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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.263418 (105 seq.)
>W1711074096
LSJF01000118
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
7147
7072
-
Lys
TTT
[ENA]
¡û
>W1711074393
LSJM01000272
Alphaproteobacteria
Sphingomonas sp. CCH9-E2 [LSJM]
1545
1620
+
Lys
TTT
[ENA]
¡û
>W1711256889
LYSZ01000005
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
190864
190789
-
Lys
TTT
[ENA]
¡û
>W1711373814
MDVX01000001
Alphaproteobacteria
Neptunicoccus sediminis CY02 [MDVX]
503498
503423
-
Lys
TTT
[ENA]
¡û
>W1711621305
MPCZ01000009
Alphaproteobacteria
Roseobacter sp. MedPE-SWchi [MPCZ]
72204
72129
-
Lys
TTT
[ENA]
¡û
>W1711621350
MPDA01000011
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
66670
66745
+
Lys
TTT
[ENA]
¡û
>w023605
AAXZ01000014
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2150 HTCC2150 [AAXZ]
42680
42757
+
Lys
TTT
[ENA]
¡û
>w013107
AANB01000002
Alphaproteobacteria
Roseobacter sp. MED193 [AANB]
189414
189491
+
Lys
TTT
[ENA]
¡û
>WENV016556
AACY020465447
Marine microbial communities from Global Ocean Sampling (GOS)
2169
2092
-
Lys
TTT
[ENA]
>WENV180100702
OAOS01009767
[OAOS] marine metagenome; ENVO.00002110
395
320
-
Lys
TTT
[ENA]
¡û
>WENV180103688
OAPB01000206
[OAPB] marine metagenome; Sterile flask
3181
3256
+
Lys
TTT
[ENA]
¡û
>WENV180104360
OAPC01003362
[OAPC] marine metagenome; na
111
186
+
Lys
TTT
[ENA]
¡û
>WENV180112980
OAPQ01000004
[OAPQ] marine metagenome; ENVO: 00002149
11167
11242
+
Lys
TTT
[ENA]
¡û
>WENV180113937
OAPR01063210
[OAPR] marine metagenome; seawater
222
147
-
Lys
TTT
[ENA]
¡û
>WENV180208573
OBAJ01003991
[OBAJ] marine metagenome; Coastal water
936
861
-
Lys
TTT
[ENA]
¡û
>WENV180208994
OBAK01003053
[OBAK] marine metagenome; ENVO.00002150
921
996
+
Lys
TTT
[ENA]
¡û
>WENV180214471
OBAP01002797
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
257
182
-
Lys
TTT
[ENA]
¡û
>WENV180362520
OBNX01002314
[OBNX] marine metagenome; ENVO:00002010
432
357
-
Lys
TTT
[ENA]
¡û
>WENV180363695
OBNZ01000408
[OBNZ] marine metagenome; ENVO:00002010
1620
1695
+
Lys
TTT
[ENA]
¡û
>WENV180366963
OBOE01000937
[OBOE] marine metagenome; ENVO:00002010
373
298
-
Lys
TTT
[ENA]
¡û
>WENV180383160
OBOU01004844
[OBOU] marine metagenome; ENV:00002010
780
705
-
Lys
TTT
[ENA]
¡û
>WENV180383950
OBOV01101721
[OBOV] marine metagenome; ENV:00002010
283
358
+
Lys
TTT
[ENA]
¡û
>WENV180386485
OBPC01004144
[OBPC] marine metagenome; Sterile flask
270
195
-
Lys
TTT
[ENA]
¡û
>WENV180387665
OBPF01036711
[OBPF] marine metagenome; Sterile flask
165
90
-
Lys
TTT
[ENA]
¡û
>WENV180387811
OBPG01001947
[OBPG] marine metagenome; Sterile flask
408
333
-
Lys
TTT
[ENA]
¡û
>WENV180388966
OBPI01009991
[OBPI] marine metagenome; Sterile flask
549
624
+
Lys
TTT
[ENA]
¡û
>WENV180389361
OBPJ01006151
[OBPJ] marine metagenome; seawater
363
288
-
Lys
TTT
[ENA]
¡û
>WENV180389984
OBPK01010493
[OBPK] marine metagenome; Sterile flask
694
769
+
Lys
TTT
[ENA]
¡û
>WENV180390531
OBPL01000169
[OBPL] marine metagenome; Sterivex filter
352
277
-
Lys
TTT
[ENA]
¡û
>WENV180391413
OBPN01000578
[OBPN] marine metagenome; seawater
1782
1707
-
Lys
TTT
[ENA]
¡û
>WENV180392236
OBPO01025468
[OBPO] marine metagenome; seawater
350
275
-
Lys
TTT
[ENA]
¡û
>WENV180393166
OBPQ01000757
[OBPQ] marine metagenome; polypropylene bottle
318
243
-
Lys
TTT
[ENA]
¡û
>WENV180394591
OBPS01022560
[OBPS] marine metagenome; ENVO:00002010 seawater
72
-1
-
Lys
TTT
[ENA]
¡û
>WENV180395887
OBPT01221529
[OBPT] marine metagenome; ENVO:00002010 seawater
175
250
+
Lys
TTT
[ENA]
¡û
>WENV180396146
OBPU01047685
[OBPU] marine metagenome; ENVO:00002010
318
243
-
Lys
TTT
[ENA]
¡û
>WENV180396848
OBPW01015003
