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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260877 (76 seq.)
>W1711171951
LWBP01000067
Bacteroidota
Niastella populi [LWBP]
68055
67982
-
Gly
CCC
[ENA]
¡û
>W1711501382
MKRO01000011
Bacteroidota
Sphingobacteriales bacterium 41-5 [MKRO]
6178
6251
+
Gly
CCC
[ENA]
¡û
>W1711715369
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
3483572
3483645
+
Gly
CCC
[ENA]
¡û
>WENV180025012
FTIL01019877
[FTIL] metagenome; soil
905
978
+
Gly
CCC
[ENA]
¡û
>WENV180025145
FTIL01187015
[FTIL] metagenome; soil
473
400
-
Gly
CCC
[ENA]
¡û
>WENV180041468
LLBZ010147407
[LLBZ] soil metagenome; soil from tomato rhizosphere
3
76
+
Gly
CCC
[ENA]
¡û
>WENV180291612
OBIV01101182
[OBIV] soil metagenome; Clay
80
153
+
Gly
CCC
[ENA]
¡û
>WENV180693127
OCZS011020811
[OCZS] soil metagenome; soil
177
104
-
Gly
CCC
[ENA]
¡û
>WENV181165263
OEIR01694402
[OEIR] soil metagenome; soil
133
58
-
Gly
CCC
[ENA]
¡û
>WENV181190206
OEOF01588118
[OEOF] activated sludge metagenome; Activated Sludge
75
148
+
Gly
CCC
[ENA]
¡û
>WENV181402012
OFTY01000031
[OFTY] sludge metagenome; sludge
140604
140677
+
Gly
CCC
[ENA]
¡û
>WENV170011838
APMI01095439
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1513
1440
-
Gly
CCC
[ENA]
¡û
>WENV170565931
FKKE01002372
[FKKE] freshwater metagenome; freshwater
7731
7658
-
Gly
CCC
[ENA]
¡û
>WENV170961572
MLJW01000172
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
25472
25545
+
Gly
CCC
[ENA]
¡û
>WENV170980761
MWVT01000500
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
6668
6741
+
Gly
CCC
[ENA]
¡û
>WENV170980796
MWVT01001365
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
4455
4380
-
Gly
CCC
[ENA]
¡û
>WENV170981221
MWVT01044570
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
641
568
-
Gly
CCC
[ENA]
¡û
>WENV170981553
MWVT01128518
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
33
108
+
Gly
CCC
[ENA]
¡û
>WENV170982424
MWVU01093819
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
341
416
+
Gly
CCC
[ENA]
¡û
>WENV170984167
MWVV01186844
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
172
245
+
Gly
CCC
[ENA]
¡û
>WENV170985058
MWVW01015426
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
830
757
-
Gly
CCC
[ENA]
¡û
>WENV170985935
MWVX01007637
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
638
711
+
Gly
CCC
[ENA]
¡û
>WENV170986907
MWVX01095373
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
307
234
-
Gly
CCC
[ENA]
¡û
>WENV170988415
MWVX01486146
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
278
351
+
Gly
CCC
[ENA]
¡û
>WENV170988416
MWVX01486247
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
32
107
+
Gly
CCC
[ENA]
¡û
>WENV170989989
MWVZ01173057
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
78
153
+
Gly
CCC
[ENA]
¡û
>WENV170992054
MWWB01000271
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
9144
9071
-
Gly
CCC
[ENA]
¡û
>WENV170992099
MWWB01001367
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
2476
2403
-
Gly
CCC
[ENA]
¡û
>WENV170992842
MWWB01108306
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
147
72
-
Gly
CCC
[ENA]
¡û
>WENV170992946
MWWB01135987
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
573
498
-
Gly
CCC
[ENA]
¡û
>WENV170993012
MWWB01155323
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
175
248
+
Gly
CCC
[ENA]
¡û
>WENV170994720
MWWE01036052
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
354
429
+
Gly
CCC
[ENA]
¡û
>WENV170995349
MWWF01001619
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1963
1890
-
Gly
CCC
[ENA]
¡û
>WENV170995551
MWWF01020386
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
686
613
-
Gly
CCC
[ENA]
¡û
>WENV170996809
MWWF01420000
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
193
120
-
Gly
CCC
[ENA]
¡û
>WENV170996877
MWWG01001309
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
1939
1864
-
Gly
CCC
[ENA]
¡û
>WENV170998334
MWWJ01005973
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
591
518
-
Gly
CCC
[ENA]
¡û
>WENV170999072
MWWJ01226151
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
116
41
-
Gly
CCC
[ENA]
¡û
>C181090251
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
990708
990635
-
Gly
CCC
-
¡û
>C191153681
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
2750724
2750651
-
Gly
CCC
-
¡û
>W1810393015
PYAW01000001
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
943324
943397
+
Gly
CCC
[ENA]
¡û
>W1810586446
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
3093551
3093478
-
Gly
CCC
[ENA]
¡û
>W1810694442
QLMA01000002
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
27388
27461
+
Gly
CCC
[ENA]
¡û
>W1810745590
QOWJ01000001
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
891376
891449
+
Gly
CCC
[ENA]
¡û
>C151016365
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
893606
893679
+
Gly
CCC
[Ensembl]
¡û
>W2010213360
CABHMS010000008
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
146971
147044
+
Gly
CCC
[ENA]
¡û
>W2010213418
CABHMT010000017
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
89909
89982
+
Gly
CCC
[ENA]
¡û
>W2010445825
JAABOK010000003
Bacteroidota
Chitinophaga sp. O9 [JAABOK]
328663
328736
+
Gly
CCC
[ENA]
¡û
>W2010585541
JABAIA010000001
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
2611086
2611013
-
Gly
CCC
[ENA]
¡û
>W2010586261
JABAOB010000001
Bacteroidota
Chitinophaga sp. Ak27 [JABAOB]
85571
85496
-
Gly
CCC
[ENA]
¡û
>W2010739301
JACJGO010000024
Bacteroidota
Flavisolibacter sp. BT320 [JACJGO]
44391
44318
-
Gly
CCC
[ENA]
¡û
>W2011368849
RBCI01000014
Bacteroidota
Flavisolibacter sp. X7X [RBCI]
112607
112680
+
Gly
CCC
[ENA]
¡û
>W2011429056
RIAR02000001
Bacteroidota
Chitinophaga sp. Mgbs1 [RIAR]
5584956
5584883
-
Gly
CCC
[ENA]
¡û
>W2011432232
RJJR01000006
Bacteroidota
Ferruginibacter sp. BO-59 [RJJR]
11198
11271
+
Gly
CCC
[ENA]
¡û
>W2011616174
SJZI01000043
Bacteroidota
Flaviaesturariibacter sp. 17J68-12 [SJZI]
41440
41365
-
Gly
CCC
[ENA]
¡û
>W2011617368
SKFH01000029
Bacteroidota
Flaviaesturariibacter sp. 17J68-15 [SKFH]
44564
44491
-
Gly
CCC
[ENA]
¡û
>W2011694129
STFF01000007
Bacteroidota
Niastella sp. HX-16-21 [STFF]
156273
156346
+
Gly
CCC
[ENA]
¡û
>W2012048659
VIWO01000009
Bacteroidota
Chitinophaga polysaccharea 1209 [VIWO]
182696
182771
+
Gly
CCC
[ENA]
¡û
>W2110269420
JACVFB010000002
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
985684
985757
+
Gly
CCC
[ENA]
¡û
>W2110269489
JACVFC010000001
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
3577836
3577763
-
Gly
CCC
[ENA]
¡û
>W2110395453
JADWYR010000003
Bacteroidota
Panacibacter sp. DH6 [JADWYR]
346089
346016
-
Gly
CCC
[ENA]
¡û
>W2110426514
JAELUL010000036
Bacteroidota
Chitinophaga sp. ASV3 [JAELUL]
28573
28646
+
Gly
CCC
[ENA]
¡û
>C211324999
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
5397816
5397889
+
Gly
CCC
-
¡û
>W1510019444
BBWV01000001
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
1956091
1956018
-
Gly
CCC
[ENA]
¡û
>C241065989
CP042433
Bacteroidota
Flavisolibacter ginsenosidimutans Gsoil 636 [CP042433]
4943391
4943318
-
Gly
CCC
-
¡û
>C241066060
CP042435
Bacteroidota
Panacibacter ginsenosidivorans Gsoil1550 [CP042435]
1626054
1626127
+
Gly
CCC
-
¡û
>C241149280
CP051204
Bacteroidota
Chitinophaga oryzae 1303 [CP051204]
376032
376105
+
Gly
CCC
-
¡û
>C241149354
CP051205
Bacteroidota
Chitinophaga oryzae 1310 [CP051205]
6737822
6737895
+
Gly
CCC
-
¡û
>W1511387756
JSVC01000004
Bacteroidota
Flavihumibacter solisilvae 3-3 [JSVC]
108053
107978
-
Gly
CCC
[ENA]
¡û
>C161090532
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
1608542
1608617
+
Gly
CCC
[Ensembl]
¡û
>W121017752
AGSA01000026
Bacteroidota
Niabella soli DSM 19437 [AGSA]
463865
463792
-
Gly
CCC
[ENA]
¡û
>W1610574607
JZQW01000074
Bacteroidota
Candidatus Parvibacillus calidus OLB8 [JZQW]
83901
83974
+
Gly
CCC
[ENA]
¡û
>W1710583131
FQUO01000004
Bacteroidota
Cnuella takakiae [FQUO]
219937
220010
+
Gly
CCC
[ENA]
¡û
>W1710583458
FQUU01000010
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
94032
93957
-
Gly
CCC
[ENA]
¡û
>W1710601092
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
1204121
1204046
-
Gly
CCC
[ENA]
¡û
>W1710691842
JZQW01000074
Bacteroidota
Candidatus Parvibacillus calidus OLB8 [JZQW]
83901
83974
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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