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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.263527 (39 seq.)
>W131155597
AQOS01000005
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
42165
42090
-
Ala
CGC
[ENA]
¡û
>C025893
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1831791
1831866
+
Ala
CGC
[Ensembl]
¡û
>C025964
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
80983
80908
-
Ala
CGC
[Ensembl]
¡û
>WENV180343581
OBLK01040589
[OBLK] soil metagenome; Clay
146
221
+
Ala
CGC
[ENA]
¡û
>WENV181227466
OFDN01011858
[OFDN] hot springs metagenome; Water
594
519
-
Ala
CGC
[ENA]
¡û
>WENV181412954
OGCK01017783
[OGCK] hot springs metagenome; hot spring sediment
1164
1239
+
Ala
CGC
[ENA]
¡û
>WENV019683
AACY020536805
Marine microbial communities from Global Ocean Sampling (GOS)
534
457
-
Ala
CGC
[ENA]
>WENV170238264
CEQM01126965
[CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
145
70
-
Ala
CGC
[ENA]
¡û
>WENV170248403
CEQQ01127204
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17162
17087
-
Ala
CGC
[ENA]
¡û
>WENV170958345
MKWU01000886
[MKWU] sponge metagenome;
40552
40477
-
Ala
CGC
[ENA]
¡û
>C191190026
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1365007
1364932
-
Ala
CGC
-
¡û
>W2010103174
BJXN01000001
Deinococcota
Oceanithermus desulfurans NBRC 100063 [BJXN]
106333
106408
+
Ala
CGC
[ENA]
¡û
>W2010699410
JACHEZ010000005
Deinococcota
Oceanithermus desulfurans DSM 15757 [JACHEZ]
47417
47492
+
Ala
CGC
[ENA]
¡û
>W2012029940
VHHQ01000013
Deinococcota
Thermus thermophilus IB-21 [VHHQ]
1012
937
-
Ala
CGC
[ENA]
¡û
>C201003971
AP019792
Deinococcota
Thermus thermophilus AA2-20 [AP019792]
300811
300886
+
Ala
CGC
-
¡û
>C201004019
AP019794
Deinococcota
Thermus thermophilus AA2-29 [AP019794]
300789
300864
+
Ala
CGC
-
¡û
>C211017788
AP024270
Deinococcota
Thermus thermophilus HB5018 [AP024270]
287779
287854
+
Ala
CGC
-
¡û
>C211017918
AP024301
Deinococcota
Thermus thermophilus HB5002 [AP024301]
276683
276758
+
Ala
CGC
-
¡û
>C211017966
AP024305
Deinococcota
Thermus thermophilus HB5008 [AP024305]
276683
276758
+
Ala
CGC
-
¡û
>C211028091
AP024926
Deinococcota
Thermus thermophilus AA1-1 [AP024926]
307449
307524
+
Ala
CGC
-
¡û
>C211028138
AP024929
Deinococcota
Thermus thermophilus AA2-2 [AP024929]
318200
318275
+
Ala
CGC
-
¡û
>C211028185
AP024933
Deinococcota
Thermus thermophilus AA3-7 [AP024933]
321435
321510
+
Ala
CGC
-
¡û
>C211028232
AP024937
Deinococcota
Thermus thermophilus AK1 [AP024937]
304931
305006
+
Ala
CGC
-
¡û
>C211028791
AP024984
Deinococcota
Thermus thermophilus JCM10941 [AP024984]
82641
82566
-
Ala
CGC
-
¡û
>C211395043
CP082323
Deinococcota
Thermus thermophilus N-1 [CP082323]
82571
82496
-
Ala
CGC
-
¡û
>C231017283
AP025596
Deinococcota
Thermus thermophilus SNM1-1 [AP025596]
301445
301520
+
Ala
CGC
-
¡û
>C231017331
AP025603
Deinococcota
Thermus thermophilus SNM1-7 [AP025603]
308269
308344
+
Ala
CGC
-
¡û
>C231017378
AP025609
Deinococcota
Thermus thermophilus SNM3-3 [AP025609]
285224
285299
+
Ala
CGC
-
¡û
>C231017447
AP025613
Deinococcota
Thermus thermophilus SNM6-6 [AP025613]
1644007
1643932
-
Ala
CGC
-
¡û
>C231017494
AP025617
Deinococcota
Thermus thermophilus SNM7-6 [AP025617]
1599694
1599619
-
Ala
CGC
-
¡û
>C241002738
AP019801
Deinococcota
Thermus thermophilus HC11 [AP019801]
307612
307687
+
Ala
CGC
-
¡û
>C241008377
AP025540
Deinococcota
Thermus thermophilus HB8_001 [AP025540]
82641
82566
-
Ala
CGC
-
¡û
>C241307748
CP133179
Deinococcota
Thermus thermophilus HB27 [CP133179]
1832838
1832913
+
Ala
CGC
-
¡û
>C11116331
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
1820481
1820406
-
Ala
CGC
[Ensembl]
¡û
>C11123177
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
287593
287668
+
Ala
CGC
[Ensembl]
¡û
>C121009746
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1656359
1656284
-
Ala
CGC
[Ensembl]
¡û
>C161067103
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1694728
1694653
-
Ala
CGC
[Ensembl]
¡û
>W121056019
AIJQ01000002
Deinococcota
Thermus parvatiensis RL [AIJQ]
243430
243505
+
Ala
CGC
[ENA]
¡û
>W1710514643
FNBC01000006
Deinococcota
Thermus arciformis [FNBC]
1471
1396
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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