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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262696 (76 seq.)
>W1711224665
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
394688
394613
-
Thr
TGT
[ENA]
¡û
>W1711339983
MCAW01000002
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
872
797
-
Thr
TGT
[ENA]
¡û
>W131186209
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
508550
508475
-
Thr
TGT
[ENA]
¡û
>W131186571
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1388025
1387950
-
Thr
TGT
[ENA]
¡û
>WENV180110969
OAPN01018187
[OAPN] marine metagenome; 2011
551
476
-
Thr
TGT
[ENA]
¡û
>WENV180209054
OBAK01010708
[OBAK] marine metagenome; ENVO.00002150
634
559
-
Thr
TGT
[ENA]
¡û
>WENV180209447
OBAL01000913
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
3472
3397
-
Thr
TGT
[ENA]
¡û
>WENV180361763
OBNW01000550
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
399
474
+
Thr
TGT
[ENA]
¡û
>WENV180365772
OBOC01030156
[OBOC] marine metagenome; ocean water
301
376
+
Thr
TGT
[ENA]
¡û
>WENV180393120
OBPP01080651
[OBPP] marine metagenome; ENVO:00002042
78
153
+
Thr
TGT
[ENA]
¡û
>WENV180393973
OBPR01031452
[OBPR] marine metagenome; ENVO:00002042
383
458
+
Thr
TGT
[ENA]
¡û
>WENV181187992
OEOE01009820
[OEOE] activated sludge metagenome; Activated Sludge
277
202
-
Thr
TGT
[ENA]
¡û
>WENV181189069
OEOF01000207
[OEOF] activated sludge metagenome; Activated Sludge
9835
9910
+
Thr
TGT
[ENA]
¡û
>WENV181369620
OFQP01012984
[OFQP] freshwater metagenome; Freshwater Lake
455
380
-
Thr
TGT
[ENA]
¡û
>WENV181377303
OFRA01006710
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1710
1785
+
Thr
TGT
[ENA]
¡û
>WENV181399928
OFSF01000325
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1857
1932
+
Thr
TGT
[ENA]
¡û
>WENV181835648
OGVI01007666
[OGVI] freshwater metagenome; freshwater
225
300
+
Thr
TGT
[ENA]
¡û
>WENV181836425
OGVJ01006729
[OGVJ] freshwater metagenome; freshwater
1164
1239
+
Thr
TGT
[ENA]
¡û
>WENV181841618
OGVS01001779
[OGVS] freshwater metagenome; freshwater
1258
1183
-
Thr
TGT
[ENA]
¡û
>WENV181843398
OGVU01012211
[OGVU] freshwater metagenome; freshwater
45
120
+
Thr
TGT
[ENA]
¡û
>WENV181843425
OGVU01014240
[OGVU] freshwater metagenome; freshwater
96
171
+
Thr
TGT
[ENA]
¡û
>WENV181843597
OGVU01033066
[OGVU] freshwater metagenome; freshwater
408
483
+
Thr
TGT
[ENA]
¡û
>WENV181857163
OGWN01061092
[OGWN] freshwater metagenome; freshwater
448
523
+
Thr
AGT
[ENA]
¡û
>WENV001902
AACY020053799
Marine microbial communities from Global Ocean Sampling (GOS)
851
928
+
Thr
TGT
[ENA]
>WENV183726675
PJTO01000064
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
163820
163895
+
Thr
TGT
[ENA]
¡û
>WENV170150413
CEOC01122267
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
361
-
Thr
TGT
[ENA]
¡û
>WENV170166577
CEOO01079147
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
361
-
Thr
TGT
[ENA]
¡û
>WENV170602791
FUWD010263900
[FUWD] metagenome; unknown
448
523
+
Thr
TGT
[ENA]
¡û
>WENV170654535
JRYL01000222
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
195422
195497
+
Thr
TGT
[ENA]
¡û
>WENV170654801
JRYL01023830
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2509
2584
+
Thr
TGT
[ENA]
¡û
>WENV170705834
LNAP01000436
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27627
27552
-
Thr
TGT
[ENA]
¡û
>WENV170705925
LNAP01000645
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23258
23183
-
Thr
TGT
[ENA]
¡û
>WENV170708461
LNAP01084187
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
779
704
-
Thr
TGT
[ENA]
¡û
>WENV170708752
LNAQ01000549
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8953
8878
-
Thr
TGT
[ENA]
¡û
>WENV170708772
LNAQ01000945
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2506
2431
-
Thr
TGT
[ENA]
¡û
>WENV170708814
LNAQ01001462
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
511
436
-
Thr
TGT
[ENA]
¡û
>WENV170836646
MDSZ01135173
[MDSZ] marine metagenome; seawater
581
506
-
Thr
TGT
[ENA]
¡û
>W09101036
AADX02000024
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
13502
13427
-
Thr
TGT
[ENA]
¡û
>W09111763
ABXG01000004
Betaproteobacteria
beta proteobacterium KB13 [ABXG]
239077
239002
-
Thr
TGT
[ENA]
¡û
>C09107555
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
303188
303263
+
Thr
TGT
[Ensembl]
¡û
>C151104062
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
196813
196888
+
Thr
TGT
[Ensembl]
¡û
>W2012093642
VMSE01000002
Betaproteobacteria
Methylovorus glucosotrophus DSM 6874 [VMSE]
219468
219543
+
Thr
TGT
[ENA]
¡û
>ENV09000086
ABSN01006905
Freshwater sediment metagenome lwFormaldehyde_C1
354
279
-
Thr
TGT
[ENA]
¡û
>ENV09000119
ABSN01014228
Freshwater sediment metagenome lwFormaldehyde_C1
369
294
-
Thr
TGT
[ENA]
¡û
>ENV09001440
ABSR01008649
Freshwater sediment metagenome lwMethylamine_C1
202
127
-
Thr
TGT
[ENA]
¡û
>ENV09001470
ABSR01013362
Freshwater sediment metagenome lwMethylamine_C1
585
510
-
Thr
TGT
[ENA]
¡û
>C211324770
CP073759
Betaproteobacteria
Methylophilaceae bacterium [CP073759]
740274
740199
-
Thr
TGT
-
¡û
>W2110716763
JAJAQH010000005
Betaproteobacteria
Methylovorus menthalis VKM B-2663 [JAJAQH]
222746
222821
+
Thr
TGT
[ENA]
¡û
>W2110717230
JAJAVC010000004
Betaproteobacteria
Methylobacillus arboreus VKM B-2590 [JAJAVC]
232144
232219
+
Thr
TGT
[ENA]
¡û
>W2110717283
JAJAVD010000003
Betaproteobacteria
Methylobacillus caricis VKM B-3158 [JAJAVD]
229720
229795
+
Thr
TGT
[ENA]
¡û
>W2110717324
JAJAVE010000002
Betaproteobacteria
Methylobacillus gramineus VKM B-2591 [JAJAVE]
231921
231996
+
Thr
TGT
[ENA]
¡û
>W2110717366
JAJAVF010000003
Betaproteobacteria
Methylobacillus methanolivorans VKM B-3037 [JAJAVF]
601
526
-
Thr
TGT
[ENA]
¡û
>W2110717398
JAJAVG010000006
Betaproteobacteria
Methylovorus mays VKM B-2221 [JAJAVG]
226887
226962
+
Thr
TGT
[ENA]
¡û
>C231470040
CP103436
Betaproteobacteria
Methylophilaceae bacterium LSUCC0717 [CP103436]
1107404
1107329
-
Thr
TGT
-
¡û
>C231470074
CP103437
Betaproteobacteria
Methylophilaceae bacterium LSUCC0665 [CP103437]
1145614
1145539
-
Thr
TGT
-
¡û
>C231470108
CP103438
Betaproteobacteria
Methylophilaceae bacterium LSUCC0622 [CP103438]
1162459
1162384
-
Thr
TGT
-
¡û
>C231470142
CP103439
Betaproteobacteria
Methylophilaceae bacterium LSUCC0603 [CP103439]
1169809
1169734
-
Thr
TGT
-
¡û
>C231470176
CP103440
Betaproteobacteria
Methylophilaceae bacterium LSUCC0568 [CP103440]
1167131
1167056
-
Thr
TGT
-
¡û
>C231470210
CP103441
Betaproteobacteria
Methylophilaceae bacterium LSUCC0536 [CP103441]
1114108
1114033
-
Thr
TGT
-
¡û
>C231470244
CP103442
Betaproteobacteria
Methylophilaceae bacterium LSUCC0401 [CP103442]
1133360
1133285
-
Thr
TGT
-
¡û
>C231470278
CP103443
Betaproteobacteria
Methylophilaceae bacterium LSUCC0389 [CP103443]
1130110
1130035
-
Thr
TGT
-
¡û
>C231470313
CP103444
Betaproteobacteria
Methylophilaceae bacterium LSUCC0268 [CP103444]
1123264
1123189
-
Thr
TGT
-
¡û
>C241007136
AP022853
Betaproteobacteria
Sulfurimicrobium lacus skT11 [AP022853]
395112
395187
+
Thr
TGT
-
¡û
>C10109339
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
357226
357301
+
Thr
TGT
[Ensembl]
¡û
>C10109360
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2956225
2956150
-
Thr
TGT
[Ensembl]
¡û
>WENV11100506
AERA01017287
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
14
89
+
Thr
TGT
[ENA]
¡û
>C11114190
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
302660
302735
+
Thr
TGT
[Ensembl]
¡û
>WENV047215
AACY022647211
Marine microbial communities from Global Ocean Sampling (GOS)
538
613
+
Thr
TGT
[ENA]
>C161030818
CP011001
Betaproteobacteria
Methylophilales bacterium MBRSF5 [CP011001]
108058
108133
+
Thr
TGT
[Ensembl]
¡û
>C161030877
CP011002
Betaproteobacteria
Methylophilales bacterium MBRS-H7 [CP011002]
457918
457843
-
Thr
TGT
[Ensembl]
¡û
>C161030911
CP011003
Betaproteobacteria
Methylophilales bacterium MBRSG12 [CP011003]
457918
457843
-
Thr
TGT
[Ensembl]
¡û
>WENV056564
AACY023259512
Marine microbial communities from Global Ocean Sampling (GOS)
930
853
-
Thr
TGT
[ENA]
>WENV058925
AACY023347323
Marine microbial communities from Global Ocean Sampling (GOS)
578
653
+
Thr
TGT
[ENA]
>WENV006639
AACY020177457
Marine microbial communities from Global Ocean Sampling (GOS)
545
470
-
Thr
TGT
[ENA]
>WENV006795
AACY020179772
Marine microbial communities from Global Ocean Sampling (GOS)
78
153
+
Thr
TGT
[ENA]
>WENV074553
AACY023982648
Marine microbial communities from Global Ocean Sampling (GOS)
843
768
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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