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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26265 (82 seq.)
>W1710853023
LLWF02000129
Alphaproteobacteria
Roseomonas mucosa [LLWF]
3272
3361
+
Ser
TGA
[ENA]
¡û
>W1711072479
LSHQ01000025
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
81764
81853
+
Ser
TGA
[ENA]
¡û
>W1711072760
LSHX01000017
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
44611
44700
+
Ser
TGA
[ENA]
¡û
>W1711073047
LSIE01000081
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
4286
4197
-
Ser
TGA
[ENA]
¡û
>W1711074003
LSJC01000216
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4231
4320
+
Ser
TGA
[ENA]
¡û
>W1711075137
LSKD01000062
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
21413
21502
+
Ser
TGA
[ENA]
¡û
>W1711075277
LSKG01000151
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
4538
4449
-
Ser
TGA
[ENA]
¡û
>W1711075371
LSKI01000191
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
4241
4330
+
Ser
TGA
[ENA]
¡û
>W1711075625
LSKO01002164
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
4606
4517
-
Ser
TGA
[ENA]
¡û
>W1711075684
LSKP01000135
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
4219
4308
+
Ser
TGA
[ENA]
¡û
>W1711386102
MEEX01000009
Alphaproteobacteria
Phenylobacterium sp. SCN 70-31 [MEEX]
132155
132066
-
Ser
TGA
[ENA]
¡û
>W1711506175
MKWE01000017
Alphaproteobacteria
Rhodospirillales bacterium 70-18 [MKWE]
241075
240986
-
Ser
TGA
[ENA]
¡û
>W1711632186
MPSB01000001
Alphaproteobacteria
Sphingomonas jeddahensis G39 [MPSB]
235329
235240
-
Ser
TGA
[ENA]
¡û
>W1711942714
NBBJ01000001
Alphaproteobacteria
Sphingomonas mucosissima [NBBJ]
1082811
1082722
-
Ser
TGA
[ENA]
¡û
>PL171000039
AP010947
Alphaproteobacteria
Azospirillum sp. B510 plasmid:pAB510a
544324
544235
-
Ser
TGA
[ENA]
¡û
>C171039545
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1886357
1886446
+
Ser
TGA
-
¡û
>WENV180022101
FTFP01000119
[FTFP] metagenome; soil
281
370
+
Ser
TGA
[ENA]
¡û
>W141096526
AVFL01000012
Alphaproteobacteria
Skermanella stibiiresistens SB22 [AVFL]
161970
161881
-
Ser
TGA
[ENA]
¡û
>WENV181295524
OFHI01059416
[OFHI] soil metagenome; Clay
330
419
+
Ser
TGA
[ENA]
¡û
>W141276643
JADY01000008
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
183457
183546
+
Ser
TGA
[ENA]
¡û
>C181102058
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
888750
888661
-
Ser
TGA
-
¡û
>W141558708
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
210603
210692
+
Ser
TGA
[ENA]
¡û
>W1911391056
NWBU01000007
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
256845
256756
-
Ser
TGA
[ENA]
¡û
>W1911687925
QLJC01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env8_1116 [QLJC]
222938
222849
-
Ser
TGA
[ENA]
¡û
>W1911688070
QLJF01000009
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env2_1116 [QLJF]
123596
123685
+
Ser
TGA
[ENA]
¡û
>W1911688198
QLJI01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt4_0816 [QLJI]
221738
221827
+
Ser
TGA
[ENA]
¡û
>W1911688245
QLJJ01000004
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt2_0716 [QLJJ]
160058
160147
+
Ser
TGA
[ENA]
¡û
>W1911718468
QQWJ01000006
Alphaproteobacteria
Sphingomonas koreensis KCTC 2883 [QQWJ]
220524
220613
+
Ser
TGA
[ENA]
¡û
>W1911718602
QQWM01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env15_0417 [QQWM]
471797
471708
-
Ser
TGA
[ENA]
¡û
>W1911718776
QQWQ01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env9_0217 [QQWQ]
123619
123708
+
Ser
TGA
[ENA]
¡û
>W1911718872
QQWS01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt9_0208 [QQWS]
123601
123690
+
Ser
TGA
[ENA]
¡û
>W1911719254
QQXA01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt14_0612 [QQXA]
123681
123770
+
Ser
TGA
[ENA]
¡û
>W1911719367
QQXC01000012
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt11_0411 [QQXC]
17797
17708
-
Ser
TGA
[ENA]
¡û
>W1911719403
QQXD01000009
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt12_0112 [QQXD]
123530
123619
+
Ser
TGA
[ENA]
¡û
>W1911719458
QQXE01000012
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env5_1116 [QQXE]
17797
17708
-
Ser
TGA
[ENA]
¡û
>W1911719902
QQXS01000001
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env54_1217 [QQXS]
221738
221827
+
Ser
TGA
[ENA]
¡û
>W1911719961
QQXT01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env57_1217 [QQXT]
375535
375446
-
Ser
TGA
[ENA]
¡û
>W1911720366
QQYC01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env45_1017 [QQYC]
160062
160151
+
Ser
TGA
[ENA]
¡û
>W1911720766
QQYL01000001
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env37_0717 [QQYL]
221744
221833
+
Ser
TGA
[ENA]
¡û
>W1911720817
QQYM01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env35_0717 [QQYM]
123596
123685
+
Ser
TGA
[ENA]
¡û
>W1911720910
QQYO01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env33_0717 [QQYO]
123613
123702
+
Ser
TGA
[ENA]
¡û
>W1911721036
QQYR01000001
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env30_0717 [QQYR]
221744
221833
+
Ser
TGA
[ENA]
¡û
>W1810594122
QFYR01000003
Alphaproteobacteria
Phenylobacterium deserti YIM 73061 [QFYR]
150232
150143
-
Ser
TGA
[ENA]
¡û
>W1810725244
QOCK01000002
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
23727
23638
-
Ser
TGA
[ENA]
¡û
>W2010370217
CAHJWP010000023
Alphaproteobacteria
Sphingomonadaceae bacterium [CAHJWP]
16424
16337
-
Ser
TGA
[ENA]
¡û
>W2010567423
JAATJC010000001
Alphaproteobacteria
Sphingomonas kaistensis DSM 16846 [JAATJC]
2068004
2068093
+
Ser
TGA
[ENA]
¡û
>W2010651871
JABXXQ010000460
Alphaproteobacteria
Endobacter medicaginis LMG 26838 [JABXXQ]
146
235
+
Ser
TGA
[ENA]
¡û
>W2010717153
JACHXV010000005
Alphaproteobacteria
Endobacter medicaginis CECT 8088 [JACHXV]
359900
359989
+
Ser
TGA
[ENA]
¡û
>W2011133594
NWBU01000007
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
256845
256756
-
Ser
TGA
[ENA]
¡û
>W2011839010
UGVN01000001
Alphaproteobacteria
Roseomonas mucosa NCTC13291 [UGVN]
3558511
3558422
-
Ser
TGA
[ENA]
¡û
>W2012004732
VEIX01000003
Alphaproteobacteria
Roseomonas gilardii DE0006 [VEIX]
268666
268577
-
Ser
TGA
[ENA]
¡û
>W2110023718
BMGG01000002
Alphaproteobacteria
Chelatococcus reniformis CGMCC 1.12919 [BMGG]
593948
593859
-
Ser
TGA
[ENA]
¡û
>W2110454002
JAETGP010000021
Alphaproteobacteria
Skermanella mucosa KEMB 2255-438 [JAETGP]
53964
53875
-
Ser
TGA
[ENA]
¡û
>W2110454158
JAETWB010000001
Alphaproteobacteria
Belnapia sp. T18 [JAETWB]
1257818
1257730
-
Ser
TGA
[ENA]
¡û
>W2110455656
JAEUWT010000007
Alphaproteobacteria
Skermanella rosea KEMB 2255-458 [JAEUWT]
10553
10642
+
Ser
TGA
[ENA]
¡û
>W2110493850
JAFFJU010000004
Alphaproteobacteria
Sphingomonas sp. SYSU D00720 [JAFFJU]
20061
19972
-
Ser
TGA
[ENA]
¡û
>W2110493937
JAFFJW010000004
Alphaproteobacteria
Sphingomonas sp. SYSU D00722 [JAFFJW]
20061
19972
-
Ser
TGA
[ENA]
¡û
>C211239182
CP067420
Alphaproteobacteria
Skermanella sp. TT6 [CP067420]
516043
516132
+
Ser
TGA
-
¡û
>C231221386
CP086106
Alphaproteobacteria
Skermanella mucosa KEMB 2255-438 [CP086106]
548737
548826
+
Ser
TGA
-
¡û
>C231221470
CP086111
Alphaproteobacteria
Skermanella rosea KEMB 2255-458 [CP086111]
4913132
4913221
+
Ser
TGA
-
¡û
>C231381059
CP097253
Alphaproteobacteria
Sphingomonas glaciei S8-45 [CP097253]
687087
686998
-
Ser
TGA
-
¡û
>C231385332
CP097462
Alphaproteobacteria
Sphingomonas sp. KRR8 [CP097462]
643244
643155
-
Ser
TGA
-
¡û
>C231412921
CP099471
Alphaproteobacteria
Roseomonas mucosa TT14 [CP099471]
4095912
4096001
+
Ser
TGA
-
¡û
>C241034293
CP030265
Alphaproteobacteria
Skermanella pratensis W17 [CP030265]
460261
460172
-
Ser
TGA
-
¡û
>C241086936
CP044117
Alphaproteobacteria
Roseomonas mucosa FDAARGOS_658 [CP044114, CP044115, CP044116, CP044117]
1602706
1602617
-
Ser
TGA
-
¡û
>C241096684
CP045434
Alphaproteobacteria
Sphingomonas ginsengisoli An et al. 2013 KACC 16858 [CP045434]
666245
666334
+
Ser
TGA
-
¡û
>C241138275
CP049869
Alphaproteobacteria
Sphingomonas piscis HDW15B [CP049869]
48518
48429
-
Ser
TGA
-
¡û
>WENV061946
AACY023444672
Marine microbial communities from Global Ocean Sampling (GOS)
1256
1345
+
Ser
TGA
[ENA]
>W1610716140
LLWF01000229
Alphaproteobacteria
Roseomonas mucosa [LLWF]
3191
3280
+
Ser
TGA
[ENA]
¡û
>W1610911739
LSHQ01000025
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
81764
81853
+
Ser
TGA
[ENA]
¡û
>W1610912020
LSHX01000017
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
44611
44700
+
Ser
TGA
[ENA]
¡û
>W1610912352
LSIE01000081
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
4286
4197
-
Ser
TGA
[ENA]
¡û
>W1610913308
LSJC01000216
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4231
4320
+
Ser
TGA
[ENA]
¡û
>W1610914442
LSKD01000062
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
21413
21502
+
Ser
TGA
[ENA]
¡û
>W1610914582
LSKG01000151
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
4538
4449
-
Ser
TGA
[ENA]
¡û
>W1610914676
LSKI01000191
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
4241
4330
+
Ser
TGA
[ENA]
¡û
>W1610914930
LSKO01002164
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
4606
4517
-
Ser
TGA
[ENA]
¡û
>W1610914989
LSKP01000135
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
4219
4308
+
Ser
TGA
[ENA]
¡û
>W1710083088
BDJB01000005
Alphaproteobacteria
Sphingomonas sp. TZW2008 [BDJB]
335155
335066
-
Ser
TGA
[ENA]
¡û
>W1710084286
BDLP01000191
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
2834
2923
+
Ser
TGA
[ENA]
¡û
>W1710510479
FMXZ01000003
Alphaproteobacteria
Belnapia rosea [FMXZ]
405013
404924
-
Ser
TGA
[ENA]
¡û
>W1710513081
FMZX01000001
Alphaproteobacteria
Belnapia rosea [FMZX]
897648
897737
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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