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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262283 (54 seq.)
>W1710863519
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
450929
451004
+
Lys
CTT
[ENA]
¡û
>W1710877336
LMQA01000001
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
650376
650451
+
Lys
CTT
[ENA]
¡û
>W1711138007
LVCF01000007
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
126021
125948
-
Lys
CTT
[ENA]
¡û
>W1711793215
MWLL01000073
Actinomycetota
Kineosporia sp. R_H_3 [MWLL]
23204
23129
-
Lys
CTT
[ENA]
¡û
>W1711793322
MWLN01000162
Actinomycetota
Kineosporia sp. A_224 A 224 [MWLN]
31462
31387
-
Lys
CTT
[ENA]
¡û
>W131087834
AODO01000001
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
252504
252429
-
Lys
CTT
[ENA]
¡û
>W131087835
AODO01000001
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
252358
252283
-
Lys
CTT
[ENA]
¡û
>WENV180018008
FSXZ01001682
[FSXZ] metagenome; soil
3249
3174
-
Lys
CTT
[ENA]
¢þ
>WENV180018029
FSXZ01002337
[FSXZ] metagenome; soil
255
328
+
Lys
CTT
[ENA]
¢þ
>WENV180034877
FTKS01001183
[FTKS] metagenome; soil
459
534
+
Lys
CTT
[ENA]
¢þ
>WENV180034905
FTKS01032302
[FTKS] metagenome; soil
300
227
-
Lys
CTT
[ENA]
¢þ
>WENV180034941
FTKS01123294
[FTKS] metagenome; soil
394
468
+
Lys
CTT
[ENA]
¢þ
>WENV180289416
OBIS01025997
[OBIS] soil metagenome; Alaskan Permafrost
199
124
-
Lys
CTT
[ENA]
¢þ
>w003993
AAEF02000026
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
24064
24141
+
Lys
CTT
[ENA]
¡û
>WENV181192378
OEPS010609097
[OEPS] soil metagenome; soil
91
164
+
Lys
CTT
[ENA]
¢þ
>W141200996
AZAN01000002
Actinomycetota
Actinospica robiniae DSM 44927 [AZAN]
5076397
5076472
+
Lys
CTT
[ENA]
¡û
>W141201008
AZAN01000002
Actinomycetota
Actinospica robiniae DSM 44927 [AZAN]
6218020
6218093
+
Lys
CTT
[ENA]
¡û
>C08005717
CP000750
Actinomycetota
Kineococcus radiotolerans SRS30216 = ATCC BAA-149 [CP000750]
3201775
3201703
-
Lys
CTT
[Ensembl]
¡û
>W141220292
AZXR01001501
Actinomycetota
Promicromonospora kroppenstedtii DSM 19349 [AZXR]
4799
4874
+
Lys
CTT
[ENA]
¡û
>WENV183660766
ORJL010051253
[ORJL] groundwater metagenome; groundwater
1905
1832
-
Lys
CTT
[ENA]
¢þ
>WENV183675359
ORJL011500556
[ORJL] groundwater metagenome; groundwater
886
813
-
Lys
CTT
[ENA]
¢þ
>WENV183693049
ORMF012012825
[ORMF] groundwater metagenome; groundwater
162
89
-
Lys
CTT
[ENA]
¢þ
>WENV170690952
LFRM01372590
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4181
4106
-
Lys
CTT
[ENA]
¢þ
>WENV170961683
MLJW01000516
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1635
1708
+
Lys
CTT
[ENA]
¢þ
>C181212448
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
956839
956914
+
Lys
CTT
-
¡û
>C181212449
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
957054
957129
+
Lys
CTT
-
¡û
>C191120856
CP034170
Actinomycetota
Nakamurella antarctica S14-144 [CP034170]
2154875
2154950
+
Lys
CTT
-
¡û
>C191143968
CP035493
Actinomycetota
Xylanimonas protaetiae FW10M-9 [CP035493]
2319234
2319309
+
Lys
CTT
-
¡û
>C191143969
CP035493
Actinomycetota
Xylanimonas protaetiae FW10M-9 [CP035493]
2327108
2327182
+
Lys
CTT
-
¡û
>W141766887
JOEG01000030
Actinomycetota
Actinocatenispora sera [JOEG]
1075
1000
-
Lys
CTT
[ENA]
¡û
>W141773325
JOIJ01000008
Actinomycetota
Prauserella rugosa [JOIJ]
197138
197065
-
Lys
CTT
[ENA]
¡û
>W1911765401
QXCQ01000091
Actinomycetota
Nakamurella silvestris DSM 102309 [QXCQ]
45555
45482
-
Lys
CTT
[ENA]
¡û
>W1810296266
PTJD01000018
Actinomycetota
Kineococcus xinjiangensis DSM 22857 [PTJD]
19062
19135
+
Lys
CTT
[ENA]
¡û
>W1810594909
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
648501
648574
+
Lys
CTT
[ENA]
¡û
>C10114218
CP001821
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [CP001821]
1148148
1148223
+
Lys
CTT
[Ensembl]
¡û
>C10114219
CP001821
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [CP001821]
1152495
1152570
+
Lys
CTT
[Ensembl]
¡û
>W1511402122
JTJI01000008
Actinomycetota
Prauserella sp. Am3 [JTJI]
273167
273094
-
Lys
CTT
[ENA]
¡û
>W1511585634
LAYS01000036
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
2129
2054
-
Lys
CTT
[ENA]
¡û
>W1511687655
LFVR01000280
Actinomycetota
Streptomyces regensis NRRL B-11479 [LFVR]
8291
8218
-
Lys
CTT
[ENA]
¡û
>W121125273
BAFX01000046
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
47720
47645
-
Lys
CTT
[ENA]
¡û
>W1610069043
BCRU01000003
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
83172
83247
+
Lys
CTT
[ENA]
¡û
>W1610078396
BDAW01000014
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
6391
6316
-
Lys
CTT
[ENA]
¡û
>W1610080155
BDCE01000003
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
31464
31389
-
Lys
CTT
[ENA]
¡û
>W1610080181
BDCE01000047
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
12519
12446
-
Lys
CTT
[ENA]
¡û
>W1610725865
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
450929
451004
+
Lys
CTT
[ENA]
¡û
>W1610739682
LMQA01000001
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
650376
650451
+
Lys
CTT
[ENA]
¡û
>W1610949093
LVCF01000007
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
126021
125948
-
Lys
CTT
[ENA]
¡û
>W1710066416
BCRU01000003
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 = NBRC 103563 [BCRU]
83172
83247
+
Lys
CTT
[ENA]
¡û
>W1710076955
BDAW01000014
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
6391
6316
-
Lys
CTT
[ENA]
¡û
>W1710078714
BDCE01000003
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
31464
31389
-
Lys
CTT
[ENA]
¡û
>W1710078740
BDCE01000047
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
12519
12446
-
Lys
CTT
[ENA]
¡û
>W1710515973
FNCF01000004
Actinomycetota
Klenkia brasiliensis [FNCF]
54624
54549
-
Lys
CTT
[ENA]
¡û
>W1710589944
FRAP01000003
Actinomycetota
Pseudonocardia thermophila [FRAP]
86868
86793
-
Lys
CTT
[ENA]
¡û
>W1710592782
FRCS01000004
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
410596
410669
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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