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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261999 (51 seq.)
>W131027614
AJAM01000003
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
5175
5101
-
Lys
CTT
[ENA]
¡û
>W131201125
ASVX01000001
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
802735
802661
-
Lys
CTT
[ENA]
¡û
>W131209114
ATIM01000056
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
27833
27759
-
Lys
CTT
[ENA]
¡û
>W1711460442
MJEF01000030
Bacillota
Enterococcus casseliflavus [MJEF]
34185
34259
+
Lys
CTT
[ENA]
¡û
>W1712069342
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
88336
88262
-
Lys
CTT
[ENA]
¡û
>W1712097151
NIBP01000001
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
1505205
1505279
+
Lys
CTT
[ENA]
¡û
>WENV180167916
OAVP01001059
[OAVP] human gut metagenome; faeces
643
569
-
Lys
CTT
[ENA]
¡û
>WENV180457786
OBXV01000049
[OBXV] human gut metagenome; faeces
164549
164623
+
Lys
CTT
[ENA]
¡û
>WENV182601815
OJJJ01000757
[OJJJ] metagenome; faeces
6038
6112
+
Lys
CTT
[ENA]
¡û
>WENV170001728
AGFS01135526
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
77
3
-
Lys
CTT
[ENA]
¡û
>WENV170005170
AKZA01003588
[AKZA] insect gut metagenome;
98
24
-
Lys
CTT
[ENA]
¡û
>WENV170657503
JTFO01171222
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
18
92
+
Lys
CTT
[ENA]
¡û
>C181083356
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
2246446
2246372
-
Lys
CTT
-
¡û
>W1910181703
BJMG01000007
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
51744
51670
-
Lys
CTT
[ENA]
¡û
>W2010095352
BJMG01000007
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
51744
51670
-
Lys
CTT
[ENA]
¡û
>W2010202231
CABGRH010000001
Bacillota
Enterococcus casseliflavus 4928STDY7071540 [CABGRH]
42918
42844
-
Lys
CTT
[ENA]
¡û
>W2010203159
CABGTX010000007
Bacillota
Enterococcus casseliflavus 4928STDY7071625 [CABGTX]
55178
55252
+
Lys
CTT
[ENA]
¡û
>W2010207715
CABHBK010000001
Bacillota
Enterococcus casseliflavus 4928STDY7071761 [CABHBK]
191441
191367
-
Lys
CTT
[ENA]
¡û
>W2010208427
CABHDD010000001
Bacillota
Enterococcus casseliflavus 4928STDY7387722 [CABHDD]
629129
629203
+
Lys
CTT
[ENA]
¡û
>W2011535560
SCHU01000062
Bacillota
Enterococcus casseliflavus L5-B [SCHU]
15776
15848
+
Lys
CTT
[ENA]
¡û
>W2011535615
SCHW01000022
Bacillota
Enterococcus casseliflavus L4-B [SCHW]
34134
34206
+
Lys
CTT
[ENA]
¡û
>W2011825848
UGIQ01000001
Bacillota
Enterococcus casseliflavus NCTC12362 [UGIQ]
1063634
1063560
-
Lys
CTT
[ENA]
¡û
>W2011997699
VEDP01000001
Bacillota
Enterococcus casseliflavus DE0201 [VEDP]
40395
40321
-
Lys
CTT
[ENA]
¡û
>W2012030352
VHIL01000006
Bacillota
Enterococcus sp. OL5 [VHIL]
170376
170450
+
Lys
CTT
[ENA]
¡û
>W2012196406
VWOB01000007
Bacillota
Enterococcus casseliflavus 10-1 [VWOB]
116432
116506
+
Lys
CTT
[ENA]
¡û
>W2110144137
JAAMRU010000024
Bacillota
Enterococcus casseliflavus 13D1-56 [JAAMRU]
220
146
-
Lys
CTT
[ENA]
¡û
>W2110144181
JAAMSE010000016
Bacillota
Enterococcus casseliflavus 5D2-51 [JAAMSE]
2413
2339
-
Lys
CTT
[ENA]
¡û
>W2110144305
JAAMSG010000016
Bacillota
Enterococcus casseliflavus 5D2-10 [JAAMSG]
2413
2339
-
Lys
CTT
[ENA]
¡û
>W2110144336
JAAMSH010000006
Bacillota
Enterococcus casseliflavus 4A1-53 [JAAMSH]
3395
3321
-
Lys
CTT
[ENA]
¡û
>W2110144432
JAAMSJ010000005
Bacillota
Enterococcus casseliflavus 4A2-6 [JAAMSJ]
212748
212674
-
Lys
CTT
[ENA]
¡û
>W2110144506
JAAMSL010000018
Bacillota
Enterococcus casseliflavus 3C1-8 [JAAMSL]
2413
2339
-
Lys
CTT
[ENA]
¡û
>W2110154702
JAAOLS010000005
Bacillota
Enterococcus casseliflavus 18C-21 [JAAOLS]
52881
52807
-
Lys
CTT
[ENA]
¡û
>W2110171198
JABBNP010000009
Bacillota
Enterococcus casseliflavus KresVRE0012 [JABBNP]
1854
1780
-
Lys
CTT
[ENA]
¡û
>W2110331263
JADKZT010000001
Bacillota
Enterococcus casseliflavus DY31 [JADKZT]
1077544
1077618
+
Lys
CTT
[ENA]
¡û
>W2110691543
JAIPTN010000032
Bacillota
Enterococcus casseliflavus V311 [JAIPTN]
3747
3673
-
Lys
CTT
[ENA]
¡û
>W2110691604
JAIPTO010000032
Bacillota
Enterococcus casseliflavus V308 [JAIPTO]
13021
13095
+
Lys
CTT
[ENA]
¡û
>C211220421
CP066024
Bacillota
Enterococcus casseliflavus FDAARGOS_998 [CP066024]
1932974
1932900
-
Lys
CTT
-
¡û
>C231063979
CP053180
Bacillota
Enterococcus casseliflavus SP11 [CP053180]
823306
823232
-
Lys
CTT
-
¡û
>C231220850
CP086066
Bacillota
Enterococcus casseliflavus ECB140 [CP086066]
966204
966130
-
Lys
CTT
-
¡û
>W2110768536
SIYO01000019
Bacillota
Enterococcus casseliflavus 2UPD1 [SIYO]
61317
61391
+
Lys
CTT
[ENA]
¡û
>W2110768772
SIYZ01000003
Bacillota
Enterococcus casseliflavus 3MPK3 [SIYZ]
54830
54904
+
Lys
CTT
[ENA]
¡û
>W2110768839
SIZA01000010
Bacillota
Enterococcus casseliflavus 3MPK4 [SIZA]
54835
54909
+
Lys
CTT
[ENA]
¡û
>W2110771143
VCYB01000005
Bacillota
Enterococcus casseliflavus R95 [VCYB]
69182
69256
+
Lys
CTT
[ENA]
¡û
>C231572962
CP116026
Bacillota
Enterococcus casseliflavus CQFYY22-063 [CP116026]
774824
774750
-
Lys
CTT
-
¡û
>W2110775808
VODM01000006
Bacillota
Enterococcus casseliflavus J2 [VODM]
210031
210105
+
Lys
CTT
[ENA]
¡û
>W2110775887
VODN01000013
Bacillota
Enterococcus casseliflavus J4 [VODN]
39938
39864
-
Lys
CTT
[ENA]
¡û
>C241105884
CP046123
Bacillota
Enterococcus casseliflavus EC291 [CP046123]
742094
742020
-
Lys
CTT
-
¡û
>C241366456
CP141640
Bacillota
Enterococcus casseliflavus Dec0527 [CP141640]
814593
814519
-
Lys
CTT
-
¡û
>WENV11101800
AGFS01135526
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
77
3
-
Lys
CTT
[ENA]
¡û
>W1710520618
FNFS01000014
Bacillota
Enterococcus casseliflavus [FNFS]
91502
91576
+
Lys
CTT
[ENA]
¡û
>W1710559381
FOMP01000001
Bacillota
Enterococcus casseliflavus [FOMP]
647555
647629
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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