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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26141 (83 seq.)
>W1710876370
LMPE01000003
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
1116320
1116409
+
Ser
GGA
[ENA]
¡û
>W1710877471
LMQD01000001
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
749648
749737
+
Ser
GGA
[ENA]
¡û
>W1710877527
LMQE01000001
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
1744111
1744200
+
Ser
GGA
[ENA]
¡û
>W1710887833
LMZF01000033
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
44749
44838
+
Ser
GGA
[ENA]
¡û
>W1710935921
LOKV01000023
Alphaproteobacteria
Rhizobium sp. R339 [LOKV]
161521
161432
-
Ser
GGA
[ENA]
¡û
>W1710935942
LOKW01000003
Alphaproteobacteria
Rhizobium sp. R634 [LOKW]
119734
119823
+
Ser
GGA
[ENA]
¡û
>W1711253096
LYPK01000004
Alphaproteobacteria
Rhizobium bangladeshense [LYPK]
129641
129552
-
Ser
GGA
[ENA]
¡û
>W1711253128
LYPL01000001
Alphaproteobacteria
Rhizobium bangladeshense [LYPL]
656548
656637
+
Ser
GGA
[ENA]
¡û
>W1711253192
LYPM01000004
Alphaproteobacteria
Rhizobium aegyptiacum [LYPM]
143095
143006
-
Ser
GGA
[ENA]
¡û
>W1711253241
LYPN01000003
Alphaproteobacteria
Rhizobium bangladeshense [LYPN]
387905
387994
+
Ser
GGA
[ENA]
¡û
>W1711283480
LZPI01000004
Alphaproteobacteria
Rhizobium sp. YK2 [LZPI]
133369
133280
-
Ser
GGA
[ENA]
¡û
>W1711501099
MKRF01000050
Alphaproteobacteria
Rhizobium sp. 63-7 [MKRF]
1414
1325
-
Ser
GGA
[ENA]
¡û
>W1711667367
MRDK01000067
Alphaproteobacteria
Rhizobium sophorae [MRDK]
49073
49162
+
Ser
GGA
[ENA]
¡û
>C171114509
CP020896
Alphaproteobacteria
Rhizobium phaseoli Brasil 5 [CP020896]
209751
209662
-
Ser
GGA
-
¡û
>C171114646
CP020906
Alphaproteobacteria
Rhizobium etli NXC12 [CP020906]
200105
200016
-
Ser
GGA
-
¡û
>W131227337
AUFB01000021
Alphaproteobacteria
Rhizobium leucaenae USDA 9039 [AUFB]
44970
45059
+
Ser
GGA
[ENA]
¡û
>W141065170
AQHN01000089
Alphaproteobacteria
Rhizobium freirei PRF 81 [AQHN]
558034
557945
-
Ser
GGA
[ENA]
¡û
>WENV180691812
OCZS010228406
[OCZS] soil metagenome; soil
514
426
-
Ser
GGA
[ENA]
¢þ
>W08010441
ABQY01002412
Alphaproteobacteria
Rhizobium etli Kim 5 [ABQY] Kim 5 [ABQY]
1340
1254
-
Ser
GGA
[ENA]
¡û
>W08010525
ABRA01002470
Alphaproteobacteria
Rhizobium etli 8C-3 [ABRA]
2747
2661
-
Ser
GGA
[ENA]
¡û
>W08010580
ABRC01002603
Alphaproteobacteria
Rhizobium etli IE4771 [ABRC]
2552
2466
-
Ser
GGA
[ENA]
¡û
>C08008178
CP001074
Alphaproteobacteria
Rhizobium etli CIAT 652 [CP001074]
247895
247809
-
Ser
GGA
[Ensembl]
¡û
>WENV170713665
LNFM01037918
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
126
40
-
Ser
GGA
[ENA]
¢þ
>W141461589
JFGP01000005
Alphaproteobacteria
Rhizobium leguminosarum bv. phaseoli CCGM1 [JFGP]
632049
631960
-
Ser
GGA
[ENA]
¡û
>C181074771
CP022998
Alphaproteobacteria
Rhizobium sp. 11515TR [CP022998]
883077
882988
-
Ser
GGA
-
¡û
>C181099284
CP024311
Alphaproteobacteria
Rhizobium sp. NXC24 [CP024311]
236025
235936
-
Ser
GGA
-
¡û
>C191093783
CP032694
Alphaproteobacteria
Rhizobium jaguaris CCGE525 [CP032694]
311499
311410
-
Ser
GGA
-
¡û
>W1910831862
MXPU01000001
Alphaproteobacteria
Rhizobium esperanzae CNPSo 668 [MXPU]
404813
404902
+
Ser
GGA
[ENA]
¡û
>W1910840533
MZZP01000001
Alphaproteobacteria
Rhizobium phaseoli CCGM2 [MZZP]
173509
173420
-
Ser
GGA
[ENA]
¡û
>W1910840583
MZZZ01000005
Alphaproteobacteria
Rhizobium phaseoli CCGM8 [MZZZ]
48784
48695
-
Ser
GGA
[ENA]
¡û
>W1910840628
NAAA01000009
Alphaproteobacteria
Rhizobium phaseoli CCGM9 [NAAA]
48809
48720
-
Ser
GGA
[ENA]
¡û
>W1911408861
NWSI01000030
Alphaproteobacteria
Rhizobium phaseoli Y20 [NWSI]
26873
26962
+
Ser
GGA
[ENA]
¡û
>W1911409102
NWSO01000001
Alphaproteobacteria
Rhizobium phaseoli Y18 [NWSO]
181029
180940
-
Ser
GGA
[ENA]
¡û
>W1911409151
NWSP01000010
Alphaproteobacteria
Rhizobium phaseoli NC1 [NWSP]
38552
38641
+
Ser
GGA
[ENA]
¡û
>W1911409345
NWSU01000020
Alphaproteobacteria
Rhizobium sp. S9 [NWSU]
31512
31601
+
Ser
GGA
[ENA]
¡û
>W1911409430
NWSW01000017
Alphaproteobacteria
Rhizobium sp. M1 [NWSW]
134527
134438
-
Ser
GGA
[ENA]
¡û
>W1911409614
NWTA01000019
Alphaproteobacteria
Rhizobium sp. M10 [NWTA]
134703
134614
-
Ser
GGA
[ENA]
¡û
>W1911421169
NXDM01000016
Alphaproteobacteria
Rhizobium sophoriradicis L101 [NXDM]
38764
38853
+
Ser
GGA
[ENA]
¡û
>W1911421213
NXDN01000010
Alphaproteobacteria
Rhizobium sophoriradicis JJW1 [NXDN]
38308
38397
+
Ser
GGA
[ENA]
¡û
>W1810403637
PYJN01000001
Alphaproteobacteria
Rhizobium sp. SEMIA4064 [PYJN]
270420
270331
-
Ser
GGA
[ENA]
¡û
>W1810403807
PYJQ01000001
Alphaproteobacteria
Rhizobium sp. JAB6 [PYJQ]
184923
184834
-
Ser
GGA
[ENA]
¡û
>W1810584571
QFBC01000004
Alphaproteobacteria
Rhizobium album NS-104 [QFBC]
237085
236996
-
Ser
GGA
[ENA]
¡û
>W1810706793
QMKK01000027
Alphaproteobacteria
Rhizobium tropici IGFRI Rhizo-19 [QMKK]
92463
92374
-
Ser
GGA
[ENA]
¡û
>W1810758744
QPIX01000007
Alphaproteobacteria
Ciceribacter lividus DSM 25528 [QPIX]
168610
168699
+
Ser
GGA
[ENA]
¡û
>C151015753
CP006986
Alphaproteobacteria
Rhizobium sp. IE4771 [CP006986]
214220
214131
-
Ser
GGA
[Ensembl]
¡û
>C151030893
CP007641
Alphaproteobacteria
Rhizobium etli bv. phaseoli str. IE4803 [CP007641]
213987
213898
-
Ser
GGA
[Ensembl]
¡û
>W11152866
AEYZ01000134
Alphaproteobacteria
Rhizobium etli CNPAF512 [AEYZ]
24927
24838
-
Ser
GGA
[ENA]
¡û
>C161056528
CP013495
Alphaproteobacteria
Rhizobium sp. N621 [CP013495]
224863
224774
-
Ser
GGA
-
¡û
>C161056579
CP013500
Alphaproteobacteria
Rhizobium esperanzae N561 [CP013500]
201115
201026
-
Ser
GGA
-
¡û
>C161056630
CP013505
Alphaproteobacteria
Rhizobium sp. N1341 [CP013505]
201157
201068
-
Ser
GGA
-
¡û
>C161056681
CP013511
Alphaproteobacteria
Rhizobium sp. N1314 [CP013511]
201565
201476
-
Ser
GGA
-
¡û
>C161056732
CP013517
Alphaproteobacteria
Rhizobium sp. N113 [CP013517]
201157
201068
-
Ser
GGA
[Ensembl]
¡û
>C161056783
CP013522
Alphaproteobacteria
Rhizobium phaseoli R744 [CP013522]
246072
245983
-
Ser
GGA
-
¡û
>C161056834
CP013527
Alphaproteobacteria
Rhizobium phaseoli R723 [CP013527]
248223
248134
-
Ser
GGA
-
¡û
>C161056884
CP013532
Alphaproteobacteria
Rhizobium phaseoli R650 [CP013532]
247034
246945
-
Ser
GGA
-
¡û
>C161056935
CP013537
Alphaproteobacteria
Rhizobium phaseoli R630 [CP013537]
246611
246522
-
Ser
GGA
[Ensembl]
¡û
>C161056986
CP013542
Alphaproteobacteria
Rhizobium phaseoli R620 [CP013542]
245659
245570
-
Ser
GGA
-
¡û
>C161057036
CP013547
Alphaproteobacteria
Rhizobium phaseoli R611 [CP013547]
247034
246945
-
Ser
GGA
-
¡û
>C161057087
CP013552
Alphaproteobacteria
Rhizobium phaseoli N931 [CP013552]
248681
248592
-
Ser
GGA
-
¡û
>C161057138
CP013557
Alphaproteobacteria
Rhizobium phaseoli N841 [CP013557]
249775
249686
-
Ser
GGA
-
¡û
>C161057189
CP013563
Alphaproteobacteria
Rhizobium phaseoli N831 [CP013563]
248681
248592
-
Ser
GGA
-
¡û
>C161057241
CP013568
Alphaproteobacteria
Rhizobium phaseoli N771 [CP013568]
247160
247071
-
Ser
GGA
-
¡û
>C161057293
CP013574
Alphaproteobacteria
Rhizobium phaseoli N671 [CP013574]
247013
246924
-
Ser
GGA
[Ensembl]
¡û
>C161057395
CP013585
Alphaproteobacteria
Rhizobium phaseoli N161 [CP013585]
249944
249855
-
Ser
GGA
-
¡û
>C161057497
CP013595
Alphaproteobacteria
Rhizobium sp. N741 [CP013595]
201157
201068
-
Ser
GGA
[Ensembl]
¡û
>C161057548
CP013601
Alphaproteobacteria
Rhizobium sp. N731 [CP013601]
201565
201476
-
Ser
GGA
-
¡û
>W121033681
AHJU01000116
Alphaproteobacteria
Rhizobium phaseoli Ch24-10 [AHJU]
58263
58352
+
Ser
GGA
[ENA]
¡û
>W1610514343
FMAC01000014
Alphaproteobacteria
Rhizobium hainanense [FMAC]
42601
42690
+
Ser
GGA
[ENA]
¡û
>W1610514521
FMAG01000005
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
96486
96397
-
Ser
GGA
[ENA]
¡û
>W1610514658
FMAJ01000003
Alphaproteobacteria
Rhizobium aethiopicum HBR26 [FMAJ]
398905
398994
+
Ser
GGA
[ENA]
¡û
>W1610738716
LMPE01000003
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
1116320
1116409
+
Ser
GGA
[ENA]
¡û
>W1610739817
LMQD01000001
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
749648
749737
+
Ser
GGA
[ENA]
¡û
>W1610739873
LMQE01000001
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
1744111
1744200
+
Ser
GGA
[ENA]
¡û
>W1610748533
LMZF01000033
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
44749
44838
+
Ser
GGA
[ENA]
¡û
>W1611017633
LYPK01000004
Alphaproteobacteria
Rhizobium bangladeshense [LYPK]
129641
129552
-
Ser
GGA
[ENA]
¡û
>W1611017665
LYPL01000001
Alphaproteobacteria
Rhizobium bangladeshense [LYPL]
656548
656637
+
Ser
GGA
[ENA]
¡û
>W1611017729
LYPM01000004
Alphaproteobacteria
Rhizobium aegyptiacum [LYPM]
143095
143006
-
Ser
GGA
[ENA]
¡û
>W1611017778
LYPN01000003
Alphaproteobacteria
Rhizobium bangladeshense [LYPN]
387905
387994
+
Ser
GGA
[ENA]
¡û
>W1710500033
FMAC01000014
Alphaproteobacteria
Rhizobium hainanense [FMAC]
42601
42690
+
Ser
GGA
[ENA]
¡û
>W1710500211
FMAG01000005
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
96486
96397
-
Ser
GGA
[ENA]
¡û
>W1710500348
FMAJ01000003
Alphaproteobacteria
Rhizobium aethiopicum HBR26 [FMAJ]
398905
398994
+
Ser
GGA
[ENA]
¡û
>W1710552192
FOGR01000002
Alphaproteobacteria
Rhizobium sp. NFR03 [FOGR]
50752
50663
-
Ser
GGA
[ENA]
¡û
>W1710595643
FTMB01000003
Alphaproteobacteria
Rhizobium sp. RU20A [FTMB]
274492
274581
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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