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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261987 (93 seq.)
>W1710804013
LJYX01000019
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
165972
166047
+
Thr
TGT
[ENA]
¡û
>W1710804017
LJYX01000021
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
640381
640306
-
Thr
TGT
[ENA]
¡û
>W1711228019
LXWE01000004
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
167488
167413
-
Thr
TGT
[ENA]
¡û
>W1711228024
LXWE01000011
Gammaproteobacteria
Alteromonadaceae bacterium XY-R5 [LXWE]
125513
125588
+
Thr
TGT
[ENA]
¡û
>W131241517
BARX01000032
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
53441
53516
+
Thr
TGT
[ENA]
¡û
>W131241526
BARX01000044
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
18266
18341
+
Thr
TGT
[ENA]
¡û
>W1711690190
MSEI01000008
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
6154
6229
+
Thr
TGT
[ENA]
¡û
>W1711767382
MUZU01000003
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
573
498
-
Thr
TGT
[ENA]
¡û
>W1711767413
MUZU01000020
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
18537
18612
+
Thr
TGT
[ENA]
¡û
>W1711947422
NBOC01000002
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
192620
192545
-
Thr
TGT
[ENA]
¡û
>W1711947425
NBOC01000003
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
136560
136485
-
Thr
TGT
[ENA]
¡û
>W1711947556
NBOE01000004
Gammaproteobacteria
Colwellia polaris [NBOE]
290268
290343
+
Thr
TGT
[ENA]
¡û
>W1711947568
NBOE01000006
Gammaproteobacteria
Colwellia polaris [NBOE]
26298
26223
-
Thr
TGT
[ENA]
¡û
>W1712070444
NGNS01000002
Gammaproteobacteria
Neiella marina [NGNS]
125815
125740
-
Thr
TGT
[ENA]
¡û
>WENV014467
AACY020401529
Marine microbial communities from Global Ocean Sampling (GOS)
184
107
-
Thr
TGT
[ENA]
>WENV170023648
BCQL01000697
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6000
5925
-
Thr
TGT
[ENA]
¡û
>WENV170023913
BCQL01009547
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1228
1303
+
Thr
TGT
[ENA]
¡û
>WENV021236
AACY020564210
Marine microbial communities from Global Ocean Sampling (GOS)
1890
1967
+
Thr
TGT
[ENA]
>W1910178257
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
686586
686511
-
Thr
TGT
[ENA]
¡û
>W1910178275
BJEQ01000014
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
73480
73405
-
Thr
TGT
[ENA]
¡û
>W1910237524
FPLD01000079
Gammaproteobacteria
Moritella viscosa [FPLD]
42713
42788
+
Thr
TGT
[ENA]
¡û
>W1910237664
FPLF01000076
Gammaproteobacteria
Moritella viscosa [FPLF]
100489
100564
+
Thr
TGT
[ENA]
¡û
>W1910237674
FPLF01000094
Gammaproteobacteria
Moritella viscosa [FPLF]
42614
42689
+
Thr
TGT
[ENA]
¡û
>W1910282878
FRDS01000083
Gammaproteobacteria
Moritella viscosa [FRDS]
14891
14966
+
Thr
TGT
[ENA]
¡û
>W1910282893
FRDS01000099
Gammaproteobacteria
Moritella viscosa [FRDS]
42647
42722
+
Thr
TGT
[ENA]
¡û
>W1910285519
FRFG01000016
Gammaproteobacteria
Vibrio quintilis [FRFG]
64444
64369
-
Thr
TGT
[ENA]
¡û
>W1910285524
FRFG01000016
Gammaproteobacteria
Vibrio quintilis [FRFG]
63602
63527
-
Thr
TGT
[ENA]
¡û
>W2010091596
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
686586
686511
-
Thr
TGT
[ENA]
¡û
>W2010091614
BJEQ01000014
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
73480
73405
-
Thr
TGT
[ENA]
¡û
>W2010582654
JAAZST010000044
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG7 [JAAZST]
7482
7557
+
Thr
TGT
[ENA]
¡û
>W2010582681
JAAZSU010000047
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG6 [JAAZSU]
13416
13341
-
Thr
TGT
[ENA]
¡û
>W2010582714
JAAZSW010000050
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG4 [JAAZSW]
13413
13338
-
Thr
TGT
[ENA]
¡û
>W2010582764
JAAZSY010000018
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG2 [JAAZSY]
37255
37180
-
Thr
TGT
[ENA]
¡û
>W2010582767
JAAZSY010000032
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG2 [JAAZSY]
20037
19962
-
Thr
TGT
[ENA]
¡û
>W2010582781
JAAZSZ010000020
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG1 [JAAZSZ]
47993
47918
-
Thr
TGT
[ENA]
¡û
>W2010582788
JAAZSZ010000049
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG1 [JAAZSZ]
4921
4996
+
Thr
TGT
[ENA]
¡û
>W2010635844
JABULX010000043
Gammaproteobacteria
Catenovulum sp. SM1970 [JABULX]
77
2
-
Thr
TGT
[ENA]
¡û
>W2010689245
JACGUY010000164
Gammaproteobacteria
Colwellia sp. MB02u-11 [JACGUY]
502574
502499
-
Thr
TGT
[ENA]
¡û
>W2010689267
JACGUY010000190
Gammaproteobacteria
Colwellia sp. MB02u-11 [JACGUY]
739
664
-
Thr
TGT
[ENA]
¡û
>W2010689688
JACGVE010000079
Gammaproteobacteria
Colwellia sp. MB3u-4 [JACGVE]
34943
34868
-
Thr
TGT
[ENA]
¡û
>W2010689714
JACGVE010000089
Gammaproteobacteria
Colwellia sp. MB3u-4 [JACGVE]
226553
226478
-
Thr
TGT
[ENA]
¡û
>W2010689973
JACGVI010000048
Gammaproteobacteria
Colwellia sp. MB02u-18 [JACGVI]
193368
193443
+
Thr
TGT
[ENA]
¡û
>W2010689988
JACGVI010000053
Gammaproteobacteria
Colwellia sp. MB02u-18 [JACGVI]
207065
207140
+
Thr
TGT
[ENA]
¡û
>W2010690030
JACGVJ010000039
Gammaproteobacteria
Colwellia sp. MB02u-12 [JACGVJ]
472
397
-
Thr
TGT
[ENA]
¡û
>W2010690031
JACGVJ010000041
Gammaproteobacteria
Colwellia sp. MB02u-12 [JACGVJ]
5793
5868
+
Thr
TGT
[ENA]
¡û
>W2010690237
JACGVM010000001
Gammaproteobacteria
Colwellia sp. BRX9-1 [JACGVM]
455034
454959
-
Thr
TGT
[ENA]
¡û
>W2010690279
JACGVM010000024
Gammaproteobacteria
Colwellia sp. BRX9-1 [JACGVM]
57306
57381
+
Thr
TGT
[ENA]
¡û
>W2010690377
JACGVO010000068
Gammaproteobacteria
Colwellia sp. BRX8-8 [JACGVO]
5133
5208
+
Thr
TGT
[ENA]
¡û
>W2010690472
JACGVQ010000001
Gammaproteobacteria
Colwellia sp. BRX8-6 [JACGVQ]
89580
89655
+
Thr
TGT
[ENA]
¡û
>W2010690501
JACGVQ010000024
Gammaproteobacteria
Colwellia sp. BRX8-6 [JACGVQ]
57268
57343
+
Thr
TGT
[ENA]
¡û
>W2010690549
JACGVR010000001
Gammaproteobacteria
Colwellia sp. BRX8-5 [JACGVR]
120330
120255
-
Thr
TGT
[ENA]
¡û
>W2010690575
JACGVR010000024
Gammaproteobacteria
Colwellia sp. BRX8-5 [JACGVR]
57277
57352
+
Thr
TGT
[ENA]
¡û
>W2010690618
JACGVS010000002
Gammaproteobacteria
Colwellia sp. BRX8-4 [JACGVS]
223527
223452
-
Thr
TGT
[ENA]
¡û
>W2010690674
JACGVS010000046
Gammaproteobacteria
Colwellia sp. BRX8-4 [JACGVS]
5226
5301
+
Thr
TGT
[ENA]
¡û
>W2010691030
JACGVY010000001
Gammaproteobacteria
Colwellia sp. BRX10-5 [JACGVY]
172192
172267
+
Thr
TGT
[ENA]
¡û
>W2010691084
JACGVY010000059
Gammaproteobacteria
Colwellia sp. BRX10-5 [JACGVY]
643
568
-
Thr
TGT
[ENA]
¡û
>W2010703019
JACHHU010000008
Gammaproteobacteria
Thalassotalea piscium DSM 26287 [JACHHU]
134843
134918
+
Thr
TGT
[ENA]
¡û
>W2010703048
JACHHU010000040
Gammaproteobacteria
Thalassotalea piscium DSM 26287 [JACHHU]
28582
28657
+
Thr
TGT
[ENA]
¡û
>W2011858165
UNRE01000007
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
785
710
-
Thr
TGT
[ENA]
¡û
>W2011858200
UNRE01000014
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
18635
18710
+
Thr
TGT
[ENA]
¡û
>W2012330194
WHRY01000004
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
392466
392541
+
Thr
TGT
[ENA]
¡û
>W2012330223
WHRY01000013
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
19213
19288
+
Thr
TGT
[ENA]
¡û
>W2110016226
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
2727197
2727272
+
Thr
TGT
[ENA]
¡û
>W2110016266
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
1117647
1117572
-
Thr
TGT
[ENA]
¡û
>W2110020792
BMDY01000011
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
803
728
-
Thr
TGT
[ENA]
¡û
>W2110020822
BMDY01000035
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
1832
1757
-
Thr
TGT
[ENA]
¡û
>W2110171571
JABBXD010000020
Gammaproteobacteria
Salinimonas profundi HHU 13199 [JABBXD]
506
431
-
Thr
TGT
[ENA]
¡û
>W2110547301
JAGHQT010000001
Gammaproteobacteria
Endozoicomonas sp. G2_1 [JAGHQT]
620271
620346
+
Thr
TGT
[ENA]
¡û
>W2110547364
JAGHQT010000032
Gammaproteobacteria
Endozoicomonas sp. G2_1 [JAGHQT]
3247
3322
+
Thr
TGT
[ENA]
¡û
>W2110611024
JAHKPC010000040
Gammaproteobacteria
Psychrosphaera sp. I2R16 [JAHKPC]
61735
61660
-
Thr
TGT
[ENA]
¡û
>W2110611389
JAHKPJ010000025
Gammaproteobacteria
Psychrosphaera sp. F3M07 [JAHKPJ]
15897
15822
-
Thr
TGT
[ENA]
¡û
>W2110611391
JAHKPJ010000025
Gammaproteobacteria
Psychrosphaera sp. F3M07 [JAHKPJ]
5052
4977
-
Thr
TGT
[ENA]
¡û
>W2110612351
JAHKQF010000006
Gammaproteobacteria
Alteromonas sp. C1M14 [JAHKQF]
3649
3724
+
Thr
TGT
[ENA]
¡û
>W2110612363
JAHKQF010000011
Gammaproteobacteria
Alteromonas sp. C1M14 [JAHKQF]
267694
267769
+
Thr
TGT
[ENA]
¡û
>W2110612454
JAHKQH010000036
Gammaproteobacteria
Psychrosphaera sp. B3R10 [JAHKQH]
61727
61652
-
Thr
TGT
[ENA]
¡û
>C211007626
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
4170541
4170466
-
Thr
TGT
-
¡û
>C211007635
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3584356
3584281
-
Thr
TGT
-
¡û
>C211007721
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
4057167
4057092
-
Thr
TGT
-
¡û
>C211007729
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3474319
3474244
-
Thr
TGT
-
¡û
>C211193622
CP064795
Gammaproteobacteria
Salinimonas sp. G2-b [CP064795]
443501
443576
+
Thr
TGT
-
¡û
>C211193661
CP064795
Gammaproteobacteria
Salinimonas sp. G2-b [CP064795]
3318052
3317977
-
Thr
TGT
-
¡û
>C231249137
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
821781
821856
+
Thr
TGT
-
¡û
>C231249193
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
4214902
4214827
-
Thr
TGT
-
¡û
>C231370392
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
486449
486524
+
Thr
TGT
-
¡û
>C231370427
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
3528882
3528807
-
Thr
TGT
-
¡û
>W2130025322
JAEFCD010000033
Gammaproteobacteria
Alteromonas sp. IB21 [JAEFCD]
28734
28809
+
Thr
TGT
[ENA]
¡û
>W2130025323
JAEFCD010000036
Gammaproteobacteria
Alteromonas sp. IB21 [JAEFCD]
480
405
-
Thr
TGT
[ENA]
¡û
>C241280857
CP128185
Gammaproteobacteria
Aliiglaciecola sp. LCG003 [CP128185]
3700143
3700068
-
Thr
TGT
-
¡û
>C241329350
CP136708
Gammaproteobacteria
Alteromonas sp. CI.11.F.A3 [CP136708]
779264
779339
+
Thr
TGT
-
¡û
>W2130039150
JAHZSS010000018
Gammaproteobacteria
Neiella sp. 126 [JAHZSS]
73213
73138
-
Thr
TGT
[ENA]
¡û
>WENV052151
AACY023007836
Marine microbial communities from Global Ocean Sampling (GOS)
239
162
-
Thr
TGT
[ENA]
>C161049649
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
3971155
3971230
+
Thr
TGT
-
¡û
>C161049666
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
2070512
2070437
-
Thr
TGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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