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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262365 (56 seq.)
>W1711082123
LSTQ01000004
Actinomycetota
Corynebacterium stationis [LSTQ]
4448
4373
-
Arg
CCT
[ENA]
¡û
>W1711377187
MDYT01000017
Actinomycetota
Corynebacterium diphtheriae [MDYT]
306855
306928
+
Arg
CCT
[ENA]
¡û
>W1711456376
MJAR01000027
Actinomycetota
Corynebacterium diphtheriae [MJAR]
306284
306357
+
Arg
CCT
[ENA]
¡û
>W1711508407
MKYM01000001
Actinomycetota
Corynebacterium diphtheriae [MKYM]
372600
372673
+
Arg
CCT
[ENA]
¡û
>W1711510731
MLBI01000005
Actinomycetota
Corynebacterium diphtheriae [MLBI]
30654
30581
-
Arg
CCT
[ENA]
¡û
>W1711687061
MSBT01000001
Actinomycetota
Corynebacterium diphtheriae [MSBT]
30841
30768
-
Arg
CCT
[ENA]
¡û
>W1711707988
MSSZ01000002
Actinomycetota
Corynebacterium diphtheriae [MSSZ]
141931
142004
+
Arg
CCT
[ENA]
¡û
>W1711708029
MSTA01000001
Actinomycetota
Corynebacterium diphtheriae [MSTA]
248561
248634
+
Arg
CCT
[ENA]
¡û
>W1711980076
NDHO01000001
Actinomycetota
Corynebacterium diphtheriae [NDHO]
372511
372584
+
Arg
CCT
[ENA]
¡û
>C171001830
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
2076017
2076090
+
Arg
CCT
-
¡û
>C171002136
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
2000426
2000501
+
Arg
CCT
-
¡û
>C171098513
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
2162604
2162677
+
Arg
CCT
-
¡û
>C171101842
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
1886868
1886943
+
Arg
CCT
-
¡û
>WENV180016661
FSVS01000332
[FSVS] metagenome; soil
4982
5055
+
Arg
CCT
[ENA]
¡û
>WENV180028800
FTJH01000810
[FTJH] metagenome; soil
902
829
-
Arg
CCT
[ENA]
¡û
>WENV183511806
OMJG01005115
[OMJG] food metagenome; Cotija cheese
137
64
-
Arg
CCT
[ENA]
¡û
>C181182609
CP029644
Actinomycetota
Corynebacterium diphtheriae BQ11 [CP029644]
865394
865321
-
Arg
CCT
-
¡û
>W141766944
JOEH01000024
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
146585
146658
+
Arg
CCT
[ENA]
¡û
>W1910442379
FWFE01000052
Actinomycetota
Corynebacterium sp. JB4 [FWFE]
51007
51080
+
Arg
CCT
[ENA]
¡û
>W1810326715
PUGE01000002
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
593
518
-
Arg
CCT
[ENA]
¡û
>C151005934
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
2216903
2216978
+
Arg
CCT
[Ensembl]
¡û
>W2010350015
CADDAB010000013
Actinomycetota
Corynebacterium diphtheriae [CADDAB]
30450
30377
-
Arg
CCT
[ENA]
¡û
>W2010350224
CADDAF010000016
Actinomycetota
Corynebacterium diphtheriae [CADDAF]
18092
18019
-
Arg
CCT
[ENA]
¡û
>W2010350973
CADDAT010000016
Actinomycetota
Corynebacterium diphtheriae [CADDAT]
18042
17969
-
Arg
CCT
[ENA]
¡û
>W2010351082
CADDAV010000014
Actinomycetota
Corynebacterium diphtheriae [CADDAV]
18042
17969
-
Arg
CCT
[ENA]
¡û
>W2010351131
CADDAW010000013
Actinomycetota
Corynebacterium diphtheriae [CADDAW]
28057
27984
-
Arg
CCT
[ENA]
¡û
>W2010351292
CADDAZ010000016
Actinomycetota
Corynebacterium diphtheriae [CADDAZ]
32608
32535
-
Arg
CCT
[ENA]
¡û
>W2010352763
CADDCB010000017
Actinomycetota
Corynebacterium diphtheriae [CADDCB]
30499
30426
-
Arg
CCT
[ENA]
¡û
>W2010352978
CADDCF010000011
Actinomycetota
Corynebacterium diphtheriae [CADDCF]
30415
30342
-
Arg
CCT
[ENA]
¡û
>W2010353081
CADDCH010000020
Actinomycetota
Corynebacterium diphtheriae [CADDCH]
35451
35378
-
Arg
CCT
[ENA]
¡û
>W2010353984
CADDCY010000014
Actinomycetota
Corynebacterium diphtheriae [CADDCY]
7804
7731
-
Arg
CCT
[ENA]
¡û
>W2010354036
CADDCZ010000012
Actinomycetota
Corynebacterium diphtheriae [CADDCZ]
30659
30586
-
Arg
CCT
[ENA]
¡û
>W2010354406
CADDDG010000016
Actinomycetota
Corynebacterium diphtheriae [CADDDG]
30809
30736
-
Arg
CCT
[ENA]
¡û
>W2010354713
CADDDM010000013
Actinomycetota
Corynebacterium diphtheriae [CADDDM]
7804
7731
-
Arg
CCT
[ENA]
¡û
>W2010355097
CADDDT010000018
Actinomycetota
Corynebacterium diphtheriae [CADDDT]
30762
30689
-
Arg
CCT
[ENA]
¡û
>W2010356426
CADDES010000008
Actinomycetota
Corynebacterium diphtheriae [CADDES]
30456
30383
-
Arg
CCT
[ENA]
¡û
>W2010357753
CADDFR010000016
Actinomycetota
Corynebacterium diphtheriae [CADDFR]
30494
30421
-
Arg
CCT
[ENA]
¡û
>W2010358288
CADDGB010000008
Actinomycetota
Corynebacterium diphtheriae [CADDGB]
30103
30030
-
Arg
CCT
[ENA]
¡û
>W2010359640
CADDHA010000012
Actinomycetota
Corynebacterium diphtheriae [CADDHA]
30102
30029
-
Arg
CCT
[ENA]
¡û
>W2010360019
CADDHH010000016
Actinomycetota
Corynebacterium diphtheriae [CADDHH]
30299
30226
-
Arg
CCT
[ENA]
¡û
>W2010405743
FWFE01000052
Actinomycetota
Corynebacterium sp. JB4 [FWFE]
51007
51080
+
Arg
CCT
[ENA]
¡û
>W2011395619
RCEU01000018
Actinomycetota
Corynebacterium diphtheriae WD716 [RCEU]
30566
30493
-
Arg
CCT
[ENA]
¡û
>W2011395768
RCEX01000020
Actinomycetota
Corynebacterium diphtheriae WD127 [RCEX]
18063
17990
-
Arg
CCT
[ENA]
¡û
>W2011434111
RJKW01000001
Actinomycetota
Streptomyces sp. 844.5 [RJKW]
3634659
3634586
-
Arg
CCT
[ENA]
¡û
>W2011655034
SOBN01000001
Actinomycetota
Streptomyces sp. 846.5 [SOBN]
4879176
4879249
+
Arg
CCT
[ENA]
¡û
>W2110187538
JABUYG010000025
Actinomycetota
Corynebacterium casei FME59 [JABUYG]
9666
9739
+
Arg
CCT
[ENA]
¡û
>C201308409
LR698967
Actinomycetota
Corynebacterium ammoniagenes [LR698967]
2076017
2076090
+
Arg
CCT
-
¡û
>W1510014003
BBPM01000019
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
24822
24895
+
Arg
CCT
[ENA]
¡û
>W10116354
ADNS01000004
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
169741
169814
+
Arg
CCT
[ENA]
¡û
>W2310016350
BQKK01000002
Actinomycetota
Corynebacterium ammoniagenes T-723 [BQKK]
203
130
-
Arg
CCT
[ENA]
¡û
>W11121023
ADNS01000004
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
169741
169814
+
Arg
CCT
[ENA]
¡û
>C121008248
CP003206
Actinomycetota
Corynebacterium diphtheriae 31A [CP003206]
824760
824687
-
Arg
CCT
[Ensembl]
¡û
>C121008348
CP003208
Actinomycetota
Corynebacterium diphtheriae INCA 402 [CP003208]
741608
741535
-
Arg
CCT
[Ensembl]
¡û
>C161070424
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
2064204
2064279
+
Arg
CCT
[Ensembl]
¡û
>W121127405
CAFW01000081
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
30335
30260
-
Arg
CCT
[ENA]
¡û
>W1610920908
LSTQ01000004
Actinomycetota
Corynebacterium stationis [LSTQ]
4448
4373
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK