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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262623 (128 seq.)
>W1710857605
LMAK01000004
Bacteroidota
Formosa algae [LMAK]
159302
159377
+
Gly
TCC
[ENA]
¡û
>W1710857611
LMAK01000013
Bacteroidota
Formosa algae [LMAK]
74844
74769
-
Gly
TCC
[ENA]
¡û
>W1710857615
LMAK01000014
Bacteroidota
Formosa algae [LMAK]
105861
105786
-
Gly
TCC
[ENA]
¡û
>WENV010289
AACY020278371
Marine microbial communities from Global Ocean Sampling (GOS)
2245
2170
-
Gly
TCC
[ENA]
>W1711206665
LXEI01000008
Bacteroidota
Tamlana agarivorans [LXEI]
196996
196921
-
Gly
TCC
[ENA]
¡û
>W1711206670
LXEI01000010
Bacteroidota
Tamlana agarivorans [LXEI]
100283
100358
+
Gly
TCC
[ENA]
¡û
>W1711621503
MPDE01000001
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G2 [MPDE]
105904
105829
-
Gly
TCC
[ENA]
¡û
>W1711621527
MPDE01000011
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G2 [MPDE]
52222
52297
+
Gly
TCC
[ENA]
¡û
>W1711622854
MPGM01000004
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
123046
122971
-
Gly
TCC
[ENA]
¡û
>W1711622883
MPGM01000025
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
46116
46191
+
Gly
TCC
[ENA]
¡û
>WENV001054
AACY020032090
Marine microbial communities from Global Ocean Sampling (GOS)
858
783
-
Gly
TCC
[ENA]
>W131211410
ATMR01000034
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
123083
123008
-
Gly
TCC
[ENA]
¡û
>W131211412
ATMR01000034
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
122737
122662
-
Gly
TCC
[ENA]
¡û
>W131211432
ATMR01000128
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
11560
11635
+
Gly
TCC
[ENA]
¡û
>C171063293
CP017478
Bacteroidota
Urechidicola croceus LPB0138 [CP017478]
1246682
1246607
-
Gly
TCC
-
¡û
>WENV012296
AACY020335362
Marine microbial communities from Global Ocean Sampling (GOS)
1640
1563
-
Gly
TCC
[ENA]
>WENV001308
AACY020038597
Marine microbial communities from Global Ocean Sampling (GOS)
979
904
-
Gly
TCC
[ENA]
>WENV016067
AACY020454467
Marine microbial communities from Global Ocean Sampling (GOS)
2570
2645
+
Gly
TCC
[ENA]
>WENV180288473
OBIL01185492
[OBIL] metagenome; hydrothermal vent
113
38
-
Gly
TCC
[ENA]
¡û
>WENV180299449
OBJC01010768
[OBJC] metagenome; water
55
128
+
Gly
TCC
[ENA]
¡û
>WENV180581114
OCMH01034334
[OCMH] metagenome; diffuse fluid
267
194
-
Gly
TCC
[ENA]
¡û
>WENV180594907
OCPA01042297
[OCPA] marine metagenome; ENVO:00002010
322
249
-
Gly
TCC
[ENA]
¡û
>WENV180634554
OCRB01029747
[OCRB] metagenome; diffuse fluid
165
92
-
Gly
TCC
[ENA]
¡û
>W08005627
ABIB01000007
Bacteroidota
Kordia algicida OT-1 [ABIB]
160655
160730
+
Gly
TCC
[ENA]
¡û
>WENV181321864
OFKN01022990
[OFKN] marine metagenome; seawater
250
323
+
Gly
TCC
[ENA]
¡û
>W141238791
BBMK01000001
Bacteroidota
Nonlabens ulvanivorans [BBMK]
1076572
1076647
+
Gly
TCC
[ENA]
¡û
>WENV182564280
OJEE01001906
[OJEE] seawater metagenome; Sea water
1808
1881
+
Gly
TCC
[ENA]
¡û
>WENV182576208
OJFX01005487
[OJFX] seawater metagenome; Sea water
1152
1079
-
Gly
TCC
[ENA]
¡û
>WENV182592580
OJIR01004610
[OJIR] seawater metagenome; Sea water
2572
2645
+
Gly
TCC
[ENA]
¡û
>W141276379
JADT01000004
Bacteroidota
Olleya sp. VCSM12 [JADT]
152932
153007
+
Gly
TCC
[ENA]
¡û
>WENV183619054
OOFP01020518
[OOFP] marine metagenome; seawater
148
75
-
Gly
TCC
[ENA]
¡û
>WENV183622547
OOFV01084610
[OOFV] marine metagenome; seawater
281
208
-
Gly
TCC
[ENA]
¡û
>WENV183629736
OOGQ01004145
[OOGQ] marine metagenome; seawater
448
375
-
Gly
TCC
[ENA]
¡û
>WENV170568764
FLMP01075888
[FLMP] seawater metagenome; seawater
778
853
+
Gly
TCC
[ENA]
¡û
>WENV170601806
FUWD010194234
[FUWD] metagenome; unknown
300
375
+
Gly
TCC
[ENA]
¡û
>WENV170951351
MEHZ011549524
[MEHZ] marine metagenome; marine surface water
602
677
+
Gly
TCC
[ENA]
¡û
>C181113316
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
1735612
1735685
+
Gly
TCC
-
¡û
>C181196416
CP031153
Bacteroidota
Kordia sp. SMS9 [CP031153]
2435830
2435903
+
Gly
TCC
-
¡û
>C181196419
CP031153
Bacteroidota
Kordia sp. SMS9 [CP031153]
2619616
2619689
+
Gly
TCC
-
¡û
>C181202805
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
3100206
3100279
+
Gly
TCC
-
¡û
>C191018077
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
706907
706980
+
Gly
TCC
-
¡û
>C191166180
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
555042
554969
-
Gly
TCC
-
¡û
>WENV023279
AACY020712910
Marine microbial communities from Global Ocean Sampling (GOS)
126
203
+
Gly
TCC
[ENA]
>WENV024108
AACY020780789
Marine microbial communities from Global Ocean Sampling (GOS)
448
525
+
Gly
TCC
[ENA]
>WENV025051
AACY020857230
Marine microbial communities from Global Ocean Sampling (GOS)
294
217
-
Gly
TCC
[ENA]
>WENV025705
AACY020908528
Marine microbial communities from Global Ocean Sampling (GOS)
703
628
-
Gly
TCC
[ENA]
>W2010317810
CACSGG010000003
Bacteroidota
Tenacibaculum maritimum Aq16-88 [CACSGG]
69512
69439
-
Gly
TCC
[ENA]
¡û
>W2010317889
CACSGH010000096
Bacteroidota
Tenacibaculum maritimum NAC SLCC MFF [CACSGH]
41033
40960
-
Gly
TCC
[ENA]
¡û
>W2010318153
CACSGQ010000065
Bacteroidota
Tenacibaculum maritimum TFA4 [CACSGQ]
54364
54437
+
Gly
TCC
[ENA]
¡û
>W2010318186
CACSGR010000118
Bacteroidota
Tenacibaculum maritimum USC SE30.1 [CACSGR]
61573
61646
+
Gly
TCC
[ENA]
¡û
>W2010318294
CACSGT010000123
Bacteroidota
Tenacibaculum maritimum P2-27 [CACSGT]
60501
60428
-
Gly
TCC
[ENA]
¡û
>W2010318470
CACSHA010000045
Bacteroidota
Tenacibaculum maritimum DPIF 89/0239-1 [CACSHA]
69049
69122
+
Gly
TCC
[ENA]
¡û
>W2010318512
CACSHB010000023
Bacteroidota
Tenacibaculum maritimum Aq16-89 [CACSHB]
69512
69439
-
Gly
TCC
[ENA]
¡û
>W2010318708
CACSHG010000089
Bacteroidota
Tenacibaculum maritimum JIP 10/97 [CACSHG]
69456
69383
-
Gly
TCC
[ENA]
¡û
>W2010597135
JABFDE010000001
Bacteroidota
Winogradskyella sp. Ha767 [JABFDE]
807258
807185
-
Gly
TCC
[ENA]
¡û
>W2010597291
JABFDI010000015
Bacteroidota
Winogradskyella pacifica R3187 [JABFDI]
24110
24037
-
Gly
TCC
[ENA]
¡û
>W2010597301
JABFDI010000029
Bacteroidota
Winogradskyella pacifica R3187 [JABFDI]
22903
22830
-
Gly
TCC
[ENA]
¡û
>W2010597303
JABFDI010000029
Bacteroidota
Winogradskyella pacifica R3187 [JABFDI]
22516
22443
-
Gly
TCC
[ENA]
¡û
>W2010688229
JACGLS010000003
Bacteroidota
Tenacibaculum sp. S7007 [JACGLS]
145743
145816
+
Gly
TCC
[ENA]
¡û
>W2010700782
JACHGE010000010
Bacteroidota
Algibacter amylolyticus DSM 29199 [JACHGE]
20426
20353
-
Gly
TCC
[ENA]
¡û
>WENV030981
AACY021328196
Marine microbial communities from Global Ocean Sampling (GOS)
545
468
-
Gly
TCC
[ENA]
>W2011355414
RAQJ01000001
Bacteroidota
Ichthyenterobacterium magnum DSM 26283 [RAQJ]
379179
379106
-
Gly
TCC
[ENA]
¡û
>W2011355418
RAQJ01000001
Bacteroidota
Ichthyenterobacterium magnum DSM 26283 [RAQJ]
149315
149242
-
Gly
TCC
[ENA]
¡û
>WENV031815
AACY021396441
Marine microbial communities from Global Ocean Sampling (GOS)
137
214
+
Gly
TCC
[ENA]
>W2012042512
VISI01000002
Bacteroidota
Olleya sp. Hel_I_94 [VISI]
1306485
1306412
-
Gly
TCC
[ENA]
¡û
>WENV032058
AACY021416268
Marine microbial communities from Global Ocean Sampling (GOS)
57
134
+
Gly
TCC
[ENA]
>W2012221743
WAAU01000013
Bacteroidota
Tenacibaculum aiptasiae a4 [WAAU]
83171
83098
-
Gly
TCC
[ENA]
¡û
>W2012221751
WAAU01000028
Bacteroidota
Tenacibaculum aiptasiae a4 [WAAU]
19374
19447
+
Gly
TCC
[ENA]
¡û
>W2012441762
WUDS01000009
Bacteroidota
Algibacter wandonensis KCTC 32381 [WUDS]
934
861
-
Gly
TCC
[ENA]
¡û
>W2012441766
WUDS01000011
Bacteroidota
Algibacter wandonensis KCTC 32381 [WUDS]
20960
20887
-
Gly
TCC
[ENA]
¡û
>W2110020342
BMDQ01000001
Bacteroidota
Winogradskyella haliclonae CCM 8681 [BMDQ]
1492871
1492944
+
Gly
TCC
[ENA]
¡û
>W2110022872
BMFQ01000001
Bacteroidota
Bizionia arctica CGMCC 1.12751 [BMFQ]
1318402
1318475
+
Gly
TCC
[ENA]
¡û
>W2110022893
BMFQ01000003
Bacteroidota
Bizionia arctica CGMCC 1.12751 [BMFQ]
505797
505724
-
Gly
TCC
[ENA]
¡û
>W2110315289
JADFCO010000063
Bacteroidota
Nonlabens antarcticus JCM 14068 [JADFCO]
290227
290154
-
Gly
TCC
[ENA]
¡û
>W2110330970
JADKYU010000366
Bacteroidota
Nonlabens mediterrranea TC4 [JADKYU]
450
523
+
Gly
TCC
[ENA]
¡û
>W2110330985
JADKYU010000787
Bacteroidota
Nonlabens mediterrranea TC4 [JADKYU]
4280
4353
+
Gly
TCC
[ENA]
¡û
>W2110362454
JADOTV010000018
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
61275
61348
+
Gly
TCC
[ENA]
¡û
>W2110362455
JADOTV010000018
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
61592
61665
+
Gly
TCC
[ENA]
¡û
>W2110362456
JADOTV010000018
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
61729
61802
+
Gly
TCC
[ENA]
¡û
>W2110362457
JADOTV010000018
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
61869
61942
+
Gly
TCC
[ENA]
¡û
>W2110362458
JADOTV010000018
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
62006
62079
+
Gly
TCC
[ENA]
¡û
>W2110409011
JAEHFJ010000001
Bacteroidota
Aureibaculum sp. A20 [JAEHFJ]
698232
698159
-
Gly
TCC
[ENA]
¡û
>W2110556628
JAGJCB010000010
Bacteroidota
Mariniflexile gromovii KCTC 12570 [JAGJCB]
130886
130813
-
Gly
TCC
[ENA]
¡û
>W2110556635
JAGJCB010000017
Bacteroidota
Mariniflexile gromovii KCTC 12570 [JAGJCB]
20304
20377
+
Gly
TCC
[ENA]
¡û
>W2110611063
JAHKPD010000011
Bacteroidota
Tamlana agarivorans I2M19 [JAHKPD]
341042
340969
-
Gly
TCC
[ENA]
¡û
>W2110611066
JAHKPD010000011
Bacteroidota
Tamlana agarivorans I2M19 [JAHKPD]
163863
163790
-
Gly
TCC
[ENA]
¡û
>W2110611751
JAHKPS010000007
Bacteroidota
Winogradskyella psychrotolerans D3R19 [JAHKPS]
66101
66174
+
Gly
TCC
[ENA]
¡û
>W2110611764
JAHKPS010000018
Bacteroidota
Winogradskyella psychrotolerans D3R19 [JAHKPS]
320685
320758
+
Gly
TCC
[ENA]
¡û
>C211118268
CP058988
Bacteroidota
Cellulophaga sp. HaHa_2_95 [CP058988]
4064954
4064881
-
Gly
TCC
-
¡û
>C211118326
CP058990
Bacteroidota
Cellulophaga sp. HaHaR_3_176 [CP058990]
408854
408927
+
Gly
TCC
-
¡û
>C211248406
CP068547
Bacteroidota
Tamlana sp. s12 [CP068547]
1552664
1552737
+
Gly
TCC
-
¡û
>C211248409
CP068547
Bacteroidota
Tamlana sp. s12 [CP068547]
1702802
1702875
+
Gly
TCC
-
¡û
>W1510012898
BBNQ01000011
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
581
506
-
Gly
TCC
[ENA]
¡û
>W1510012903
BBNQ01000016
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
20896
20821
-
Gly
TCC
[ENA]
¡û
>W1510013022
BBNU01000012
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
185487
185562
+
Gly
TCC
[ENA]
¡û
>W1510013025
BBNU01000013
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
21722
21647
-
Gly
TCC
[ENA]
¡û
>C231053701
CP046242
Bacteroidota
Bizionia sp. M204 [CP046242]
1940742
1940669
-
Gly
TCC
-
¡û
>C231569578
CP115819
Bacteroidota
Cellulophaga omnivescoria MSK1 [CP115819]
614339
614266
-
Gly
TCC
-
¡û
>C241155520
CP053350
Bacteroidota
Winogradskyella forsetii SW133 [CP053350]
1887698
1887625
-
Gly
TCC
-
¡û
>C241355089
CP140159
Bacteroidota
Cellulophaga lytica DSMZ 7489 [CP140159]
145335
145408
+
Gly
TCC
-
¡û
>WENV037654
AACY021872765
Marine microbial communities from Global Ocean Sampling (GOS)
301
378
+
Gly
TCC
[ENA]
>WENV038849
AACY021965608
Marine microbial communities from Global Ocean Sampling (GOS)
592
515
-
Gly
TCC
[ENA]
>WENV040842
AACY022111800
Marine microbial communities from Global Ocean Sampling (GOS)
723
646
-
Gly
TCC
[ENA]
>WENV041609
AACY022172252
Marine microbial communities from Global Ocean Sampling (GOS)
389
314
-
Gly
TCC
[ENA]
>WENV042176
AACY022216710
Marine microbial communities from Global Ocean Sampling (GOS)
472
547
+
Gly
TCC
[ENA]
>WENV047435
AACY022666476
Marine microbial communities from Global Ocean Sampling (GOS)
763
686
-
Gly
TCC
[ENA]
>WENV047492
AACY022670393
Marine microbial communities from Global Ocean Sampling (GOS)
717
640
-
Gly
TCC
[ENA]
>W11176853
AFXZ01000050
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
43596
43521
-
Gly
TCC
[ENA]
¡û
>WENV055525
AACY023230537
Marine microbial communities from Global Ocean Sampling (GOS)
1177
1102
-
Gly
TCC
[ENA]
>WENV055676
AACY023235591
Marine microbial communities from Global Ocean Sampling (GOS)
403
478
+
Gly
TCC
[ENA]
>C161047100
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
1572802
1572727
-
Gly
TCC
[Ensembl]
¡û
>C161047103
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
1350147
1350072
-
Gly
TCC
[Ensembl]
¡û
>C161105075
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
2176556
2176631
+
Gly
TCC
[Ensembl]
¡û
>C161105082
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3347985
3347910
-
Gly
TCC
[Ensembl]
¡û
>C161105088
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3003093
3003018
-
Gly
TCC
[Ensembl]
¡û
>WENV057515
AACY023297284
Marine microbial communities from Global Ocean Sampling (GOS)
625
550
-
Gly
TCC
[ENA]
>WENV067939
AACY023708122
Marine microbial communities from Global Ocean Sampling (GOS)
480
403
-
Gly
TCC
[ENA]
>WENV072547
AACY023888656
Marine microbial communities from Global Ocean Sampling (GOS)
1139
1064
-
Gly
TCC
[ENA]
>WENV073404
AACY023926283
Marine microbial communities from Global Ocean Sampling (GOS)
245
320
+
Gly
TCC
[ENA]
>W1610626524
LICI01000067
Bacteroidota
Cryomorphaceae bacterium BACL29 MAG-121220-bin8 [LICI]
1636
1561
-
Gly
TCC
[ENA]
¡û
>W1610719986
LMAK01000004
Bacteroidota
Formosa algae [LMAK]
159302
159377
+
Gly
TCC
[ENA]
¡û
>W1610719992
LMAK01000013
Bacteroidota
Formosa algae [LMAK]
74844
74769
-
Gly
TCC
[ENA]
¡û
>W1610719996
LMAK01000014
Bacteroidota
Formosa algae [LMAK]
105861
105786
-
Gly
TCC
[ENA]
¡û
>WENV007654
AACY020202686
Marine microbial communities from Global Ocean Sampling (GOS)
57
132
+
Gly
TCC
[ENA]
>W1610994171
LXEI01000008
Bacteroidota
Tamlana agarivorans [LXEI]
196996
196921
-
Gly
TCC
[ENA]
¡û
>W1610994176
LXEI01000010
Bacteroidota
Tamlana agarivorans [LXEI]
100283
100358
+
Gly
TCC
[ENA]
¡û
>WENV008548
AACY020229880
Marine microbial communities from Global Ocean Sampling (GOS)
759
834
+
Gly
TCC
[ENA]
>W1710757651
LICI01000067
Bacteroidota
Cryomorphaceae bacterium BACL29 MAG-121220-bin8 [LICI]
1636
1561
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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