FQXQ01000004
Bacteroidota
Wenyingzhuangia marina [FQXQ]
80620
80695
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK