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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260955 (49 seq.)
>W131223192
AUBW01000028
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
16868
16793
-
Gln
TTG
[ENA]
¡û
>W131179044
ARMB01000055
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
113558
113633
+
Gln
TTG
[ENA]
¡û
>W131211924
ATNM01000143
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
74412
74485
+
Gln
TTG
[ENA]
¡û
>W1711707879
MSSV01000004
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
287279
287204
-
Gln
TTG
[ENA]
¡û
>W1711707933
MSSW01000061
Bacteroidota
Algoriphagus antarcticus [MSSW]
35826
35901
+
Gln
TTG
[ENA]
¡û
>W1711751668
MUNY01000039
Bacteroidota
Algoriphagus sp. A40 [MUNY]
51756
51831
+
Gln
TTG
[ENA]
¡û
>WENV181120728
OEFK01044035
[OEFK] marine metagenome; ENVO:00002010 seawater
154
81
-
Gln
TTG
[ENA]
¡û
>WENV181168116
OEIU01165321
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
262
335
+
Gln
TTG
[ENA]
¡û
>W141148147
AWXR01000006
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
13354
13279
-
Gln
TTG
[ENA]
¡û
>WENV170274450
CERM01018147
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1462
1387
-
Gln
TTG
[ENA]
¡û
>WENV170650295
JRYD01050724
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
839
764
-
Gln
TTG
[ENA]
¡û
>WENV170650438
JRYE01000378
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
17215
17290
+
Gln
TTG
[ENA]
¡û
>WENV170651602
JRYF01119469
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
231
304
+
Gln
TTG
[ENA]
¡û
>WENV170815318
MDSX01008084
[MDSX] marine metagenome; seawater
4525
4450
-
Gln
TTG
[ENA]
¡û
>WENV170878238
MDTC01072609
[MDTC] marine metagenome; seawater
3844
3769
-
Gln
TTG
[ENA]
¡û
>WENV170922478
MDTG01031703
[MDTG] marine metagenome; seawater
1349
1274
-
Gln
TTG
[ENA]
¡û
>WENV170991418
MWWA01192049
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
344
419
+
Gln
TTG
[ENA]
¡û
>WENV170994114
MWWD01014816
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
153
228
+
Gln
TTG
[ENA]
¡û
>W141699650
JMIH01000014
Bacteroidota
Anditalea andensis [JMIH]
108641
108716
+
Gln
TTG
[ENA]
¡û
>W1810606287
QGOL01000013
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
78866
78793
-
Gln
TTG
[ENA]
¡û
>W1810686020
QKZT01000002
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
801
874
+
Gln
TTG
[ENA]
¡û
>W1810686055
QKZU01000002
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
339098
339025
-
Gln
TTG
[ENA]
¡û
>W1810705059
QMIK01000004
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
716119
716046
-
Gln
TTG
[ENA]
¡û
>W1810885300
QUNF01000006
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
182415
182342
-
Gln
TTG
[ENA]
¡û
>C151089997
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
242931
243004
+
Gln
TTG
[Ensembl]
¡û
>W2010104664
BJYV01000017
Bacteroidota
Cyclobacterium qasimii NBRC 106168 [BJYV]
73875
73948
+
Gln
TTG
[ENA]
¡û
>W2010526649
JAANYN010000009
Bacteroidota
Cyclobacterium sp. GBPx2 [JAANYN]
91042
91115
+
Gln
TTG
[ENA]
¡û
>W2012107484
VORV01000005
Bacteroidota
Algoriphagus ratkowskyi IC026 [VORV]
286837
286764
-
Gln
TTG
[ENA]
¡û
>W2012107516
VORW01000004
Bacteroidota
Algoriphagus aquimarinus ACAM 450 [VORW]
194587
194514
-
Gln
TTG
[ENA]
¡û
>W2012136973
VTDH01000008
Bacteroidota
Cyclobacterium marinum Atlantic-IS [VTDH]
15951
15878
-
Gln
TTG
[ENA]
¡û
>W2012337702
WIOK01000002
Bacteroidota
Cyclobacterium xiamenense CGMCC 1.12432 [WIOK]
63176
63103
-
Gln
TTG
[ENA]
¡û
>W2012375558
WMCD01000010
Bacteroidota
Cyclobacterium jeungdonense KCTC 23150 [WMCD]
170317
170390
+
Gln
TTG
[ENA]
¡û
>W2012398641
WNKF01000002
Bacteroidota
Cyclobacterium sp. SYSU L10180 [WNKF]
365751
365824
+
Gln
TTG
[ENA]
¡û
>W2012398703
WNKG01000012
Bacteroidota
Cyclobacterium sp. SYSU L10167 [WNKG]
75199
75126
-
Gln
TTG
[ENA]
¡û
>W2012405936
WOFO01000004
Bacteroidota
Cyclobacterium sp. SYSU L10401 [WOFO]
467544
467617
+
Gln
TTG
[ENA]
¡û
>W2110022276
BMFD01000012
Bacteroidota
Belliella aquatica CGMCC 1.12479 [BMFD]
87790
87863
+
Gln
TTG
[ENA]
¡û
>C211155696
CP061947
Bacteroidota
Algoriphagus sp. Y33 [CP061947]
6150118
6150045
-
Gln
TTG
-
¡û
>C211198668
CP065018
Bacteroidota
Flavobacteriales bacterium [CP065018]
3009517
3009590
+
Gln
TTG
-
¡û
>C231565019
CP115160
Bacteroidota
Algoriphagus sp. TR-M9 [CP115160]
686738
686665
-
Gln
TTG
-
¡û
>C11105702
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
245979
246054
+
Gln
TTG
[Ensembl]
¡û
>C121010192
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
3383021
3383094
+
Gln
TTG
[Ensembl]
¡û
>W1610050111
BBFN01000011
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
73128
73203
+
Gln
TTG
[ENA]
¡û
>W1710046510
BBFN01000011
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
73128
73203
+
Gln
TTG
[ENA]
¡û
>W1710509403
FMXE01000013
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
86208
86133
-
Gln
TTG
[ENA]
¡û
>W1710532201
FNQC01000007
Bacteroidota
Rhodonellum ikkaensis [FNQC]
190316
190391
+
Gln
TTG
[ENA]
¡û
>W1710539777
FNVR01000009
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
102541
102616
+
Gln
TTG
[ENA]
¡û
>W1710542631
FNZH01000004
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
191642
191569
-
Gln
TTG
[ENA]
¡û
>W1710556707
FOKK01000010
Bacteroidota
Algoriphagus aquimarinus [FOKK]
187989
188064
+
Gln
TTG
[ENA]
¡û
>W1710593074
FRCY01000014
Bacteroidota
Cyclobacterium lianum [FRCY]
59843
59918
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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