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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261080 (43 seq.)
>W1710864499
LMFX01000034
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
29289
29214
-
Thr
TGT
[ENA]
¡û
>W1710866003
LMHD01000006
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
179803
179878
+
Thr
TGT
[ENA]
¡û
>WENV180016451
FSUX01001905
[FSUX] metagenome; soil
1345
1420
+
Thr
TGT
[ENA]
¡û
>WENV180020315
FTCZ01001448
[FTCZ] metagenome; soil
58907
58832
-
Thr
TGT
[ENA]
¡û
>WENV180031893
FTJU01000647
[FTJU] metagenome; soil
2842
2917
+
Thr
TGT
[ENA]
¡û
>WENV180032117
FTJU01179859
[FTJU] metagenome; soil
1128
1053
-
Thr
TGT
[ENA]
¡û
>WENV180692503
OCZS010578139
[OCZS] soil metagenome; soil
357
282
-
Thr
TGT
[ENA]
¡û
>WENV181163953
OEIQ01374445
[OEIQ] soil metagenome; soil
93
167
+
Thr
TGT
[ENA]
¡û
>WENV182543994
OJBD01008280
[OJBD] seawater metagenome; Sea water
200
275
+
Thr
TGT
[ENA]
¡û
>WENV183749217
PPFU01136113
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3704
3629
-
Thr
TGT
[ENA]
¡û
>WENV170711687
LNFM01006472
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4901
4976
+
Thr
TGT
[ENA]
¡û
>WENV170963860
MRWG01001031
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
19637
19562
-
Thr
TGT
[ENA]
¡û
>WENV170989062
MWVY01077032
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
285
360
+
Thr
TGT
[ENA]
¡û
>WENV170991825
MWWA01336829
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
202
277
+
Thr
TGT
[ENA]
¡û
>WENV170993945
MWWC01051919
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
145
220
+
Thr
TGT
[ENA]
¡û
>WENV170998097
MWWI01013605
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
385
310
-
Thr
TGT
[ENA]
¡û
>W141779857
JOOE01000002
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
435873
435948
+
Thr
TGT
[ENA]
¡û
>W1910743277
MHXO01000222
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
10986
11061
+
Thr
TGT
[ENA]
¡û
>SRA1003805
SRR002327.192926
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
219
144
-
Thr
TGT
[SRA]
>SRA1003865
SRR002327.245180
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
34
109
+
Thr
TGT
[SRA]
>W1810579402
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1881884
1881809
-
Thr
TGT
[ENA]
¡û
>W1810594071
QFYQ01000001
Alphaproteobacteria
Phenylobacterium soli LX32 [QFYQ]
2257934
2257859
-
Thr
TGT
[ENA]
¡û
>W1810679196
QKPN01000005
Alphaproteobacteria
Rhodobacteraceae bacterium DSL-40 [QKPN]
121160
121235
+
Thr
TGT
[ENA]
¡û
>C151034777
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
749275
749200
-
Thr
TGT
[Ensembl]
¡û
>W2010718076
JACHYN010000002
Alphaproteobacteria
Azospirillum sp. OGB3 [JACHYN]
437126
437051
-
Thr
TGT
[ENA]
¡û
>W2010731640
JACIJF010000004
Alphaproteobacteria
Sphingomonas xinjiangensis DSM 26736 [JACIJF]
72783
72858
+
Thr
TGT
[ENA]
¡û
>W2010876709
MHXO01000222
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
10986
11061
+
Thr
TGT
[ENA]
¡û
>W2012353996
WJSQ01000018
Alphaproteobacteria
Sphingomonas sp. YJ09 [WJSQ]
25575
25500
-
Thr
TGT
[ENA]
¡û
>W2110201023
JACCJY010000005
Alphaproteobacteria
Azospirillum sp. W712 [JACCJY]
33762
33687
-
Thr
TGT
[ENA]
¡û
>W2110562782
JAGMWN010000004
Alphaproteobacteria
Marivibrio halodurans CGMCC 1.15697 [JAGMWN]
2665
2740
+
Thr
TGT
[ENA]
¡û
>C211134440
CP060495
Alphaproteobacteria
Novosphingopyxis sp. PB63 pb63 [CP060495]
1340945
1341020
+
Thr
TGT
-
¡û
>C211136837
CP060697
Alphaproteobacteria
Sphingomonas sp. sand1-3 [CP060697]
1314317
1314392
+
Thr
TGT
-
¡û
>C211137714
CP060718
Alphaproteobacteria
Sphingomonas lutea KCTC 23642 [CP060718]
2167571
2167646
+
Thr
TGT
-
¡û
>C211138724
CP060780
Alphaproteobacteria
Sphingomonas daechungensis KACC 18115 [CP060780]
2677118
2677193
+
Thr
TGT
-
¡û
>C211138788
CP060782
Alphaproteobacteria
Sphingomonas sediminicola KACC 15039 [CP060782]
404358
404283
-
Thr
TGT
-
¡û
>C231287108
CP090953
Alphaproteobacteria
Sphingomonas sp. S2-65 [CP090953]
27446
27371
-
Thr
TGT
-
¡û
>C231381030
CP097253
Alphaproteobacteria
Sphingomonas glaciei S8-45 [CP097253]
1177010
1177085
+
Thr
TGT
-
¡û
>C241131733
CP048815
Alphaproteobacteria
Caulobacter rhizosphaerae KCTC 52515 [CP048815]
2182479
2182404
-
Thr
TGT
-
¡û
>W2310010483
BMLD01000005
Alphaproteobacteria
Caulobacter rhizosphaerae CGMCC 1.15915 [BMLD]
312275
312350
+
Thr
TGT
[ENA]
¡û
>WENV045857
AACY022552786
Marine microbial communities from Global Ocean Sampling (GOS)
129
54
-
Thr
TGT
[ENA]
>W1610726845
LMFX01000034
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
29289
29214
-
Thr
TGT
[ENA]
¡û
>W1610728349
LMHD01000006
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
179803
179878
+
Thr
TGT
[ENA]
¡û
>W1710626724
JPIR01000111
Alphaproteobacteria
Azospirillum brasilense [JPIR]
1462
1537
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK