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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26283 (66 seq.)
>W1710909675
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
956143
956232
+
Ser
GCT
[ENA]
¡û
>W1711270531
LZEJ01000001
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
44689
44600
-
Ser
GCT
[ENA]
¡û
>W1711486051
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
2928241
2928152
-
Ser
GCT
[ENA]
¡û
>W1711631595
MPRL01000009
Gammaproteobacteria
Solemya pervernicosa gill symbiont gill symbiont [MPRL]
13185
13274
+
Ser
GCT
[ENA]
¡û
>W131180629
ARNG01000083
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
226344
226255
-
Ser
GCT
[ENA]
¡û
>W131225047
AUDG01000035
Gammaproteobacteria
Rheinheimera baltica DSM 14885 [AUDG]
24761
24672
-
Ser
GCT
[ENA]
¡û
>WENV181412427
OGCK01000258
[OGCK] hot springs metagenome; hot spring sediment
2273
2184
-
Ser
GCT
[ENA]
¡û
>WENV181414291
OGCL01000180
[OGCL] hot springs metagenome; Hot spring water
295
206
-
Ser
GCT
[ENA]
¡û
>WENV181837226
OGVK01010056
[OGVK] freshwater metagenome; freshwater
976
1065
+
Ser
GCT
[ENA]
¡û
>WENV181841401
OGVR01023068
[OGVR] freshwater metagenome; freshwater
271
182
-
Ser
GCT
[ENA]
¡û
>WENV181844204
OGVV01020867
[OGVV] freshwater metagenome; freshwater
419
506
+
Ser
GCT
[ENA]
¡û
>WENV183718360
PDWJ01003552
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
11090
11001
-
Ser
GCT
[ENA]
¡û
>WENV170014898
AZIC01003666
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
7246
7335
+
Ser
GCT
[ENA]
¡û
>WENV170314816
CESO01032456
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
24639
24728
+
Ser
GCT
[ENA]
¡û
>WENV170443823
CEUX01019632
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2159
2070
-
Ser
GCT
[ENA]
¡û
>WENV170457954
CEVB01012832
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
418
329
-
Ser
GCT
[ENA]
¡û
>WENV170521184
CEWF01115947
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
636
725
+
Ser
GCT
[ENA]
¡û
>WENV170574185
FLYM01011955
[FLYM] hot springs metagenome; Sediment
408
497
+
Ser
GCT
[ENA]
¡û
>WENV170924016
MDTG01058660
[MDTG] marine metagenome; seawater
157949
157860
-
Ser
GCT
[ENA]
¡û
>WENV170965060
MTET01001413
[MTET] soil metagenome; garden soil control
144896
144807
-
Ser
GCT
[ENA]
¡û
>WENV170966567
MTEX01013856
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
225
136
-
Ser
GCT
[ENA]
¡û
>C191129065
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
964179
964268
+
Ser
GCT
-
¡û
>C191153532
CP037745
Gammaproteobacteria
Rheinheimera sp. D18 [CP037745]
2365198
2365109
-
Ser
GCT
-
¡û
>W09126333
ACJO01000008
Gammaproteobacteria
Halothiobacillus neapolitanus c2 [ACJO]
131410
131499
+
Ser
GCT
[ENA]
¡û
>W1911492726
OBEB01000004
Gammaproteobacteria
Rheinheimera tuosuensis CGMCC 1.12461 [OBEB]
383739
383828
+
Ser
GCT
[ENA]
¡û
>W1911597938
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
120786
120697
-
Ser
GCT
[ENA]
¡û
>W2010158258
CAAJGR010000104
Gammaproteobacteria
Rheinheimera sp. BAL341 [CAAJGR]
19233
19322
+
Ser
GCT
[ENA]
¡û
>W2010613750
JABSOD010000017
Gammaproteobacteria
Rheinheimera sp. YQF-2 [JABSOD]
66482
66571
+
Ser
GCT
[ENA]
¡û
>W2011153677
OBEB01000004
Gammaproteobacteria
Rheinheimera tuosuensis CGMCC 1.12461 [OBEB]
383739
383828
+
Ser
GCT
[ENA]
¡û
>W2011206638
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
120786
120697
-
Ser
GCT
[ENA]
¡û
>W2011484858
RRCF01000001
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
1293192
1293103
-
Ser
GCT
[ENA]
¡û
>W2011520592
RZUF01000010
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
143938
144027
+
Ser
GCT
[ENA]
¡û
>W2011600182
SIRR01000005
Gammaproteobacteria
Rheinheimera pleomorphica PKS7 [SIRR]
284823
284734
-
Ser
GCT
[ENA]
¡û
>W2011647331
SNVZ01000010
Gammaproteobacteria
Halothiobacillus neapolitanus DSM 15147 [SNVZ]
4636
4547
-
Ser
GCT
[ENA]
¡û
>W2012124438
VRLR01000001
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
268419
268330
-
Ser
GCT
[ENA]
¡û
>W2110030088
BMLH01000001
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
583079
583168
+
Ser
GCT
[ENA]
¡û
>W2110049494
BMYR01000008
Gammaproteobacteria
Alishewanella tabrizica KCTC 23723 [BMYR]
234086
234175
+
Ser
GCT
[ENA]
¡û
>W2110051855
BNAO01000002
Gammaproteobacteria
Alishewanella longhuensis CGMCC 1.7003 [BNAO]
442108
442019
-
Ser
GCT
[ENA]
¡û
>W2110416416
JAEINI020000001
Gammaproteobacteria
Alishewanella sp. 16-MA [JAEINI]
385433
385522
+
Ser
GCT
[ENA]
¡û
>W2110444789
JAERPS020000001
Gammaproteobacteria
Rheinheimera sp. MA13 [JAERPS]
134539
134628
+
Ser
GCT
[ENA]
¡û
>W2110445407
JAERQO010000009
Gammaproteobacteria
Rheinheimera sp. MA-13 [JAERQO]
178
89
-
Ser
GCT
[ENA]
¡û
>W2110559665
JAGKQR010000001
Gammaproteobacteria
Rheinheimera sp. GL-53 [JAGKQR]
27289
27200
-
Ser
GCT
[ENA]
¡û
>W2110559726
JAGKQS010000001
Gammaproteobacteria
Rheinheimera sp. GL-15-2-5 [JAGKQS]
27477
27388
-
Ser
GCT
[ENA]
¡û
>W2110562877
JAGPNM010000001
Gammaproteobacteria
Rheinheimera sp. GL-53 [JAGPNM]
27477
27388
-
Ser
GCT
[ENA]
¡û
>W2110641212
JAHRID010000001
Gammaproteobacteria
Rheinheimera sp. SM2107 [JAHRID]
855799
855710
-
Ser
GCT
[ENA]
¡û
>W2110717501
JAJAVQ010000004
Gammaproteobacteria
Rheinheimera aquimaris KCTC 12840 [JAJAVQ]
577425
577514
+
Ser
GCT
[ENA]
¡û
>C231664767
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
907798
907887
+
Ser
GCT
-
¡û
>C10107608
CP001801
Gammaproteobacteria
Halothiobacillus neapolitanus c2 [CP001801]
365792
365881
+
Ser
GCT
[Ensembl]
¡û
>W1511566724
LAHO01000001
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
276096
276185
+
Ser
GCT
[ENA]
¡û
>W1511566811
LAHP01000012
Gammaproteobacteria
Arsukibacterium sp. MJ3 [LAHP]
67225
67314
+
Ser
GCT
[ENA]
¡û
>W1511573506
LAMX01000048
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
17602
17513
-
Ser
GCT
[ENA]
¡û
>W1511584676
LAVS01000001
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
173691
173602
-
Ser
GCT
[ENA]
¡û
>W11162842
AFHI01000002
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
150018
150107
+
Ser
GCT
[ENA]
¡û
>WENV051500
AACY022960030
Marine microbial communities from Global Ocean Sampling (GOS)
5
96
+
Ser
GCT
[ENA]
>C161058492
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2339104
2339193
+
Ser
GCT
-
¡û
>C161058518
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4380175
4380086
-
Ser
GCT
-
¡û
>C161093415
CP016027
Gammaproteobacteria
Halothiobacillus sp. LS2 [CP016027]
2417979
2418068
+
Ser
GCT
[Ensembl]
¡û
>W121040565
AHTH01000045
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
122634
122723
+
Ser
GCT
[ENA]
¡û
>W121087042
AKKU01000012
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
138298
138209
-
Ser
GCT
[ENA]
¡û
>W121104107
ALAB01000005
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
268374
268463
+
Ser
GCT
[ENA]
¡û
>W121124697
BAFK01000013
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
73105
73016
-
Ser
GCT
[ENA]
¡û
>W1610585465
LCWL01000101
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
665
576
-
Ser
GCT
[ENA]
¡û
>W1610768034
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
956143
956232
+
Ser
GCT
[ENA]
¡û
>W1710533921
FNRM01000006
Gammaproteobacteria
Alkalimonas amylolytica [FNRM]
49813
49724
-
Ser
GCT
[ENA]
¡û
>W1710540921
FNXF01000028
Gammaproteobacteria
Rheinheimera pacifica [FNXF]
319
230
-
Ser
GCT
[ENA]
¡û
>W1710704656
LCWL01000101
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
665
576
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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