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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262385 (122 seq.)
>W1710860469
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
225537
225612
+
Lys
TTT
[ENA]
¡û
>W1710864549
LMFY01000002
Actinomycetota
Microbacterium sp. Root553 [LMFY]
242314
242239
-
Lys
TTT
[ENA]
¡û
>W1710869864
LMKB01000001
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
129165
129240
+
Lys
TTT
[ENA]
¡û
>W1710871379
LMLG01000006
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
736972
736897
-
Lys
TTT
[ENA]
¡û
>W1710872736
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
2217221
2217296
+
Lys
TTT
[ENA]
¡û
>W1710875119
LMOD01000003
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
332961
333036
+
Lys
TTT
[ENA]
¡û
>W1710876070
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
737654
737727
+
Lys
TTT
[ENA]
¡û
>W1710876900
LMPQ01000010
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
150510
150585
+
Lys
TTT
[ENA]
¡û
>W1710878117
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
2216479
2216554
+
Lys
TTT
[ENA]
¡û
>W1710881102
LMSV01000001
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
1356604
1356529
-
Lys
TTT
[ENA]
¡û
>W1711074813
LSJW01000149
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
64195
64120
-
Lys
TTT
[ENA]
¡û
>W131224977
AUDF01000002
Actinomycetota
Rathayibacter toxicus DSM 7488 [AUDF]
139915
139990
+
Lys
TTT
[ENA]
¡û
>W1711461357
MJGS01000012
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
477108
477033
-
Lys
TTT
[ENA]
¡û
>W1711589062
MODW01000003
Actinomycetota
Microbacterium sp. LCT-H2 [MODW]
99605
99680
+
Lys
TTT
[ENA]
¡û
>W1711667020
MRDE01000026
Actinomycetota
Tersicoccus phoenicis [MRDE]
82348
82423
+
Lys
TTT
[ENA]
¡û
>WENV010831
AACY020293581
Marine microbial communities from Global Ocean Sampling (GOS)
1347
1422
+
Lys
TTT
[ENA]
>WENV010856
AACY020294261
Marine microbial communities from Global Ocean Sampling (GOS)
317
392
+
Lys
TTT
[ENA]
>W1711719319
MTIC01000005
Actinomycetota
Sinomonas mesophila [MTIC]
370437
370512
+
Lys
TTT
[ENA]
¡û
>WENV010892
AACY020295608
Marine microbial communities from Global Ocean Sampling (GOS)
1087
1162
+
Lys
TTT
[ENA]
>WENV010906
AACY020295931
Marine microbial communities from Global Ocean Sampling (GOS)
1716
1791
+
Lys
TTT
[ENA]
>W1711963127
NCTV01000030
Actinomycetota
Microbacterium sp. LEMMJ01 [NCTV]
225986
226061
+
Lys
TTT
[ENA]
¡û
>WENV011237
AACY020306358
Marine microbial communities from Global Ocean Sampling (GOS)
817
742
-
Lys
TTT
[ENA]
>WENV011313
AACY020308500
Marine microbial communities from Global Ocean Sampling (GOS)
400
325
-
Lys
TTT
[ENA]
>WENV011346
AACY020309291
Marine microbial communities from Global Ocean Sampling (GOS)
303
228
-
Lys
TTT
[ENA]
>WENV019512
AACY020533556
Marine microbial communities from Global Ocean Sampling (GOS)
6723
6798
+
Lys
TTT
[ENA]
>WENV022405
AACY020647681
Marine microbial communities from Global Ocean Sampling (GOS)
392
467
+
Lys
TTT
[ENA]
>W1910498640
FXWZ01000003
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
1535783
1535709
-
Lys
TTT
[ENA]
¡û
>W1810058235
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
2116966
2116892
-
Lys
TTT
[ENA]
¡û
>W1810280764
PSWU01000004
Actinomycetota
Rathayibacter toxicus FH99 [PSWU]
356776
356702
-
Lys
TTT
[ENA]
¡û
>W1810280807
PSWV01000005
Actinomycetota
Rathayibacter toxicus FH89 [PSWV]
355926
355852
-
Lys
TTT
[ENA]
¡û
>W1810280893
PSWX01000004
Actinomycetota
Rathayibacter toxicus FH85 [PSWX]
356775
356701
-
Lys
TTT
[ENA]
¡û
>W1810280936
PSWY01000005
Actinomycetota
Rathayibacter toxicus FH82 [PSWY]
353353
353279
-
Lys
TTT
[ENA]
¡û
>W1810280979
PSWZ01000004
Actinomycetota
Rathayibacter toxicus FH81 [PSWZ]
356298
356224
-
Lys
TTT
[ENA]
¡û
>W1810281065
PSXB01000002
Actinomycetota
Rathayibacter toxicus FH183 [PSXB]
417497
417423
-
Lys
TTT
[ENA]
¡û
>W1810281120
PSXC01000005
Actinomycetota
Rathayibacter toxicus FH149 [PSXC]
355651
355577
-
Lys
TTT
[ENA]
¡û
>W1810281163
PSXD01000003
Actinomycetota
Rathayibacter toxicus FH147 [PSXD]
356775
356701
-
Lys
TTT
[ENA]
¡û
>W1810281206
PSXE01000005
Actinomycetota
Rathayibacter toxicus FH146 [PSXE]
356298
356224
-
Lys
TTT
[ENA]
¡û
>W1810281249
PSXF01000004
Actinomycetota
Rathayibacter toxicus FH145 [PSXF]
353255
353181
-
Lys
TTT
[ENA]
¡û
>W1810281335
PSXH01000003
Actinomycetota
Rathayibacter toxicus FH141 [PSXH]
356939
356865
-
Lys
TTT
[ENA]
¡û
>W1810281378
PSXI01000005
Actinomycetota
Rathayibacter toxicus FH140 [PSXI]
356280
356206
-
Lys
TTT
[ENA]
¡û
>W1810281422
PSXJ01000005
Actinomycetota
Rathayibacter toxicus FH139 [PSXJ]
355926
355852
-
Lys
TTT
[ENA]
¡û
>W1810281465
PSXK01000005
Actinomycetota
Rathayibacter toxicus FH138 [PSXK]
355661
355587
-
Lys
TTT
[ENA]
¡û
>W1810281548
PSXM01000004
Actinomycetota
Rathayibacter toxicus FH128 [PSXM]
355073
354999
-
Lys
TTT
[ENA]
¡û
>W1810281595
PSXN01000006
Actinomycetota
Rathayibacter toxicus FH100 [PSXN]
262062
261988
-
Lys
TTT
[ENA]
¡û
>W1810568800
QEES01000002
Actinomycetota
Cellulomonas sp. WB94 [QEES]
1783494
1783420
-
Lys
TTT
[ENA]
¡û
>SRA1014667
SRR023845.251124
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
21
96
+
Lys
TTT
[SRA]
>C151073265
CP010848
Actinomycetota
Rathayibacter toxicus 70137 [CP010848]
709499
709424
-
Lys
TTT
[Ensembl]
¡û
>W2010310581
CABWMD010000037
Actinomycetota
Frigoribacterium sp. 9N [CABWMD]
99854
99928
+
Lys
TTT
[ENA]
¡û
>W2010418343
FXWZ01000003
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
1535783
1535709
-
Lys
TTT
[ENA]
¡û
>W2010534205
JAAOYV010000002
Actinomycetota
Frigoribacterium endophyticum AS3.20 [JAAOYV]
750520
750593
+
Lys
TTT
[ENA]
¡û
>W2010534246
JAAOYW010000002
Actinomycetota
Frigoribacterium faeni AS3.2 [JAAOYW]
385985
386058
+
Lys
TTT
[ENA]
¡û
>W2010609702
JABMLB010000002
Actinomycetota
Frigoribacterium sp. VKM Ac-2860 [JABMLB]
939351
939277
-
Lys
TTT
[ENA]
¡û
>W2010610823
JABRPK010000002
Actinomycetota
Frigoribacterium sp. VKM Ac-2836 [JABRPK]
668948
668874
-
Lys
TTT
[ENA]
¡û
>W2010691908
JACGWX010000004
Actinomycetota
Yonghaparkia alkaliphila DSM 19663 [JACGWX]
111404
111330
-
Lys
TTT
[ENA]
¡û
>W2011448539
RKIC01000011
Actinomycetota
Frigoribacterium sp. PhB24 [RKIC]
19983
19909
-
Lys
TTT
[ENA]
¡û
>W2011448582
RKID01000003
Actinomycetota
Frigoribacterium sp. PhB118 [RKID]
20202
20276
+
Lys
TTT
[ENA]
¡û
>W2011539489
SCNU01000026
Actinomycetota
Microbacteriaceae bacterium 3R27F9-B [SCNU]
6182
6256
+
Lys
TTT
[ENA]
¡û
>W2011541202
SCPB01000007
Actinomycetota
Microbacteriaceae bacterium X2B [SCPB]
18315
18242
-
Lys
TTT
[ENA]
¡û
>W2011688795
SSCL01000011
Actinomycetota
Sinomonas sp. NEAU-HV1 [SSCL]
141501
141575
+
Lys
TTT
[ENA]
¡û
>W2011692087
SSSM01000005
Actinomycetota
Naasia sp. YIM 131853 [SSSM]
687124
687197
+
Lys
TTT
[ENA]
¡û
>W2011702744
SWDW01000013
Actinomycetota
Sinomonas albida LC13 [SWDW]
130247
130321
+
Lys
TTT
[ENA]
¡û
>W2012227954
WBIR01000007
Actinomycetota
Agromyces salentinus JCM 14323 [WBIR]
87879
87953
+
Lys
TTT
[ENA]
¡û
>W2110023354
BMFY01000006
Actinomycetota
Sediminivirga luteola CGMCC 1.12785 [BMFY]
562
488
-
Lys
TTT
[ENA]
¡û
>W2110027668
BMJI01000013
Actinomycetota
Tersicoccus solisilvae CGMCC 1.15480 [BMJI]
45925
45998
+
Lys
TTT
[ENA]
¡û
>W2110185936
JABUKC010000003
Actinomycetota
Yonghaparkia alkaliphila GA224 [JABUKC]
185868
185942
+
Lys
TTT
[ENA]
¡û
>W2110290185
JACYTX010000001
Actinomycetota
Frigoribacterium sp. CFBP 8766 CFBP8766 [JACYTX]
552824
552750
-
Lys
TTT
[ENA]
¡û
>W2110290385
JACYUB010000001
Actinomycetota
Frigoribacterium sp. CFBP 8751 CFBP8751 [JACYUB]
723109
723035
-
Lys
TTT
[ENA]
¡û
>W2110290644
JACYUH010000001
Actinomycetota
Frigoribacterium sp. CFBP 8759 CFBP8759 [JACYUH]
725427
725501
+
Lys
TTT
[ENA]
¡û
>W2110290819
JACYUO010000002
Actinomycetota
Frigoribacterium sp. CFBP 8754 CFBP8754 [JACYUO]
742192
742265
+
Lys
TTT
[ENA]
¡û
>W2110291746
JACYVL010000001
Actinomycetota
Frigoribacterium sp. CFBP 13707 CFBP13707 [JACYVL]
603249
603322
+
Lys
TTT
[ENA]
¡û
>W2110316682
JADGKM010000006
Actinomycetota
Sanguibacter inulinus DSM100099.1 [JADGKM]
118527
118601
+
Lys
TTT
[ENA]
¡û
>W2110325152
JADIJB010000003
Actinomycetota
Microbacterium ginsengiterrae JCM 15516 [JADIJB]
111591
111665
+
Lys
TTT
[ENA]
¡û
>W2110329562
JADKSD010000002
Actinomycetota
Frigoribacterium sp. VKM Ac-1396 [JADKSD]
432281
432207
-
Lys
TTT
[ENA]
¡û
>W2110454469
JAETXW010000017
Actinomycetota
Microbacterium oxydans VHA [JAETXW]
1343398
1343324
-
Lys
TTT
[ENA]
¡û
>W2110499564
JAFIBR010000001
Actinomycetota
Frigoribacterium sp. PvP121 [JAFIBR]
160027
160100
+
Lys
TTT
[ENA]
¡û
>W2110516212
JAFMSZ010000002
Actinomycetota
Naasia sp. SYSU D00057 [JAFMSZ]
322961
323036
+
Lys
TTT
[ENA]
¡û
>W10100681
ABUN01000013
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
34730
34655
-
Lys
TTT
[ENA]
¡û
>W2110562570
JAGMUS010000026
Actinomycetota
Microbacterium maritypicum stomach1 [JAGMUS]
19156
19230
+
Lys
TTT
[ENA]
¡û
>W2110574967
JAGTUK010000002
Actinomycetota
Microbacterium paraoxydans ku-mp [JAGTUK]
822733
822659
-
Lys
TTT
[ENA]
¡û
>W2110579822
JAGXJH010000005
Actinomycetota
Microbacterium sp. GbtcB2 [JAGXJH]
117638
117564
-
Lys
TTT
[ENA]
¡û
>C201132471
CP043430
Actinomycetota
Microbacterium sp. 1S1 [CP043430]
83483
83557
+
Lys
TTT
-
¡û
>C211060475
CP043650
Actinomycetota
Frigoribacterium sp. NBH87 [CP043650]
1443691
1443764
+
Lys
TTT
-
¡û
>C211152466
CP061742
Actinomycetota
Rathayibacter toxicus FH79 [CP061742]
1863686
1863760
+
Lys
TTT
-
¡û
>C211152510
CP061743
Actinomycetota
Rathayibacter toxicus FH232 [CP061743]
1902571
1902645
+
Lys
TTT
-
¡û
>C211377213
CP080380
Actinomycetota
Microbacterium sp. PAMC22086 [CP080380]
1480674
1480600
-
Lys
TTT
-
¡û
>C211411737
LR882982
Actinomycetota
Microbacterium hydrocarbonoxydans Marseille-P2596 [LR882982]
3624246
3624172
-
Lys
TTT
-
¡û
>C231004781
AP024525
Actinomycetota
Corynebacterium cyclohexanicum ATCC 51369 [AP024525]
353139
353214
+
Lys
TTT
-
¡û
>C231437354
CP101471
Actinomycetota
Microbacterium liquefaciens DND4 [CP101471]
2831158
2831232
+
Lys
TTT
-
¡û
>C231545472
CP113089
Actinomycetota
Microcella sp. MMS21-STM12 [CP113089]
590157
590231
+
Lys
TTT
-
¡û
>C231545516
CP113090
Actinomycetota
Microcella sp. MMS21-STM26 [CP113090]
165611
165685
+
Lys
TTT
-
¡û
>C241011849
AP027731
Actinomycetota
Naasia aerilata NBRC 108725 [AP027731]
707198
707272
+
Lys
TTT
-
¡û
>C241149889
CP051299
Actinomycetota
Microcella flavibacter WY83 [CP051299]
2223305
2223379
+
Lys
TTT
-
¡û
>W2130002657
BNCM01000021
Actinomycetota
Sinomonas sp. KCTC 49339 [BNCM]
16671
16597
-
Lys
TTT
[ENA]
¡û
>W2130018263
JACYNS010000024
Actinomycetota
Frigoribacterium sp. CFBP 13605 CFBP13605 [JACYNS]
13797
13723
-
Lys
TTT
[ENA]
¡û
>W2130027588
JAERRC010000032
Actinomycetota
Sinomonas sp. JC656 [JAERRC]
16671
16597
-
Lys
TTT
[ENA]
¡û
>W11100681
ABUN01000013
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
34730
34655
-
Lys
TTT
[ENA]
¡û
>WENV038774
AACY021959933
Marine microbial communities from Global Ocean Sampling (GOS)
448
373
-
Lys
TTT
[ENA]
>WENV050951
AACY022917646
Marine microbial communities from Global Ocean Sampling (GOS)
355
280
-
Lys
TTT
[ENA]
>W1511509394
JXQZ01000101
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
59301
59374
+
Lys
TTT
[ENA]
¡û
>W1511589851
LBFI01000024
Actinomycetota
Rathayibacter toxicus FH142 [LBFI]
354308
354233
-
Lys
TTT
[ENA]
¡û
>WENV050813
AACY022905153
Marine microbial communities from Global Ocean Sampling (GOS)
13
88
+
Lys
TTT
[ENA]
>WENV050916
AACY022914971
Marine microbial communities from Global Ocean Sampling (GOS)
481
406
-
Lys
TTT
[ENA]
>C161054994
CP013292
Actinomycetota
Rathayibacter toxicus WAC3373 [CP013292]
718746
718821
+
Lys
TTT
-
¡û
>WENV070077
AACY023796270
Marine microbial communities from Global Ocean Sampling (GOS)
1448
1373
-
Lys
TTT
[ENA]
>WENV070211
AACY023801461
Marine microbial communities from Global Ocean Sampling (GOS)
885
960
+
Lys
TTT
[ENA]
>WENV070381
AACY023807199
Marine microbial communities from Global Ocean Sampling (GOS)
582
507
-
Lys
TTT
[ENA]
>WENV070406
AACY023807893
Marine microbial communities from Global Ocean Sampling (GOS)
778
853
+
Lys
TTT
[ENA]
>WENV070472
AACY023810242
Marine microbial communities from Global Ocean Sampling (GOS)
1338
1263
-
Lys
TTT
[ENA]
>WENV070612
AACY023816317
Marine microbial communities from Global Ocean Sampling (GOS)
1416
1341
-
Lys
TTT
[ENA]
>WENV070693
AACY023819130
Marine microbial communities from Global Ocean Sampling (GOS)
1394
1469
+
Lys
TTT
[ENA]
>WENV070705
AACY023819661
Marine microbial communities from Global Ocean Sampling (GOS)
529
604
+
Lys
TTT
[ENA]
>WENV070717
AACY023819982
Marine microbial communities from Global Ocean Sampling (GOS)
449
374
-
Lys
TTT
[ENA]
>W1610620625
LHOZ01000080
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
98422
98497
+
Lys
TTT
[ENA]
¡û
>W1610722815
LMCX01000001
Actinomycetota
Yonghaparkia sp. Root332 [LMCX]
225537
225612
+
Lys
TTT
[ENA]
¡û
>W1610732210
LMKB01000001
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
129165
129240
+
Lys
TTT
[ENA]
¡û
>W1610733725
LMLG01000006
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
736972
736897
-
Lys
TTT
[ENA]
¡û
>W1610735082
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
2217221
2217296
+
Lys
TTT
[ENA]
¡û
>W1610738416
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
737654
737727
+
Lys
TTT
[ENA]
¡û
>W1610739246
LMPQ01000010
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
150510
150585
+
Lys
TTT
[ENA]
¡û
>W1610740463
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
2216479
2216554
+
Lys
TTT
[ENA]
¡û
>W1610743448
LMSV01000001
Actinomycetota
Yonghaparkia sp. Soil809 [LMSV]
1356604
1356529
-
Lys
TTT
[ENA]
¡û
>W1710748319
LHOZ01000080
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
98422
98497
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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