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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261571 (72 seq.)
>W131164576
ARAX01000001
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
844406
844479
+
Asn
GTT
[ENA]
¡û
>W1711334212
MBQD01000023
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
109327
109252
-
Asn
GTT
[ENA]
¡û
>C171091496
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
3075526
3075601
+
Asn
GTT
-
¡û
>C171096239
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
982599
982674
+
Asn
GTT
-
¡û
>C171096323
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
78315
78242
-
Asn
GTT
-
¡û
>WENV180727946
ODGU01017752
[ODGU] human metagenome; G_DNA_Supragingival plaque
1876
1803
-
Asn
GTT
[ENA]
¢þ
>WENV180728584
ODGU01066769
[ODGU] human metagenome; G_DNA_Supragingival plaque
533
460
-
Asn
GTT
[ENA]
¢þ
>WENV180733916
ODGZ01001345
[ODGZ] human metagenome; G_DNA_Supragingival plaque
3768
3841
+
Asn
GTT
[ENA]
¢þ
>WENV180733979
ODGZ01001729
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1175
1248
+
Asn
GTT
[ENA]
¢þ
>WENV180735992
ODHB01002846
[ODHB] human metagenome; G_DNA_Supragingival plaque
4401
4474
+
Asn
GTT
[ENA]
¢þ
>WENV180749882
ODHS01000065
[ODHS] human metagenome; G_DNA_Supragingival plaque
58388
58315
-
Asn
GTT
[ENA]
¢þ
>WENV180777146
ODIL01000162
[ODIL] human metagenome; G_DNA_Supragingival plaque
5905
5832
-
Asn
GTT
[ENA]
¢þ
>WENV180796519
ODJB01006178
[ODJB] human metagenome; G_DNA_Supragingival plaque
4675
4602
-
Asn
GTT
[ENA]
¢þ
>WENV180804320
ODJG01001644
[ODJG] human metagenome; G_DNA_Supragingival plaque
6844
6917
+
Asn
GTT
[ENA]
¢þ
>WENV180804600
ODJG01006900
[ODJG] human metagenome; G_DNA_Supragingival plaque
296
223
-
Asn
GTT
[ENA]
¢þ
>WENV180823091
ODJW01004549
[ODJW] human metagenome; G_DNA_Supragingival plaque
2005
1932
-
Asn
GTT
[ENA]
¢þ
>WENV180823452
ODJW01033102
[ODJW] human metagenome; G_DNA_Supragingival plaque
745
672
-
Asn
GTT
[ENA]
¢þ
>WENV180832655
ODKC01002956
[ODKC] human metagenome; G_DNA_Supragingival plaque
3208
3281
+
Asn
GTT
[ENA]
¢þ
>WENV180833947
ODKD01001150
[ODKD] human metagenome; G_DNA_Supragingival plaque
5554
5627
+
Asn
GTT
[ENA]
¢þ
>WENV180834311
ODKD01010886
[ODKD] human metagenome; G_DNA_Supragingival plaque
651
578
-
Asn
GTT
[ENA]
¢þ
>WENV180835825
ODKE01014888
[ODKE] human metagenome; G_DNA_Supragingival plaque
1493
1420
-
Asn
GTT
[ENA]
¢þ
>WENV180844042
ODKN01027216
[ODKN] human metagenome; G_DNA_Supragingival plaque
910
983
+
Asn
GTT
[ENA]
¢þ
>WENV180846956
ODKT01031509
[ODKT] human metagenome; G_DNA_Supragingival plaque
1550
1623
+
Asn
GTT
[ENA]
¢þ
>WENV180859260
ODLD01000154
[ODLD] human metagenome; G_DNA_Supragingival plaque
16413
16340
-
Asn
GTT
[ENA]
¢þ
>WENV180922504
ODTJ01004962
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3265
3192
-
Asn
GTT
[ENA]
¢þ
>WENV180924217
ODTK01001959
[ODTK] human metagenome; G_DNA_Supragingival plaque
10177
10250
+
Asn
GTT
[ENA]
¢þ
>WENV180927242
ODTM01000090
[ODTM] human metagenome; G_DNA_Supragingival plaque
10545
10472
-
Asn
GTT
[ENA]
¢þ
>WENV180927898
ODTM01006507
[ODTM] human metagenome; G_DNA_Supragingival plaque
917
844
-
Asn
GTT
[ENA]
¢þ
>WENV180928128
ODTM01016390
[ODTM] human metagenome; G_DNA_Supragingival plaque
917
844
-
Asn
GTT
[ENA]
¢þ
>WENV180933299
ODTR01000015
[ODTR] human metagenome; G_DNA_Supragingival plaque
113094
113021
-
Asn
GTT
[ENA]
¢þ
>WENV180934374
ODTS01000001
[ODTS] human metagenome; G_DNA_Subgingival plaque
369061
368988
-
Asn
GTT
[ENA]
¢þ
>WENV180935072
ODTS01039614
[ODTS] human metagenome; G_DNA_Subgingival plaque
364
291
-
Asn
GTT
[ENA]
¢þ
>WENV180938340
ODTX01001459
[ODTX] human metagenome; G_DNA_Supragingival plaque
10548
10475
-
Asn
GTT
[ENA]
¢þ
>WENV180938357
ODTX01001564
[ODTX] human metagenome; G_DNA_Supragingival plaque
2639
2712
+
Asn
GTT
[ENA]
¢þ
>WENV180944787
ODUC01035774
[ODUC] human metagenome; G_DNA_Supragingival plaque
1190
1263
+
Asn
GTT
[ENA]
¢þ
>WENV180944925
ODUC01048629
[ODUC] human metagenome; G_DNA_Supragingival plaque
334
261
-
Asn
GTT
[ENA]
¢þ
>WENV180963889
ODUO01000019
[ODUO] human metagenome; G_DNA_Supragingival plaque
94076
94149
+
Asn
GTT
[ENA]
¢þ
>WENV180973457
ODUW01006232
[ODUW] human metagenome; G_DNA_Supragingival plaque
2
75
+
Asn
GTT
[ENA]
¢þ
>WENV180980461
ODVE01000225
[ODVE] human metagenome; G_DNA_Supragingival plaque
14635
14708
+
Asn
GTT
[ENA]
¢þ
>WENV180982561
ODVF01000100
[ODVF] human metagenome; G_DNA_Supragingival plaque
28247
28320
+
Asn
GTT
[ENA]
¢þ
>WENV181002130
ODVX01000040
[ODVX] human metagenome; G_DNA_Supragingival plaque
10880
10807
-
Asn
GTT
[ENA]
¢þ
>WENV181007754
ODWE01000605
[ODWE] human metagenome; G_DNA_Supragingival plaque
21729
21802
+
Asn
GTT
[ENA]
¢þ
>WENV181008449
ODWE01005518
[ODWE] human metagenome; G_DNA_Supragingival plaque
2944
3017
+
Asn
GTT
[ENA]
¢þ
>WENV181008654
ODWE01010081
[ODWE] human metagenome; G_DNA_Supragingival plaque
1147
1220
+
Asn
GTT
[ENA]
¢þ
>WENV181049720
ODYD01001636
[ODYD] human metagenome; G_DNA_Supragingival plaque
1605
1678
+
Asn
GTT
[ENA]
¢þ
>WENV181050036
ODYD01004927
[ODYD] human metagenome; G_DNA_Supragingival plaque
173
246
+
Asn
GTT
[ENA]
¢þ
>WENV181063366
ODYP01000521
[ODYP] human metagenome; G_DNA_Supragingival plaque
4356
4429
+
Asn
GTT
[ENA]
¢þ
>WENV181070511
OEAE01002590
[OEAE] human metagenome; G_DNA_Supragingival plaque
3405
3332
-
Asn
GTT
[ENA]
¢þ
>WENV181070521
OEAE01002724
[OEAE] human metagenome; G_DNA_Supragingival plaque
5115
5188
+
Asn
GTT
[ENA]
¢þ
>WENV181070791
OEAE01010569
[OEAE] human metagenome; G_DNA_Supragingival plaque
917
844
-
Asn
GTT
[ENA]
¢þ
>WENV181076345
OEAP01004032
[OEAP] human metagenome; G_DNA_Supragingival plaque
3884
3957
+
Asn
GTT
[ENA]
¢þ
>WENV181078750
OEAS01000449
[OEAS] human metagenome; G_DNA_Supragingival plaque
10004
9931
-
Asn
GTT
[ENA]
¢þ
>WENV181078852
OEAS01000754
[OEAS] human metagenome; G_DNA_Supragingival plaque
7968
7895
-
Asn
GTT
[ENA]
¢þ
>WENV181082757
OEAV01000468
[OEAV] human metagenome; G_DNA_Supragingival plaque
14031
14104
+
Asn
GTT
[ENA]
¢þ
>WENV181145995
OEHQ01000408
[OEHQ] human metagenome; G_DNA_Supragingival plaque
18063
18136
+
Asn
GTT
[ENA]
¢þ
>WENV181146670
OEHQ01014990
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1166
1239
+
Asn
GTT
[ENA]
¢þ
>WENV181156368
OEIE01011571
[OEIE] human metagenome; G_DNA_Supragingival plaque
796
723
-
Asn
GTT
[ENA]
¢þ
>WENV181179085
OEJT01001275
[OEJT] human metagenome; G_DNA_Supragingival plaque
2679
2752
+
Asn
GTT
[ENA]
¢þ
>WENV181181742
OEJV01000157
[OEJV] human metagenome; G_DNA_Supragingival plaque
16757
16830
+
Asn
GTT
[ENA]
¢þ
>WENV181285748
OFGT01010522
[OFGT] soil metagenome; Clay
213
139
-
Asn
GTT
[ENA]
¢þ
>WENV182629627
OJKT01005733
[OJKT] metagenome; surface
613
538
-
Asn
GTT
[ENA]
¢þ
>W141284030
JALM01000010
Actinomycetota
Sciscionella sp. SE31 [JALM]
57747
57820
+
Asn
GTT
[ENA]
¡û
>WENV170465009
CEVD01359816
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
126
198
+
Asn
GTT
[ENA]
¢þ
>C191173826
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1575982
1576055
+
Asn
GTT
-
¡û
>C191210841
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1570930
1571003
+
Asn
GTT
-
¡û
>C191214556
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1563477
1563550
+
Asn
GTT
-
¡û
>C121002933
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1588321
1588394
+
Asn
GTT
[Ensembl]
¡û
>W1610074475
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
622084
622011
-
Asn
GTT
[ENA]
¡û
>W1611066179
MBQD01000023
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
109327
109252
-
Asn
GTT
[ENA]
¡û
>W1710071593
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
622084
622011
-
Asn
GTT
[ENA]
¡û
>W1710521719
FNGP01000004
Actinomycetota
Tessaracoccus oleiagri [FNGP]
207415
207490
+
Asn
GTT
[ENA]
¡û
>W1710588353
FQZG01000081
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
288
213
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK