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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261988 (32 seq.)
>W1711269026
LZDN01000006
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
62849
62774
-
His
GTG
[ENA]
¡û
>W131223267
AUBY01000009
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
187847
187922
+
His
GTG
[ENA]
¡û
>W131223296
AUBY01000040
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
9960
10035
+
His
GTG
[ENA]
¡û
>W131223303
AUBZ01000002
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
185721
185796
+
His
GTG
[ENA]
¡û
>W131223336
AUBZ01000027
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
67696
67771
+
His
GTG
[ENA]
¡û
>W131241475
BARX01000001
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
120833
120758
-
His
GTG
[ENA]
¡û
>W131241479
BARX01000004
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
180485
180410
-
His
GTG
[ENA]
¡û
>W1711799927
MXAP01000029
Gammaproteobacteria
Moraxella equi [MXAP]
49123
49048
-
His
GTG
[ENA]
¡û
>WENV170023762
BCQL01002749
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
653
578
-
His
GTG
[ENA]
¡û
>W1910178264
BJEQ01000003
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
27933
27858
-
His
GTG
[ENA]
¡û
>W1910178301
BJEQ01000029
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
21262
21337
+
His
GTG
[ENA]
¡û
>W2010091603
BJEQ01000003
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
27933
27858
-
His
GTG
[ENA]
¡û
>W2010091640
BJEQ01000029
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
21262
21337
+
His
GTG
[ENA]
¡û
>W2011858163
UNRE01000006
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
284560
284635
+
His
GTG
[ENA]
¡û
>W2011858196
UNRE01000012
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
21578
21653
+
His
GTG
[ENA]
¡û
>W2012330200
WHRY01000005
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
117455
117380
-
His
GTG
[ENA]
¡û
>W2012330220
WHRY01000011
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
21707
21782
+
His
GTG
[ENA]
¡û
>W2110016255
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
1846410
1846335
-
His
GTG
[ENA]
¡û
>W2110016275
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
551150
551075
-
His
GTG
[ENA]
¡û
>W2110020808
BMDY01000018
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
20673
20598
-
His
GTG
[ENA]
¡û
>W2110020812
BMDY01000019
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
21822
21897
+
His
GTG
[ENA]
¡û
>W2110314745
JADFCA010000027
Gammaproteobacteria
Moraxella sp. K1630 [JADFCA]
29738
29813
+
His
GTG
[ENA]
¡û
>C211007575
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
313534
313609
+
His
GTG
-
¡û
>C211007595
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
1740755
1740830
+
His
GTG
-
¡û
>C211007670
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
306629
306704
+
His
GTG
-
¡û
>C211007690
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
1747982
1748057
+
His
GTG
-
¡û
>C231249133
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
306747
306822
+
His
GTG
-
¡û
>C231249154
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
2198713
2198788
+
His
GTG
-
¡û
>C231370390
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
329052
329127
+
His
GTG
-
¡û
>C231370441
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
2804225
2804150
-
His
GTG
-
¡û
>C161049612
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
30775
30850
+
His
GTG
-
¡û
>C161049639
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
3082651
3082726
+
His
GTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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