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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261279 (74 seq.)
>C171030956
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
1534325
1534249
-
Thr
TGT
-
¡û
>W141236481
BBIK01000006
Bacillota
Weissella hellenica [BBIK]
620
696
+
Thr
TGT
[ENA]
¡û
>C181082761
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
293476
293551
+
Thr
TGT
-
¡û
>C181143169
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1250830
1250904
+
Thr
TGT
-
¡û
>W09127221
ACKU01000016
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
754
678
-
Thr
TGT
[ENA]
¡û
>C191013647
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1221462
1221388
-
Thr
TGT
-
¡û
>W1910177457
BJDT01000004
Bacillota
Weissella sp. X0750 [BJDT]
182917
182842
-
Thr
TGT
[ENA]
¡û
>W1910177882
BJEC01000009
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
87553
87478
-
Thr
TGT
[ENA]
¡û
>W1910178013
BJEE01000004
Bacillota
Weissella bombi DSM 28794 [BJEE]
549
624
+
Thr
TGT
[ENA]
¡û
>W1810784459
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
831826
831752
-
Thr
TGT
[ENA]
¡û
>W1810784776
QRAY01000010
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
87316
87241
-
Thr
TGT
[ENA]
¡û
>W2010090834
BJDT01000004
Bacillota
Weissella sp. X0750 [BJDT]
182917
182842
-
Thr
TGT
[ENA]
¡û
>W2010091259
BJEC01000009
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
87553
87478
-
Thr
TGT
[ENA]
¡û
>W2010091390
BJEE01000004
Bacillota
Weissella bombi DSM 28794 [BJEE]
549
624
+
Thr
TGT
[ENA]
¡û
>W2010104378
BJYO01000001
Bacillota
Weissella soli NBRC 106074 [BJYO]
111
185
+
Thr
TGT
[ENA]
¡û
>W2010106520
BKAN01000008
Bacillota
Weissella thailandensis NBRC 109621 [BKAN]
87202
87127
-
Thr
TGT
[ENA]
¡û
>W2010138735
BLKA01000004
Bacillota
Weissella sp. X0278 [BLKA]
130860
130785
-
Thr
TGT
[ENA]
¡û
>W2010138804
BLKB01000003
Bacillota
Weissella sp. X0401 [BLKB]
167621
167546
-
Thr
TGT
[ENA]
¡û
>W2010264633
CABKOP020000001
Bacillota
Weissella paramesenteroides [CABKOP]
754
679
-
Thr
TGT
[ENA]
¡û
>W2010580931
JAAXPK010000009
Bacillota
Weissella thailandensis CCUG 46557 [JAAXPK]
87316
87241
-
Thr
TGT
[ENA]
¡û
>W2010580983
JAAXPL010000001
Bacillota
Weissella soli CCUG 46608 [JAAXPL]
832032
831958
-
Thr
TGT
[ENA]
¡û
>W2010581084
JAAXPM010000023
Bacillota
Weissella hellenica CCUG 33494 [JAAXPM]
178
253
+
Thr
TGT
[ENA]
¡û
>W2011241187
QFDF01000004
Bacillota
Weissella paramesenteroides TR212 [QFDF]
500
575
+
Thr
TGT
[ENA]
¡û
>W2011543889
SDGZ01000013
Bacillota
Weissella sp. 8H-2 [SDGZ]
161045
160973
-
Thr
TGT
[ENA]
¡û
>W2011550638
SDQP01000004
Bacillota
Weissella paramesenteroides N43 [SDQP]
201729
201654
-
Thr
TGT
[ENA]
¡û
>W2011550704
SDQQ01000004
Bacillota
Weissella paramesenteroides A37 [SDQQ]
181
256
+
Thr
TGT
[ENA]
¡û
>W2011559641
SGAX01000001
Bacillota
Weissella paramesenteroides WpK4 [SGAX]
267775
267850
+
Thr
TGT
[ENA]
¡û
>W2012032916
VHPB01000007
Bacillota
Weissella paramesenteroides DmW_118 [VHPB]
167075
167000
-
Thr
TGT
[ENA]
¡û
>W2012032981
VHPC01000013
Bacillota
Weissella paramesenteroides DmW_118119 [VHPC]
62678
62603
-
Thr
TGT
[ENA]
¡û
>W2012033048
VHPD01000012
Bacillota
Weissella paramesenteroides DmW_115114 [VHPD]
139
214
+
Thr
TGT
[ENA]
¡û
>W2012033082
VHPE01000002
Bacillota
Weissella paramesenteroides DmW_115113 [VHPE]
147
222
+
Thr
TGT
[ENA]
¡û
>W2012033182
VHPF01000016
Bacillota
Weissella paramesenteroides DmW_115112 [VHPF]
179829
179754
-
Thr
TGT
[ENA]
¡û
>W2012033209
VHPG01000001
Bacillota
Weissella paramesenteroides DmW_115 [VHPG]
91791
91716
-
Thr
TGT
[ENA]
¡û
>W2012033280
VHPH01000002
Bacillota
Weissella paramesenteroides DmW_115116 [VHPH]
145
220
+
Thr
TGT
[ENA]
¡û
>W2012033350
VHPI01000004
Bacillota
Weissella paramesenteroides DmW_109 [VHPI]
216822
216747
-
Thr
TGT
[ENA]
¡û
>W2012033435
VHPJ01000007
Bacillota
Weissella paramesenteroides DmW_109110 [VHPJ]
200
275
+
Thr
TGT
[ENA]
¡û
>W2012033514
VHPK01000014
Bacillota
Weissella paramesenteroides DmW_107108 [VHPK]
25814
25739
-
Thr
TGT
[ENA]
¡û
>W2012033581
VHPL01000047
Bacillota
Weissella paramesenteroides DmW_107105 [VHPL]
111478
111403
-
Thr
TGT
[ENA]
¡û
>W2012033617
VHPM01000005
Bacillota
Weissella paramesenteroides DmW_107104 [VHPM]
145
220
+
Thr
TGT
[ENA]
¡û
>W2012033687
VHPN01000012
Bacillota
Weissella paramesenteroides DmW_107101 [VHPN]
145
220
+
Thr
TGT
[ENA]
¡û
>W2012033757
VHPO01000005
Bacillota
Weissella paramesenteroides DmW_107102 [VHPO]
145
220
+
Thr
TGT
[ENA]
¡û
>W2012033813
VHPP01000001
Bacillota
Weissella paramesenteroides DmW_107 [VHPP]
399797
399872
+
Thr
TGT
[ENA]
¡û
>W2012033905
VHPQ01000010
Bacillota
Weissella paramesenteroides DmW_107106 [VHPQ]
111561
111486
-
Thr
TGT
[ENA]
¡û
>W2012033979
VHPR01000016
Bacillota
Weissella paramesenteroides DmW_107100 [VHPR]
137
212
+
Thr
TGT
[ENA]
¡û
>W2012034035
VHPS01000014
Bacillota
Weissella paramesenteroides DmW_107099 [VHPS]
111561
111486
-
Thr
TGT
[ENA]
¡û
>W2110579530
JAGXJA010000004
Bacillota
Weissella hellenica 1.2.50 [JAGXJA]
395
470
+
Thr
TGT
[ENA]
¡û
>W2110579584
JAGXJB010000003
Bacillota
Weissella paramesenteroides 3.2.24 [JAGXJB]
237975
237900
-
Thr
TGT
[ENA]
¡û
>W2110671234
JAIFOK010000002
Bacillota
Weissella viridescens LB10G [JAIFOK]
198716
198642
-
Thr
TGT
[ENA]
¡û
>C201055315
CP033608
Bacillota
Weissella hellenica 0916-4-2 [CP033608]
1362338
1362263
-
Thr
TGT
-
¡û
>C201111535
CP042399
Bacillota
Weissella hellenica CBA3632 [CP042399]
142709
142634
-
Thr
TGT
-
¡û
>C211059783
CP043431
Bacillota
Weissella koreensis SK [CP043431]
1209481
1209555
+
Thr
TGT
-
¡û
>C211137958
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
286867
286793
-
Thr
TGT
-
¡û
>C211153960
CP061835
Bacillota
Weissella viridescens NJ100 [CP061835]
507154
507228
+
Thr
TGT
-
¡û
>W2110724733
JAJCFZ010000006
Bacillota
Weissella viridescens MSK.22.110 [JAJCFZ]
625
699
+
Thr
TGT
[ENA]
¡û
>C231220481
CP086020
Bacillota
Weissella hellenica MBEL1842 [CP086020]
414401
414326
-
Thr
TGT
-
¡û
>C231615868
CP118737
Bacillota
Weissella paramesenteroides FL3 [CP118737]
1455392
1455317
-
Thr
TGT
-
¡û
>C241138637
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1263365
1263291
-
Thr
TGT
-
¡û
>C241139417
CP049940
Bacillota
Weissella paramesenteroides W31 [CP049940]
1403911
1403836
-
Thr
TGT
-
¡û
>C241235059
CP118690
Bacillota
Weissella viridescens PC45 [CP118690]
507142
507216
+
Thr
TGT
-
¡û
>C241378284
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
1228814
1228888
+
Thr
TGT
-
¡û
>WENV11100342
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
377
451
+
Thr
TGT
[ENA]
¡û
>C11123753
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1173437
1173511
+
Thr
TGT
[Ensembl]
¡û
>W1511479135
JWHV01000020
Bacillota
Weissella cibaria ff3PR [JWHV]
34428
34353
-
Thr
TGT
[ENA]
¡û
>W121082020
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
244578
244652
+
Thr
TGT
[ENA]
¡û
>W1610097788
CYXF01000148
Bacillota
Weissella viridescens [CYXF]
610
684
+
Thr
TGT
[ENA]
¡û
>W1610514793
FMAO01000003
Bacillota
Weissella bombi [FMAO]
128789
128713
-
Thr
TGT
[ENA]
¡û
>W1610515273
FMAW01000026
Bacillota
Weissella hellenica [FMAW]
146
222
+
Thr
TGT
[ENA]
¡û
>W1610528737
JQBM01000008
Bacillota
Weissella viridescens [JQBM]
101
27
-
Thr
TGT
[ENA]
¡û
>W1610528845
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
286133
286058
-
Thr
TGT
[ENA]
¡û
>W1710100543
CYXF01000148
Bacillota
Weissella viridescens [CYXF]
610
684
+
Thr
TGT
[ENA]
¡û
>W1710500483
FMAO01000003
Bacillota
Weissella bombi [FMAO]
128789
128713
-
Thr
TGT
[ENA]
¡û
>W1710500963
FMAW01000026
Bacillota
Weissella hellenica [FMAW]
146
222
+
Thr
TGT
[ENA]
¡û
>W1710630327
JQBM01000008
Bacillota
Weissella viridescens [JQBM]
101
27
-
Thr
TGT
[ENA]
¡û
>W1710630435
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
286133
286058
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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