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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261089 (57 seq.)
>W1711090677
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6851
6926
+
Trp
CCA
[ENA]
¡û
>W1711090748
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30504
30429
-
Trp
CCA
[ENA]
¡û
>C013010
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4855872
4855797
-
Trp
CCA
[Ensembl]
¡û
>WENV180042128
LNFX01000161
[LNFX] marine sediment metagenome; antarctic beach sand mud
11434
11509
+
Trp
CCA
[ENA]
¡û
>WENV180109086
OAPJ01005162
[OAPJ] marine metagenome; ENVO 00002150
122
197
+
Trp
CCA
[ENA]
¡û
>W141191402
AYOZ01000010
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
57193
57118
-
Trp
CCA
[ENA]
¡û
>W141284697
JAMB01000012
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
23858
23933
+
Trp
CCA
[ENA]
¡û
>W09106481
AAVH01000032
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
2530
2605
+
Trp
CCA
[ENA]
¡û
>C191039809
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3751070
3750995
-
Trp
CCA
-
¡û
>WENV002206
AACY020061575
Marine microbial communities from Global Ocean Sampling (GOS)
1320
1243
-
Trp
CCA
[ENA]
>W1910584848
JYBL01000026
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
20861
20936
+
Trp
CCA
[ENA]
¡û
>W1910914902
NHTT01000018
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
57346
57271
-
Trp
CCA
[ENA]
¡û
>WENV026326
AACY020957775
Marine microbial communities from Global Ocean Sampling (GOS)
181
258
+
Trp
CCA
[ENA]
>W1810606253
QGOK01000024
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
19271
19346
+
Trp
CCA
[ENA]
¡û
>W1810625274
QHJF01000032
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
13454
13529
+
Trp
CCA
[ENA]
¡û
>W1810676286
QKLW01000013
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
11665
11740
+
Trp
CCA
[ENA]
¡û
>W1810679681
QKRA01000012
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
60138
60063
-
Trp
CCA
[ENA]
¡û
>W1810720362
QNRF01000011
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
62741
62666
-
Trp
CCA
[ENA]
¡û
>W1810721723
QNSE01000017
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
11797
11872
+
Trp
CCA
[ENA]
¡û
>W1810759725
QPJQ01000025
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
57151
57076
-
Trp
CCA
[ENA]
¡û
>W1810885382
QUNG01000016
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
8208
8283
+
Trp
CCA
[ENA]
¡û
>W2010584400
JABAEK010000017
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
10036
10111
+
Trp
CCA
[ENA]
¡û
>W2010764351
JYBL01000026
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
20861
20936
+
Trp
CCA
[ENA]
¡û
>W2010967762
NHTT01000018
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
57346
57271
-
Trp
CCA
[ENA]
¡û
>W2011222068
PTXN01000011
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
117640
117565
-
Trp
CCA
[ENA]
¡û
>W2011431078
RIZG01000012
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
8559
8634
+
Trp
CCA
[ENA]
¡û
>W2011431139
RIZH01000017
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
58086
58011
-
Trp
CCA
[ENA]
¡û
>W2011611899
SJSB01000016
Gammaproteobacteria
Marinomonas sp. JHZ-47 [SJSB]
7983
8058
+
Trp
CCA
[ENA]
¡û
>W2011611992
SJSC01000010
Gammaproteobacteria
Marinomonas sp. KMM3893 [SJSC]
59417
59342
-
Trp
CCA
[ENA]
¡û
>W2012023275
VFRR01000021
Gammaproteobacteria
Marinomonas sp. HB171799 [VFRR]
56836
56761
-
Trp
CCA
[ENA]
¡û
>W2012132111
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
3292533
3292458
-
Trp
CCA
[ENA]
¡û
>W2110030238
BMLJ01000018
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
58879
58804
-
Trp
CCA
[ENA]
¡û
>W2110286894
JACYFC010000008
Gammaproteobacteria
Marinomonas colpomeniae SM2066 [JACYFC]
15565
15640
+
Trp
CCA
[ENA]
¡û
>W2110429660
JAEMUI010000024
Gammaproteobacteria
Marinomonas spartinae USM8 [JAEMUI]
10431
10506
+
Trp
CCA
[ENA]
¡û
>W2110571036
JAGSSV010000012
Gammaproteobacteria
Marinomonas vulgaris A79 [JAGSSV]
36566
36491
-
Trp
CCA
[ENA]
¡û
>W2110617711
JAHLLW010000021
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
54962
54887
-
Trp
CCA
[ENA]
¡û
>C211142007
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
4329292
4329217
-
Trp
CCA
-
¡û
>C211273594
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
1795965
1795890
-
Trp
CCA
-
¡û
>W2110716893
JAJATW010000012
Gammaproteobacteria
Marinomonas sp. E8 [JAJATW]
57717
57642
-
Trp
CCA
[ENA]
¡û
>C231129746
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
1513334
1513259
-
Trp
CCA
-
¡û
>C231130915
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
4158394
4158319
-
Trp
CCA
-
¡û
>C241010763
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
3323047
3322972
-
Trp
CCA
-
¡û
>C241166575
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
3865020
3864945
-
Trp
CCA
-
¡û
>C11115033
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
3700259
3700184
-
Trp
CCA
[Ensembl]
¡û
>WENV046259
AACY022584693
Marine microbial communities from Global Ocean Sampling (GOS)
773
848
+
Trp
CCA
[ENA]
>WENV046973
AACY022631931
Marine microbial communities from Global Ocean Sampling (GOS)
695
618
-
Trp
CCA
[ENA]
>W1610503742
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71193
71118
-
Trp
CCA
[ENA]
¡û
>W1610504006
FLOE01000007
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
10752
10827
+
Trp
CCA
[ENA]
¡û
>W1610506649
FLRA01000019
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
6674
6749
+
Trp
CCA
[ENA]
¡û
>W1610506716
FLRB01000003
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
6674
6749
+
Trp
CCA
[ENA]
¡û
>W1610540072
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60115
60040
-
Trp
CCA
[ENA]
¡û
>W1610924917
LTAW01000012
Gammaproteobacteria
Marinomonas atlantica [LTAW]
6851
6926
+
Trp
CCA
[ENA]
¡û
>W1610924988
LTAX01000028
Gammaproteobacteria
Marinomonas gallaica [LTAX]
30504
30429
-
Trp
CCA
[ENA]
¡û
>WENV078241
AAFZ01013896
Fossil microbial community from Whale Fall (Santa Cruz Basin)
266
343
+
Trp
CCA
[ENA]
>W1710496571
FLOB01000016
Gammaproteobacteria
Marinomonas spartinae [FLOB]
71193
71118
-
Trp
CCA
[ENA]
¡û
>W1710583995
FQVF01000025
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
57468
57393
-
Trp
CCA
[ENA]
¡û
>W1710643093
JSEE01000019
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
60115
60040
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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