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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26410 (32 seq.)
>W1710914761
LNTU01000012
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
181350
181261
-
Ser
TGA
[ENA]
¡û
>W131170987
ARFW01000016
Alphaproteobacteria
Ahrensia kielensis DSM 5890 [ARFW]
469366
469277
-
Ser
TGA
[ENA]
¡û
>C171083589
CP018782
Alphaproteobacteria
Brucella pituitosa AA2 [CP018779, CP018780, CP018782]
99708
99619
-
Ser
TGA
-
¡û
>C171092439
CP019346
Alphaproteobacteria
Brucella sp. 09RB8471 [CP019346, CP019347]
854263
854174
-
Ser
TGA
-
¡û
>C171092691
CP019391
Alphaproteobacteria
Brucella sp. 09RB8910 [CP019390, CP019391]
822670
822759
+
Ser
TGA
-
¡û
>W141041484
AMCC01000073
Alphaproteobacteria
Brucella anthropi 60a [AMCC]
4125
4036
-
Ser
TGA
[ENA]
¡û
>WENV183731226
PJTS01022568
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
537
448
-
Ser
TGA
[ENA]
¢þ
>WENV183733855
PJTY01037809
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
154
243
+
Ser
TGA
[ENA]
¢þ
>W09116993
ACBQ01000064
Alphaproteobacteria
Brucella sp. 83/13 [ACBQ]
13367
13456
+
Ser
TGA
[ENA]
¡û
>C191226855
LT599048
Alphaproteobacteria
Brucella sp. 10RB9215 [LT599047, LT599048]
540252
540163
-
Ser
TGA
-
¡û
>W141564613
JIAX01000009
Alphaproteobacteria
Ahrensia sp. 13_GOM-1096m [JIAX]
8427
8516
+
Ser
TGA
[ENA]
¡û
>W1910620051
LKAD01000013
Alphaproteobacteria
Ochrobactrum sp. DDT2 [LKAD]
613722
613811
+
Ser
TGA
[ENA]
¡û
>W1910645915
LWHH01000002
Alphaproteobacteria
Ochrobactrum sp. 3-3 [LWHH]
414756
414845
+
Ser
TGA
[ENA]
¡û
>W1911084433
NNRL01000147
Alphaproteobacteria
Brucella grignonensis OgA9a [NNRL]
122151
122062
-
Ser
TGA
[ENA]
¡û
>W1911565596
PCOD01000005
Alphaproteobacteria
Brucella pseudogrignonensis MYb70 [PCOD]
82119
82030
-
Ser
TGA
[ENA]
¡û
>W1911565630
PCOE01000003
Alphaproteobacteria
Ochrobactrum sp. MYb68 [PCOE]
696136
696047
-
Ser
TGA
[ENA]
¡û
>W1911565735
PCOG01000002
Alphaproteobacteria
Brucella pseudogrignonensis MYb58 [PCOG]
607289
607378
+
Ser
TGA
[ENA]
¡û
>W1911565828
PCOI01000002
Alphaproteobacteria
Ochrobactrum sp. MYb49 [PCOI]
958002
958091
+
Ser
TGA
[ENA]
¡û
>W1911565911
PCOK01000005
Alphaproteobacteria
Brucella pseudogrignonensis MYb37 [PCOK]
82119
82030
-
Ser
TGA
[ENA]
¡û
>W1911565993
PCOM01000002
Alphaproteobacteria
Ochrobactrum sp. MYb19 [PCOM]
686764
686675
-
Ser
TGA
[ENA]
¡û
>W1911566115
PCOO01000002
Alphaproteobacteria
Ochrobactrum sp. MYb15 [PCOO]
741131
741042
-
Ser
TGA
[ENA]
¡û
>W1911566152
PCOP01000003
Alphaproteobacteria
Ochrobactrum sp. MYb14 [PCOP]
686764
686675
-
Ser
TGA
[ENA]
¡û
>W1911566258
PCOR01000002
Alphaproteobacteria
Brucella thiophenivorans MYb6 [PCOR]
261114
261203
+
Ser
TGA
[ENA]
¡û
>W1911765473
QXCX01000002
Alphaproteobacteria
Brucella haematophila L1Suc [QXCX]
1166929
1166840
-
Ser
TGA
[ENA]
¡û
>W10112494
ADFB01000088
Alphaproteobacteria
Brucella sp. NF 2653 [ADFB]
58832
58743
-
Ser
TGA
[ENA]
¡û
>W11115715
ADFB01000088
Alphaproteobacteria
Brucella sp. NF 2653 [ADFB]
58832
58743
-
Ser
TGA
[ENA]
¡û
>C161090720
CP015775
Alphaproteobacteria
Brucella pseudogrignonensis K8 [CP015775, CP015776]
2832412
2832501
+
Ser
TGA
[Ensembl]
¡û
>C161108464
LN997864
Alphaproteobacteria
Brucella vulpis F60 [LN997863, LN997864]
93549
93460
-
Ser
TGA
-
¡û
>W121055796
AIII01000009
Alphaproteobacteria
Brucella anthropi CTS-325 [AIII]
126377
126288
-
Ser
TGA
[ENA]
¡û
>W1610550536
JXMU01000011
Alphaproteobacteria
Ahrensia marina [JXMU]
97756
97845
+
Ser
TGA
[ENA]
¡û
>W1610773120
LNTU01000012
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
181350
181261
-
Ser
TGA
[ENA]
¡û
>W1710660299
JXMU01000011
Alphaproteobacteria
Ahrensia marina [JXMU]
97756
97845
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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