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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262283 (91 seq.)
>WENV180237618
OBCY01014803
[OBCY] human gut metagenome; human gut
243
318
+
Thr
CGT
[ENA]
¡û
>WENV180319681
OBKN01005685
[OBKN] human gut metagenome; human gut
687
762
+
Thr
CGT
[ENA]
¡û
>WENV180469519
OBYM01004174
[OBYM] human gut metagenome; faeces
3833
3908
+
Thr
CGT
[ENA]
¡û
>WENV181118055
OEFH01004242
[OEFH] human metagenome; G_DNA_Stool
4264
4339
+
Thr
CGT
[ENA]
¡û
>WENV181199829
OERI01008659
[OERI] metagenome; Caecal content
44
119
+
Thr
CGT
[ENA]
¡û
>WENV181204205
OERY01001372
[OERY] metagenome; Caecal content
542
467
-
Thr
CGT
[ENA]
¡û
>WENV181331363
OFLZ01002341
[OFLZ] human gut metagenome; human gut
100
25
-
Thr
CGT
[ENA]
¡û
>WENV181334465
OFMB01070699
[OFMB] human gut metagenome; human gut
75
150
+
Thr
CGT
[ENA]
¡û
>WENV181338598
OFMF01006286
[OFMF] human gut metagenome; human gut
3809
3734
-
Thr
CGT
[ENA]
¡û
>WENV181340231
OFMG01036918
[OFMG] human gut metagenome; human gut
497
422
-
Thr
CGT
[ENA]
¡û
>WENV181342229
OFMI01003509
[OFMI] human gut metagenome; human gut
132
207
+
Thr
CGT
[ENA]
¡û
>WENV181345115
OFMK01028100
[OFMK] human gut metagenome; human gut
509
434
-
Thr
CGT
[ENA]
¡û
>WENV181345229
OFML01000004
[OFML] human gut metagenome; human gut
9094
9169
+
Thr
CGT
[ENA]
¡û
>WENV181347811
OFMM01036091
[OFMM] human gut metagenome; human gut
805
730
-
Thr
CGT
[ENA]
¡û
>WENV181349066
OFMN01011171
[OFMN] human gut metagenome; human gut
1098
1173
+
Thr
CGT
[ENA]
¡û
>WENV181350191
OFMO01003928
[OFMO] human gut metagenome; human gut
1957
2032
+
Thr
CGT
[ENA]
¡û
>WENV181354650
OFMS01038987
[OFMS] human gut metagenome; human gut
534
609
+
Thr
CGT
[ENA]
¡û
>WENV181356960
OFMU01002866
[OFMU] human gut metagenome; human gut
9072
9147
+
Thr
CGT
[ENA]
¡û
>WENV181360355
OFMX01010249
[OFMX] human gut metagenome; human gut
2551
2623
+
Thr
CGT
[ENA]
¡û
>WENV181362557
OFOK01005686
[OFOK] human gut metagenome; human gut
4082
4157
+
Thr
CGT
[ENA]
¡û
>WENV181396563
OFSC01004807
[OFSC] human gut metagenome; human gut
2812
2737
-
Thr
CGT
[ENA]
¡û
>WENV181508044
OGGQ01000056
[OGGQ] metagenome; Human gut stool
84555
84630
+
Thr
CGT
[ENA]
¡û
>WENV181564794
OGJH01032293
[OGJH] metagenome; Human gut stool
427
502
+
Thr
CGT
[ENA]
¡û
>WENV181723466
OGPW01006741
[OGPW] human gut metagenome; faeces
4255
4330
+
Thr
CGT
[ENA]
¡û
>WENV181787383
OGRN01032544
[OGRN] human gut metagenome; faeces
896
971
+
Thr
CGT
[ENA]
¡û
>WENV181865420
OGWU01025405
[OGWU] human gut metagenome; faeces
1428
1353
-
Thr
CGT
[ENA]
¡û
>WENV181871098
OGWZ01000001
[OGWZ] human gut metagenome; faeces
2499
2424
-
Thr
CGT
[ENA]
¡û
>WENV181886608
OGXK01047141
[OGXK] human gut metagenome; faeces
730
805
+
Thr
CGT
[ENA]
¡û
>WENV181891014
OGXO01003787
[OGXO] human gut metagenome; faeces
2304
2229
-
Thr
CGT
[ENA]
¡û
>WENV181898912
OGXT01026153
[OGXT] human gut metagenome; faeces
1083
1008
-
Thr
CGT
[ENA]
¡û
>WENV181904914
OGXX01048542
[OGXX] human gut metagenome; faeces
537
612
+
Thr
CGT
[ENA]
¡û
>WENV181913251
OGYE01004572
[OGYE] human gut metagenome; faeces
737
812
+
Thr
CGT
[ENA]
¡û
>WENV181915579
OGYF01010149
[OGYF] human gut metagenome; faeces
4219
4144
-
Thr
CGT
[ENA]
¡û
>WENV181930240
OGYP01001325
[OGYP] human gut metagenome; faeces
5349
5274
-
Thr
CGT
[ENA]
¡û
>WENV181938650
OGYW01023605
[OGYW] human gut metagenome; faeces
230
155
-
Thr
CGT
[ENA]
¡û
>WENV181943400
OGYZ01010168
[OGYZ] human gut metagenome; faeces
3434
3509
+
Thr
CGT
[ENA]
¡û
>WENV181952627
OGZI01000551
[OGZI] human gut metagenome; faeces
38954
38879
-
Thr
CGT
[ENA]
¡û
>WENV181962037
OGZO01050806
[OGZO] human gut metagenome; faeces
808
733
-
Thr
CGT
[ENA]
¡û
>WENV181992501
OHAQ01077928
[OHAQ] human gut metagenome; faeces
585
510
-
Thr
CGT
[ENA]
¡û
>WENV181996595
OHAU01000152
[OHAU] human gut metagenome; faeces
28226
28151
-
Thr
CGT
[ENA]
¡û
>WENV182005816
OHBE01020357
[OHBE] human gut metagenome; faeces
8
83
+
Thr
CGT
[ENA]
¡û
>WENV182009628
OHBJ01026628
[OHBJ] human gut metagenome; faeces
944
869
-
Thr
CGT
[ENA]
¡û
>WENV182010991
OHBL01023899
[OHBL] human gut metagenome; feces
309
384
+
Thr
CGT
[ENA]
¡û
>WENV182025003
OHCH01020939
[OHCH] human gut metagenome; feces
576
501
-
Thr
CGT
[ENA]
¡û
>WENV182030553
OHCR01023088
[OHCR] human gut metagenome; feces
45
120
+
Thr
CGT
[ENA]
¡û
>WENV182040977
OHDH01043755
[OHDH] human gut metagenome; feces
265
190
-
Thr
CGT
[ENA]
¡û
>WENV182104956
OHIB01022440
[OHIB] human gut metagenome; feces
91
16
-
Thr
CGT
[ENA]
¡û
>WENV182131624
OHKD01001560
[OHKD] human gut metagenome; feces
523
448
-
Thr
CGT
[ENA]
¡û
>WENV182154327
OHLO01047400
[OHLO] human gut metagenome; feces
420
495
+
Thr
CGT
[ENA]
¡û
>WENV182167063
OHMQ01017326
[OHMQ] human gut metagenome; feces
58
133
+
Thr
CGT
[ENA]
¡û
>WENV182182459
OHNQ01030289
[OHNQ] human gut metagenome; feces
159
234
+
Thr
CGT
[ENA]
¡û
>WENV182208543
OHPX01022404
[OHPX] human gut metagenome; feces
552
477
-
Thr
CGT
[ENA]
¡û
>WENV182210479
OHQC01032554
[OHQC] human gut metagenome; feces
31
106
+
Thr
CGT
[ENA]
¡û
>WENV182252943
OHSZ01039391
[OHSZ] human gut metagenome; feces
204
129
-
Thr
CGT
[ENA]
¡û
>WENV182277451
OHUR01003784
[OHUR] human gut metagenome; feces
2686
2611
-
Thr
CGT
[ENA]
¡û
>WENV182310670
OHXM01010646
[OHXM] human gut metagenome; feces
352
277
-
Thr
CGT
[ENA]
¡û
>WENV182377553
OIDF01035403
[OIDF] human gut metagenome; feces
353
278
-
Thr
CGT
[ENA]
¡û
>WENV182383645
OIDT01009677
[OIDT] human gut metagenome; feces
488
413
-
Thr
CGT
[ENA]
¡û
>WENV182389025
OIEC01017613
[OIEC] human gut metagenome; human gut
1051
976
-
Thr
CGT
[ENA]
¡û
>WENV182515359
OIWN01000460
[OIWN] human gut metagenome; faeces
24034
24109
+
Thr
CGT
[ENA]
¡û
>WENV182520903
OIWQ01002966
[OIWQ] human gut metagenome; faeces
3771
3696
-
Thr
CGT
[ENA]
¡û
>WENV182530868
OIWV01013279
[OIWV] human gut metagenome; faeces
2729
2654
-
Thr
CGT
[ENA]
¡û
>WENV182707882
OJOY01019943
[OJOY] human gut metagenome; stool sample
367
442
+
Thr
CGT
[ENA]
¡û
>WENV182717205
OJPK01002799
[OJPK] human gut metagenome; stool sample
536
611
+
Thr
CGT
[ENA]
¡û
>WENV182869822
OKRT01028227
[OKRT] human gut metagenome; faeces
72
-1
-
Thr
CGT
[ENA]
¡û
>WENV182874652
OKRW01020384
[OKRW] human gut metagenome; faeces
412
337
-
Thr
CGT
[ENA]
¡û
>WENV182935880
OKVA01004158
[OKVA] human gut metagenome; feces
2298
2223
-
Thr
CGT
[ENA]
¡û
>WENV183033689
OLFY01007565
[OLFY] human gut metagenome; faeces
5364
5439
+
Thr
CGT
[ENA]
¡û
>WENV183152946
OLOQ01022476
[OLOQ] human gut metagenome; faeces
199
274
+
Thr
CGT
[ENA]
¡û
>WENV183201089
OLPW01011020
[OLPW] human gut metagenome; faeces
501
426
-
Thr
CGT
[ENA]
¡û
>WENV183241323
OLRA01099315
[OLRA] human gut metagenome; faeces
545
470
-
Thr
CGT
[ENA]
¡û
>WENV183248079
OLRF01022273
[OLRF] human gut metagenome; faeces
109
184
+
Thr
CGT
[ENA]
¡û
>WENV183253267
OLRI01042542
[OLRI] human gut metagenome; faeces
226
151
-
Thr
CGT
[ENA]
¡û
>WENV183337575
OLWI01043533
[OLWI] human gut metagenome; feces
22
97
+
Thr
CGT
[ENA]
¡û
>WENV183343762
OLWP01000494
[OLWP] human gut metagenome; feces
956
1031
+
Thr
CGT
[ENA]
¡û
>WENV183354199
OLXB01019559
[OLXB] human gut metagenome; feces
504
579
+
Thr
CGT
[ENA]
¡û
>WENV183373981
OLXY01013759
[OLXY] human gut metagenome; feces
998
1073
+
Thr
CGT
[ENA]
¡û
>WENV183406250
OMAA01004728
[OMAA] human gut metagenome; feces
558
483
-
Thr
CGT
[ENA]
¡û
>WENV183484595
OMFP01000161
[OMFP] human gut metagenome; feces
34955
35030
+
Thr
CGT
[ENA]
¡û
>WENV183551979
OOBJ01000344
[OOBJ] human gut metagenome; human gut
39717
39792
+
Thr
CGT
[ENA]
¡û
>WENV183632792
OOIF01018626
[OOIF] human gut metagenome; human gut
608
683
+
Thr
CGT
[ENA]
¡û
>WENV183751611
PPYE01022615
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
624
699
+
Thr
CGT
[ENA]
¡û
>WENV183769814
PPYE01432366
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
104839
104764
-
Thr
CGT
[ENA]
¡û
>WENV183774329
PPYF01032879
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3527
3602
+
Thr
CGT
[ENA]
¡û
>WENV183775868
PPYF01072826
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2876
2951
+
Thr
CGT
[ENA]
¡û
>WENV183777936
PPYF01114110
[PPYF] human gut metagenome; stool from patient with Crohn's disease
31738
31813
+
Thr
CGT
[ENA]
¡û
>WENV183778762
PPYF01129270
[PPYF] human gut metagenome; stool from patient with Crohn's disease
34299
34374
+
Thr
CGT
[ENA]
¡û
>WENV183791663
PPYF01438066
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10247
10172
-
Thr
CGT
[ENA]
¡û
>WENV170075658
CDZT01041899
[CDZT] gut metagenome; human stools
76
1
-
Thr
CGT
[ENA]
¡û
>W1910343548
FTRU01000008
Bacillota
Negativibacillus massiliensis Marseille-P3213 [FTRU]
708884
708809
-
Thr
CGT
[ENA]
¡û
>W2010400178
FTRU01000008
Bacillota
Negativibacillus massiliensis Marseille-P3213 [FTRU]
708884
708809
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK