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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264150 (10 seq.)
>WENV180365988
OBOC01088994
[OBOC] marine metagenome; ocean water
251
177
-
Lys
TTT
[ENA]
¡û
>WENV180380175
OBOQ01008623
[OBOQ] marine metagenome; Fridge
471
545
+
Lys
TTT
[ENA]
¡û
>WENV170161661
CEOK01379090
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3507
3432
-
Lys
TTT
[ENA]
¡û
>WENV170328329
CESV01005025
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
94
166
+
Lys
TTT
[ENA]
¡û
>WENV170411058
CEUJ01158727
[CEUJ] marine metagenome genome assembly TARA_125_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
55
129
+
Lys
TTT
[ENA]
¡û
>WENV170442839
CEUW01076447
[CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
25
99
+
Lys
TTT
[ENA]
¡û
>WENV170610792
FUWD012055410
[FUWD] metagenome; unknown
265
190
-
Lys
TTT
[ENA]
¡û
>WENV170863802
MDTB01096248
[MDTB] marine metagenome; seawater
882
957
+
Lys
TTT
[ENA]
¡û
>WENV170937453
MDTG01292201
[MDTG] marine metagenome; seawater
2628
2700
+
Lys
TTT
[ENA]
¡û
>WENV034087
AACY021578241
Marine microbial communities from Global Ocean Sampling (GOS)
414
339
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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