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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261229 (67 seq.)
>W1711750473
MUMZ01000065
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
103850
103775
-
Asn
GTT
[ENA]
¡û
>W1711750475
MUMZ01000065
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
103599
103524
-
Asn
GTT
[ENA]
¡û
>W141152712
AXCA01000027
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
466
391
-
Asn
GTT
[ENA]
¡û
>W141152714
AXCA01000027
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
249
174
-
Asn
GTT
[ENA]
¡û
>W141212673
AZQX01000094
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
25505
25580
+
Asn
GTT
[ENA]
¡û
>WENV170680038
LFCJ01002899
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7934
8009
+
Asn
GTT
[ENA]
¡û
>WENV170680040
LFCJ01002899
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8139
8214
+
Asn
GTT
[ENA]
¡û
>WENV170680370
LFCJ01009701
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3856
3781
-
Asn
GTT
[ENA]
¡û
>WENV170683409
LFIK01011106
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6871
6796
-
Asn
GTT
[ENA]
¡û
>WENV170703777
LKMJ01016571
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3712
3637
-
Asn
GTT
[ENA]
¡û
>WENV170703779
LKMJ01016571
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3478
3403
-
Asn
GTT
[ENA]
¡û
>WENV170965640
MTEU01005187
[MTEU] soil metagenome; naturally attenuated soil
19536
19611
+
Asn
GTT
[ENA]
¡û
>WENV170965641
MTEU01005187
[MTEU] soil metagenome; naturally attenuated soil
19717
19792
+
Asn
GTT
[ENA]
¡û
>WENV170965740
MTEV01001652
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
10998
10923
-
Asn
GTT
[ENA]
¡û
>WENV170965748
MTEV01001903
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
131
56
-
Asn
GTT
[ENA]
¡û
>WENV170966081
MTEX01001303
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
159353
159428
+
Asn
GTT
[ENA]
¡û
>W141557608
JHVH01000006
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
46423
46498
+
Asn
GTT
[ENA]
¡û
>W141557610
JHVH01000006
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
46637
46712
+
Asn
GTT
[ENA]
¡û
>W1810177411
PJRN01000001
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
113464
113539
+
Asn
GTT
[ENA]
¡û
>W1810177413
PJRN01000001
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
113733
113808
+
Asn
GTT
[ENA]
¡û
>W1810608670
QGTM01000028
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
4116
4041
-
Asn
GTT
[ENA]
¡û
>W1810608672
QGTM01000028
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
3913
3838
-
Asn
GTT
[ENA]
¡û
>W1810624160
QHGY01000008
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
27807
27732
-
Asn
GTT
[ENA]
¡û
>W1810624163
QHGY01000008
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
27433
27358
-
Asn
GTT
[ENA]
¡û
>W1810758221
QPII01000002
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
454709
454634
-
Asn
GTT
[ENA]
¡û
>W1810760657
QPKI01000006
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
35225
35150
-
Asn
GTT
[ENA]
¡û
>W2010449882
JAACZO010000003
Gammaproteobacteria
Halomonas sp. JSM 104105 [JAACZO]
40727
40802
+
Asn
GTT
[ENA]
¡û
>W2010537939
JAAQTN010000020
Gammaproteobacteria
Halomonas desiderata FB2 [JAAQTN]
74816
74891
+
Asn
GTT
[ENA]
¡û
>W2010537941
JAAQTN010000020
Gammaproteobacteria
Halomonas desiderata FB2 [JAAQTN]
75092
75167
+
Asn
GTT
[ENA]
¡û
>W2010537985
JAAQTO010000008
Gammaproteobacteria
Halomonas sp. DX6 [JAAQTO]
45025
44950
-
Asn
GTT
[ENA]
¡û
>W2010537987
JAAQTO010000008
Gammaproteobacteria
Halomonas sp. DX6 [JAAQTO]
44756
44681
-
Asn
GTT
[ENA]
¡û
>W2010681343
JACEFT010000006
Gammaproteobacteria
Halomonas kenyensis DSM 17331 [JACEFT]
187022
186947
-
Asn
GTT
[ENA]
¡û
>W2010681345
JACEFT010000006
Gammaproteobacteria
Halomonas kenyensis DSM 17331 [JACEFT]
186766
186691
-
Asn
GTT
[ENA]
¡û
>W2011532866
SBLD01000002
Gammaproteobacteria
Halomonas sp. TBZ202 [SBLD]
186515
186590
+
Asn
GTT
[ENA]
¡û
>W2011617431
SLTR01000002
Gammaproteobacteria
Halomonas sp. 204 [SLTR]
176379
176454
+
Asn
GTT
[ENA]
¡û
>W2012141862
VTPY01000001
Gammaproteobacteria
Halomonas sp. L5 [VTPY]
105932
106007
+
Asn
GTT
[ENA]
¡û
>W2012326951
WHMA01000018
Gammaproteobacteria
Halomonas sp. NO4 [WHMA]
16189
16113
-
Asn
GTT
[ENA]
¡û
>W2012446478
WUTS01000001
Gammaproteobacteria
Halomonas sp. D1-1 [WUTS]
145760
145835
+
Asn
GTT
[ENA]
¡û
>W2012446553
WUTT01000001
Gammaproteobacteria
Halomonas alimentaria DSM 15356 [WUTT]
2871309
2871384
+
Asn
GTT
[ENA]
¡û
>W2110358952
JADNRL010000003
Gammaproteobacteria
Halomonas sp. KAO [JADNRL]
49527
49452
-
Asn
GTT
[ENA]
¡û
>W2110659465
JAHXBV010000002
Gammaproteobacteria
Halomonas sp. ANAO-440 [JAHXBV]
131573
131648
+
Asn
GTT
[ENA]
¡û
>W2110663849
JAHYCA010000003
Gammaproteobacteria
Halomonas sp. Y3S6 [JAHYCA]
614031
613956
-
Asn
GTT
[ENA]
¡û
>W2110663851
JAHYCA010000003
Gammaproteobacteria
Halomonas sp. Y3S6 [JAHYCA]
613805
613730
-
Asn
GTT
[ENA]
¡û
>C201059471
CP035042
Gammaproteobacteria
Halomonas sp. BC-M4-5 [CP035042]
3278350
3278275
-
Asn
GTT
-
¡û
>C201059473
CP035042
Gammaproteobacteria
Halomonas sp. BC-M4-5 [CP035042]
3278068
3277993
-
Asn
GTT
-
¡û
>C211093653
CP053381
Gammaproteobacteria
Halomonas sp. MCCC 1A11059 [CP053381]
2934064
2933989
-
Asn
GTT
-
¡û
>C211093655
CP053381
Gammaproteobacteria
Halomonas sp. MCCC 1A11059 [CP053381]
2933845
2933770
-
Asn
GTT
-
¡û
>C211093718
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
2964367
2964292
-
Asn
GTT
-
¡û
>C211093720
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
2964087
2964012
-
Asn
GTT
-
¡û
>C211093779
CP053383
Gammaproteobacteria
Halomonas sp. MCCC 1A13718 [CP053383]
3053908
3053833
-
Asn
GTT
-
¡û
>C211093781
CP053383
Gammaproteobacteria
Halomonas sp. MCCC 1A13718 [CP053383]
3053682
3053607
-
Asn
GTT
-
¡û
>C211206907
CP065435
Gammaproteobacteria
Halomonas campisalis SS10-MC5 [CP065435]
2973863
2973788
-
Asn
GTT
-
¡û
>C211206909
CP065435
Gammaproteobacteria
Halomonas campisalis SS10-MC5 [CP065435]
2973644
2973569
-
Asn
GTT
-
¡û
>C231421760
CP099975
Gammaproteobacteria
Halomonas sp. Y3 [CP099975]
1497471
1497546
+
Asn
GTT
-
¡û
>C231421762
CP099975
Gammaproteobacteria
Halomonas sp. Y3 [CP099975]
1497675
1497750
+
Asn
GTT
-
¡û
>C231507464
CP107009
Gammaproteobacteria
Halomonas sp. LR3S48 [CP107009]
3059425
3059350
-
Asn
GTT
-
¡û
>C231507466
CP107009
Gammaproteobacteria
Halomonas sp. LR3S48 [CP107009]
3059176
3059101
-
Asn
GTT
-
¡û
>C241153814
CP053032
Gammaproteobacteria
Halomonas sp. PGE1 [CP053032]
2860575
2860500
-
Asn
GTT
-
¡û
>C241153816
CP053032
Gammaproteobacteria
Halomonas sp. PGE1 [CP053032]
2860373
2860298
-
Asn
GTT
-
¡û
>C241292952
CP130143
Gammaproteobacteria
Halomonas alkalicola M2 [CP130143]
2576277
2576202
-
Asn
GTT
-
¡û
>C241292954
CP130143
Gammaproteobacteria
Halomonas alkalicola M2 [CP130143]
2576024
2575949
-
Asn
GTT
-
¡û
>C241297781
CP131913
Gammaproteobacteria
Halomonas alkalicola CICC 11012s [CP131913]
3356214
3356289
+
Asn
GTT
-
¡û
>C241297783
CP131913
Gammaproteobacteria
Halomonas alkalicola CICC 11012s [CP131913]
3356420
3356495
+
Asn
GTT
-
¡û
>C161068833
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
1284240
1284315
+
Asn
GTT
[Ensembl]
¡û
>W121123964
BAEU01000143
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
35871
35796
-
Asn
GTT
[ENA]
¡û
>W121123966
BAEU01000143
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
35646
35571
-
Asn
GTT
[ENA]
¡û
>W1710519432
FNES01000009
Gammaproteobacteria
Halomonas gudaonensis [FNES]
125870
125795
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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