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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261190 (33 seq.)
>C013060
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
1183688
1183613
-
Arg
CCT
[Ensembl]
¡û
>WENV180042138
LNFX01000440
[LNFX] marine sediment metagenome; antarctic beach sand mud
3119
3044
-
Arg
CCT
[ENA]
¡û
>W141191378
AYOZ01000004
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
16870
16945
+
Arg
CCT
[ENA]
¡û
>C191039847
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
858607
858532
-
Arg
CCT
-
¡û
>W09106434
AAVH01000001
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1178260
1178185
-
Arg
CCT
[ENA]
¡û
>W1910584835
JYBL01000010
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
183566
183491
-
Arg
CCT
[ENA]
¡û
>W1910914883
NHTT01000011
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
6836
6911
+
Arg
CCT
[ENA]
¡û
>W1810676267
QKLW01000004
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
95098
95023
-
Arg
CCT
[ENA]
¡û
>W1810720326
QNRF01000002
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
273158
273083
-
Arg
CCT
[ENA]
¡û
>W1810721691
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
6887
6962
+
Arg
CCT
[ENA]
¡û
>W1810759684
QPJQ01000005
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
67435
67360
-
Arg
CCT
[ENA]
¡û
>W2010584374
JABAEK010000006
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
17028
17103
+
Arg
CCT
[ENA]
¡û
>W2010764338
JYBL01000010
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
183566
183491
-
Arg
CCT
[ENA]
¡û
>W2010967743
NHTT01000011
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
6836
6911
+
Arg
CCT
[ENA]
¡û
>W2011222077
PTXN01000016
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
92703
92628
-
Arg
CCT
[ENA]
¡û
>W2011431125
RIZH01000009
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
213998
213923
-
Arg
CCT
[ENA]
¡û
>W2011648801
SNXC01000011
Gammaproteobacteria
Marinomonas balearica CECT 7378 [SNXC]
351791
351716
-
Arg
CCT
[ENA]
¡û
>W2110617704
JAHLLW010000010
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
6827
6902
+
Arg
CCT
[ENA]
¡û
>C211141996
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
3399060
3399135
+
Arg
CCT
-
¡û
>C211155485
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
3458352
3458427
+
Arg
CCT
-
¡û
>C211273589
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
2936643
2936568
-
Arg
CCT
-
¡û
>C231056872
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
1153132
1153057
-
Arg
CCT
-
¡û
>C231056958
CP047695
Gammaproteobacteria
Marinomonas mediterranea MMB-2 (IVIA-Po-186) [CP047695]
1113865
1113790
-
Arg
CCT
-
¡û
>C231057044
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
1158192
1158117
-
Arg
CCT
-
¡û
>C231129736
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
2482487
2482412
-
Arg
CCT
-
¡û
>C231130908
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
3453111
3453186
+
Arg
CCT
-
¡û
>C241010757
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
2712472
2712547
+
Arg
CCT
-
¡û
>C241166608
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
787489
787414
-
Arg
CCT
-
¡û
>C11114703
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
1158190
1158115
-
Arg
CCT
[Ensembl]
¡û
>C11115028
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
3110662
3110737
+
Arg
CCT
[Ensembl]
¡û
>W1610540046
JSEE01000010
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
115986
116061
+
Arg
CCT
[ENA]
¡û
>W1710583967
FQVF01000012
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
155533
155458
-
Arg
CCT
[ENA]
¡û
>W1710643067
JSEE01000010
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
115986
116061
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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