[OBPW] marine metagenome; seawater
349
424
+
Lys
TTT
[ENA]
¡û
>WENV180399597
OBQO01004014
[OBQO] marine metagenome; ENVO:00002010
669
744
+
Lys
TTT
[ENA]
¡û
>WENV180588034
OCOO01155439
[OCOO] marine metagenome; seawater
175
100
-
Lys
TTT
[ENA]
¡û
>WENV180589920
OCOS01040065
[OCOS] marine metagenome; Sterile flask
369
294
-
Lys
TTT
[ENA]
¡û
>WENV180593037
OCOX01000032
[OCOX] marine metagenome; ENVO:00002010
224
149
-
Lys
TTT
[ENA]
¡û
>WENV180594706
OCPA01001430
[OCPA] marine metagenome; ENVO:00002010
1178
1253
+
Lys
TTT
[ENA]
¡û
>WENV180636414
OCRF01004597
[OCRF] marine metagenome; niskin bottle
280
205
-
Lys
TTT
[ENA]
¡û
>WENV180639067
OCRI01105521
[OCRI] marine metagenome; Sterile flask
116
191
+
Lys
TTT
[ENA]
¡û
>W141065778
AQQY01000004
Alphaproteobacteria
Actibacterium atlanticum 22II-S11-z10 [AQQY]
204862
204787
-
Lys
TTT
[ENA]
¡û
>W141151667
AXBF01000003
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
911499
911574
+
Lys
TTT
[ENA]
¡û
>WENV182545521
OJBN01005016
[OJBN] seawater metagenome; Sea water
251
176
-
Lys
TTT
[ENA]
¡û
>WENV182552326
OJCJ01030123
[OJCJ] seawater metagenome; Sea water
341
266
-
Lys
TTT
[ENA]
¡û
>WENV182553851
OJCR01041309
[OJCR] seawater metagenome; Sea water
624
549
-
Lys
TTT
[ENA]
¡û
>WENV182556649
OJDG01029036
[OJDG] seawater metagenome; Sea water
182
107
-
Lys
TTT
[ENA]
¡û
>WENV182560368
OJDU01000114
[OJDU] seawater metagenome; Sea water
11760
11835
+
Lys
TTT
[ENA]
¡û
>WENV170014558
AYRH01008062
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
274
349
+
Lys
TTT
[ENA]
¡û
>WENV170315287
CESO01095869
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
268
193
-
Lys
TTT
[ENA]
¡û
>WENV170535271
CEWP01040147
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1688
1613
-
Lys
TTT
[ENA]
¡û
>WENV170578485
FUFK010017421
[FUFK] metagenome; unknown
770
695
-
Lys
TTT
[ENA]
¡û
>WENV170584104
FUFK010191523
[FUFK] metagenome; unknown
540
465
-
Lys
TTT
[ENA]
¡û
>WENV170584165
FUFK010197028
[FUFK] metagenome; unknown
556
481
-
Lys
TTT
[ENA]
¡û
>WENV170608423
FUWD010946196
[FUWD] metagenome; unknown
21
96
+
Lys
TTT
[ENA]
¡û
>WENV170668073
LADL02000800
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
5922
5997
+
Lys
TTT
[ENA]
¡û
>WENV170704680
LLEL01034445
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
146
71
-
Lys
TTT
[ENA]
¡û
>WENV170824582
MDSY01078371
[MDSY] marine metagenome; seawater
3785
3710
-
Lys
TTT
[ENA]
¡û
>WENV170836677
MDSZ01135448
[MDSZ] marine metagenome; seawater
608
683
+
Lys
TTT
[ENA]
¡û
>WENV170848307
MDTA01076622
[MDTA] marine metagenome; seawater
57258
57183
-
Lys
TTT
[ENA]
¡û
>WENV170929775
MDTG01155925
[MDTG] marine metagenome; seawater
1515
1590
+
Lys
TTT
[ENA]
¡û
>WENV170937756
MDTG01297326
[MDTG] marine metagenome; seawater
41584
41509
-
Lys
TTT
[ENA]
¡û
>C181068131
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
647502
647427
-
Lys
TTT
-
¡û
>W1910443214
FWFW01000012
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
41770
41845
+
Lys
TTT
[ENA]
¡û
>W1911492656
OBEA01000001
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
705103
705178
+
Lys
TTT
[ENA]
¡û
>W1911539233
OMPQ01000011
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
379807
379882
+
Lys
TTT
[ENA]
¡û
>W1911652529
QBBT01000063
Alphaproteobacteria
Rhodobacteraceae bacterium Lw-13e [QBBT]
37305
37230
-
Lys
TTT
[ENA]
¡û
>W1810101769
PGTD01000017
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
5037
4962
-
Lys
TTT
[ENA]
¡û
>W1810158052
PJCH01000010
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
146009
145934
-
Lys
TTT
[ENA]
¡û
>C151005125
CP003984
Alphaproteobacteria
Planktomarina temperata RCA23 [CP003984]
79552
79477
-
Lys
TTT
[Ensembl]
¡û
>W2010406578
FWFW01000012
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
41770
41845
+
Lys
TTT
[ENA]
¡û
>W2011153607
OBEA01000001
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
705103
705178
+
Lys
TTT
[ENA]
¡û
>W2011169508
OMPQ01000011
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
379807
379882
+
Lys
TTT
[ENA]
¡û
>W2011236001
QBBT01000063
Alphaproteobacteria
Rhodobacteraceae bacterium Lw-13e [QBBT]
37305
37230
-
Lys
TTT
[ENA]
¡û
>W2011453427
RKQK01000004
Alphaproteobacteria
Pacificibacter maritimus DSM 104731 [RKQK]
180355
180430
+
Lys
TTT
[ENA]
¡û
>W2011696415
SULI01000017
Alphaproteobacteria
Pelagicola litoralis CL-ES2 [SULI]
46536
46461
-
Lys
TTT
[ENA]
¡û
>W2110054389
BNCJ01000001
Alphaproteobacteria
Seohaeicola zhoushanensis KCTC 42650 [BNCJ]
53542
53617
+
Lys
TTT
[ENA]
¡û
>W2110599208
JAHEVJ010000008
Alphaproteobacteria
Planktotalea lamellibrachiae DSM 104669 [JAHEVJ]
114196
114121
-
Lys
TTT
[ENA]
¡û
>W2110611411
JAHKPK010000022
Alphaproteobacteria
Pacificibacter marinus F2R14 [JAHKPK]
110196
110121
-
Lys
TTT
[ENA]
¡û
>W2110611845
JAHKPU010000020
Alphaproteobacteria
Pacificibacter marinus D2R04 [JAHKPU]
90768
90693
-
Lys
TTT
[ENA]
¡û
>W2110694479
JAIQXT010000004
Alphaproteobacteria
Sphingomonas sp. R647 [JAIQXT]
44927
44852
-
Lys
TTT
[ENA]
¡û
>C211031011
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
3337763
3337838
+
Lys
TTT
-
¡û
>C211133933
CP060436
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [CP060436]
2675061
2674986
-
Lys
TTT
-
¡û
>C231484852
CP104100
Alphaproteobacteria
Phaeobacter sp. G2 [CP104100]
271858
271933
+
Lys
TTT
-
¡û
>C241250141
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
1173573
1173648
+
Lys
TTT
-
¡û
>C241250188
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
1172825
1172900
+
Lys
TTT
-
¡û
>C241250262
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
4198682
4198607
-
Lys
TTT
-
¡û
>C241250286
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
2114777
2114852
+
Lys
TTT
-
¡û
>WENV036613
AACY021793542
Marine microbial communities from Global Ocean Sampling (GOS)
155
232
+
Lys
TTT
[ENA]
>WENV040088
AACY022059722
Marine microbial communities from Global Ocean Sampling (GOS)
40
115
+
Lys
TTT
[ENA]
>WENV046672
AACY022614919
Marine microbial communities from Global Ocean Sampling (GOS)
559
482
-
Lys
TTT
[ENA]
>WENV055479
AACY023229028
Marine microbial communities from Global Ocean Sampling (GOS)
509
586
+
Lys
TTT
[ENA]
>WENV055862
AACY023241882
Marine microbial communities from Global Ocean Sampling (GOS)
922
999
+
Lys
TTT
[ENA]
>C161038794
CP012023
Alphaproteobacteria
Celeribacter marinus IMCC12053 [CP012023]
1839128
1839203
+
Lys
TTT
[Ensembl]
¡û
>WENV056236
AACY023251625
Marine microbial communities from Global Ocean Sampling (GOS)
176
99
-
Lys
TTT
[ENA]
>WENV056612
AACY023260892
Marine microbial communities from Global Ocean Sampling (GOS)
624
701
+
Lys
TTT
[ENA]
>W1610630907
LIKT01000012
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
74057
73982
-
Lys
TTT
[ENA]
¡û
>W1610913401
LSJF01000118
Alphaproteobacteria
Sphingomonas sp. CCH9-H8 [LSJF]
7147
7072
-
Lys
TTT
[ENA]
¡û
>W1610913698
LSJM01000272
Alphaproteobacteria
Sphingomonas sp. CCH9-E2 [LSJM]
1545
1620
+
Lys
TTT
[ENA]
¡û
>W1611019914
LYSZ01000005
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
190864
190789
-
Lys
TTT
[ENA]
¡û
>W1710529854
FNOI01000002
Alphaproteobacteria
Litoreibacter albidus [FNOI]
690252
690327
+
Lys
TTT
[ENA]
¡û
>W1710543297
FNZV01000012
Alphaproteobacteria
Pacificibacter marinus [FNZV]
55421
55496
+
Lys
TTT
[ENA]
¡û
>W1710567138
FOSM01000010
Alphaproteobacteria
Celeribacter marinus [FOSM]
93164
93089
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK