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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261162 (39 seq.)
>W1711510632
MLBG01000052
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
16520
16595
+
Asn
GTT
[ENA]
¡û
>W1711581248
MNTW01000001
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
81950
81875
-
Asn
GTT
[ENA]
¡û
>W1711723501
MTPJ01000017
Thermodesulfobacteriota
Lawsonia intracellularis [MTPJ]
161753
161828
+
Asn
GTT
[ENA]
¡û
>C011818
AM180252
Thermodesulfobacteriota
Lawsonia intracellularis PHE/MN1-00 [AM180252]
1267851
1267926
+
Asn
GTT
[Ensembl]
¡û
>WENV180962577
ODUN01016546
[ODUN] human metagenome; G_DNA_Stool
2119
2044
-
Asn
GTT
[ENA]
¡û
>WENV181024538
ODWX01105588
[ODWX] human metagenome; G_DNA_Stool
224
149
-
Asn
GTT
[ENA]
¡û
>WENV181515859
OGGW01042869
[OGGW] metagenome; Human gut stool
37
112
+
Asn
GTT
[ENA]
¡û
>W141201107
AZAO01000009
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
91746
91671
-
Asn
GTT
[ENA]
¡û
>WENV182696614
OJOK01033462
[OJOK] human gut metagenome; human gut
817
742
-
Asn
GTT
[ENA]
¡û
>W141279144
JAGC01000003
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
1879297
1879222
-
Asn
GTT
[ENA]
¡û
>C181081048
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2297728
2297803
+
Asn
GTT
-
¡û
>W1910182300
BJMT01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
84057
83982
-
Asn
GTT
[ENA]
¡û
>W1910182301
BJMT01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
65488
65413
-
Asn
GTT
[ENA]
¡û
>W1810707514
QNHM01000001
Thermodesulfobacteriota
Lawsonia intracellularis Ib2/JPN [QNHM]
135999
135924
-
Asn
GTT
[ENA]
¡û
>W1810707545
QNHN01000001
Thermodesulfobacteriota
Lawsonia intracellularis Ni/JPN [QNHN]
591314
591389
+
Asn
GTT
[ENA]
¡û
>W1810707598
QNHO01000001
Thermodesulfobacteriota
Lawsonia intracellularis Fu/JPN [QNHO]
135989
135914
-
Asn
GTT
[ENA]
¡û
>W2010492278
JAAKEH010000040
Thermodesulfobacteriota
Desulfovibrio sp. ZJ200 [JAAKEH]
26323
26398
+
Asn
GTT
[ENA]
¡û
>W2011219204
PRDD01000004
Thermodesulfobacteriota
Lawsonia intracellularis LR189 [PRDD]
255935
256010
+
Asn
GTT
[ENA]
¡û
>W2012468822
WVUD01000033
Thermodesulfobacteriota
Desulfovibrio aerotolerans DSM 16695 [WVUD]
32616
32541
-
Asn
GTT
[ENA]
¡û
>W2110225274
JACJLY010000037
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
5708
5783
+
Asn
GTT
[ENA]
¡û
>W2110225275
JACJLY010000037
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
5857
5932
+
Asn
GTT
[ENA]
¡û
>W2110690984
JAIOTY010000001
Thermodesulfobacteriota
Cupidesulfovibrio sp. SRB-5 [JAIOTY]
960700
960625
-
Asn
GTT
[ENA]
¡û
>W2110690985
JAIOTY010000001
Thermodesulfobacteriota
Cupidesulfovibrio sp. SRB-5 [JAIOTY]
953324
953249
-
Asn
GTT
[ENA]
¡û
>W2110691850
JAIPUV010000002
Thermodesulfobacteriota
Lawsonia intracellularis CBNU010 [JAIPUV]
442996
443071
+
Asn
GTT
[ENA]
¡û
>W2110726522
JAJCIJ010000022
Thermodesulfobacteriota
Desulfovibrio desulfuricans DFI.2.30 [JAJCIJ]
37302
37227
-
Asn
GTT
[ENA]
¡û
>W2110730677
JAJCNP010000024
Thermodesulfobacteriota
Desulfovibrio desulfuricans DFI.2.73 [JAJCNP]
37302
37227
-
Asn
GTT
[ENA]
¡û
>C231105544
CP065938
Thermodesulfobacteriota
Desulfovibrionaceae bacterium LT0009 [CP065938]
97888
97963
+
Asn
GTT
-
¡û
>C231105545
CP065938
Thermodesulfobacteriota
Desulfovibrionaceae bacterium LT0009 [CP065938]
133416
133491
+
Asn
GTT
-
¡û
>C231508378
CP107054
Thermodesulfobacteriota
Lawsonia intracellularis PPE-GX01-2022 [CP107054]
1249361
1249436
+
Asn
GTT
-
¡û
>C241311595
CP133659
Thermodesulfobacteriota
Nitratidesulfovibrio liaohensis KPS [CP133659]
4035441
4035366
-
Asn
GTT
-
¡û
>C241311596
CP133659
Thermodesulfobacteriota
Nitratidesulfovibrio liaohensis KPS [CP133659]
4028379
4028304
-
Asn
GTT
-
¡û
>C241390239
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
2875321
2875396
+
Asn
GTT
-
¡û
>C241390240
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
2875470
2875545
+
Asn
GTT
-
¡û
>C11107445
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2478471
2478546
+
Asn
GTT
[Ensembl]
¡û
>C11107446
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2497024
2497099
+
Asn
GTT
[Ensembl]
¡û
>W1511365622
JSEH01000003
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
119278
119203
-
Asn
GTT
[ENA]
¡û
>C131011813
CP004029
Thermodesulfobacteriota
Lawsonia intracellularis N343 [CP004029]
1267800
1267875
+
Asn
GTT
[Ensembl]
¡û
>WENV081964
BAAU01006489
Gut microbiome of Human (healthy human sample F1-S, Adult, Male)
1146
1069
-
Asn
GTT
[ENA]
>W1710515619
FNBX01000017
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
37443
37518
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK