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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26417 (112 seq.)
>W131217510
ATWW01000017
Actinomycetota
Bifidobacterium pseudolongum AGR2145 [ATWW]
22253
22342
+
Ser
GCT
[ENA]
¡û
>W131232730
AUJM01000011
Actinomycetota
Bifidobacterium sp. AGR2158 [AUJM]
489072
488983
-
Ser
GCT
[ENA]
¡û
>W131223965
AUCL01000001
Actinomycetota
Bifidobacterium tsurumiense DSM 17777 [AUCL]
85519
85432
-
Ser
GCT
[ENA]
¡û
>WENV181251458
OFFO01011263
[OFFO] mouse gut metagenome; faeces
523
436
-
Ser
GCT
[ENA]
¡û
>WENV181253701
OFFQ01031875
[OFFQ] mouse gut metagenome; faeces
472
559
+
Ser
GCT
[ENA]
¡û
>WENV181255682
OFFS01015545
[OFFS] mouse gut metagenome; faeces
407
494
+
Ser
GCT
[ENA]
¡û
>WENV181268686
OFGD01041765
[OFGD] mouse gut metagenome; faeces
311
224
-
Ser
GCT
[ENA]
¡û
>WENV181273444
OFGH01001988
[OFGH] mouse gut metagenome; faeces
10251
10164
-
Ser
GCT
[ENA]
¡û
>WENV181300945
OFHN01015498
[OFHN] mouse gut metagenome; faeces
1338
1425
+
Ser
GCT
[ENA]
¡û
>W141169159
AXVO01000014
Actinomycetota
Bifidobacterium choerinum DSM 20434 [AXVO]
107373
107284
-
Ser
GCT
[ENA]
¡û
>WENV183182271
OLPK01000111
[OLPK] human gut metagenome; faeces
60936
61023
+
Ser
GCT
[ENA]
¡û
>WENV183548823
OOAY01002010
[OOAY] human gut metagenome; human gut
2010
2097
+
Ser
GCT
[ENA]
¡û
>C181027189
CP017695
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [CP017695]
1785912
1785825
-
Ser
GCT
-
¡û
>C181030122
CP018044
Actinomycetota
Bifidobacterium choerinum FMB-1 [CP018044]
1122968
1123057
+
Ser
GCT
-
¡û
>C181068141
CP022544
Actinomycetota
Bifidobacterium pseudolongum UMB-MBP-01 [CP022544]
442937
443024
+
Ser
GCT
-
¡û
>W141524066
JGYU01000003
Actinomycetota
Bifidobacterium choerinum [JGYU]
143783
143872
+
Ser
GCT
[ENA]
¡û
>W141524668
JGZG01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
661051
660962
-
Ser
GCT
[ENA]
¡û
>W141524700
JGZH01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum [JGZH]
30468
30557
+
Ser
GCT
[ENA]
¡û
>W141559166
JHWN01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JHWN]
42553
42642
+
Ser
GCT
[ENA]
¡û
>W1910814833
MVOG01000003
Actinomycetota
Bifidobacterium sp. 70 [MVOG]
41598
41510
-
Ser
GCT
[ENA]
¡û
>W1910814889
MVOH01000006
Actinomycetota
Bifidobacterium sp. 71 [MVOH]
388494
388405
-
Ser
GCT
[ENA]
¡û
>W1911079606
NMYC01000005
Actinomycetota
Bifidobacterium sp. 72 [NMYC]
563378
563467
+
Ser
GCT
[ENA]
¡û
>W1911768223
QXGI01000011
Actinomycetota
Bifidobacterium sp. 2020B [QXGI]
31615
31526
-
Ser
GCT
[ENA]
¡û
>W1810049138
PCGZ01000009
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1524B [PCGZ]
34951
34864
-
Ser
GCT
[ENA]
¡û
>W1810049159
PCHA01000016
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1747B [PCHA]
61431
61518
+
Ser
GCT
[ENA]
¡û
>W1810049212
PCHB01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1744B [PCHB]
1041
954
-
Ser
GCT
[ENA]
¡û
>W1810049265
PCHC01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1619B [PCHC]
94602
94689
+
Ser
GCT
[ENA]
¡û
>W1810049318
PCHD01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1734B [PCHD]
117549
117636
+
Ser
GCT
[ENA]
¡û
>W1810049351
PCHD01000016
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1734B [PCHD]
2569
2482
-
Ser
GCT
[ENA]
¡û
>W1810049368
PCHE01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1691B [PCHE]
932
845
-
Ser
GCT
[ENA]
¡û
>W1810049446
PCHF01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1595B [PCHF]
265512
265599
+
Ser
GCT
[ENA]
¡û
>W1810049470
PCHG01000009
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1549B [PCHG]
126719
126806
+
Ser
GCT
[ENA]
¡û
>W1810049520
PCHH01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1520B [PCHH]
563425
563512
+
Ser
GCT
[ENA]
¡û
>W1810049572
PCHI01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1370B [PCHI]
323301
323388
+
Ser
GCT
[ENA]
¡û
>W1810813796
QRZV01000001
Actinomycetota
Bifidobacterium pseudolongum AF13-3LB [QRZV]
478518
478605
+
Ser
GCT
[ENA]
¡û
>C151024227
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
473643
473732
+
Ser
GCT
[Ensembl]
¡û
>W2010282419
CABMIQ010000001
Actinomycetota
Bifidobacterium pseudolongum [CABMIQ]
473643
473730
+
Ser
GCT
[ENA]
¡û
>W2010328972
CACWHR010000225
Bacillota
Ruminococcaceae bacterium [CACWHR]
299
212
-
Ser
GCT
[ENA]
¡û
>W2010917842
MVOG01000003
Actinomycetota
Bifidobacterium sp. 70 [MVOG]
41598
41510
-
Ser
GCT
[ENA]
¡û
>W2010917898
MVOH01000006
Actinomycetota
Bifidobacterium sp. 71 [MVOH]
388494
388405
-
Ser
GCT
[ENA]
¡û
>W2011005877
NMYC01000005
Actinomycetota
Bifidobacterium sp. 72 [NMYC]
563378
563467
+
Ser
GCT
[ENA]
¡û
>W2011325818
QXGI01000011
Actinomycetota
Bifidobacterium sp. 2020B [QXGI]
31615
31526
-
Ser
GCT
[ENA]
¡û
>W2011338360
QXXI01000008
Actinomycetota
Bifidobacterium pseudolongum 22-20 [QXXI]
36528
36441
-
Ser
GCT
[ENA]
¡û
>W2011366098
RAYV01000002
Actinomycetota
Bifidobacterium pseudolongum WYJ21-P61 [RAYV]
121975
121888
-
Ser
GCT
[ENA]
¡û
>W2011506269
RYTX01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 112206 [RYTX]
170681
170768
+
Ser
GCT
[ENA]
¡û
>W2011506313
RYTY01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 102017 [RYTY]
57293
57380
+
Ser
GCT
[ENA]
¡û
>W2011506358
RYTZ01000007
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 102015 [RYTZ]
57266
57353
+
Ser
GCT
[ENA]
¡û
>W2011506400
RYUA01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 22511 [RYUA]
93864
93951
+
Ser
GCT
[ENA]
¡û
>W2011506447
RYUB01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 22506 [RYUB]
162832
162919
+
Ser
GCT
[ENA]
¡û
>W2011506499
RYUC01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2115B [RYUC]
252103
252190
+
Ser
GCT
[ENA]
¡û
>W2011506544
RYUD01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2114B [RYUD]
558310
558397
+
Ser
GCT
[ENA]
¡û
>W2011506594
RYUE01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2113B [RYUE]
94562
94649
+
Ser
GCT
[ENA]
¡û
>W2011506642
RYUF01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2105B [RYUF]
168255
168342
+
Ser
GCT
[ENA]
¡û
>W2011506690
RYUG01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2098B [RYUG]
365578
365665
+
Ser
GCT
[ENA]
¡û
>W2011506741
RYUH01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2093B [RYUH]
98812
98899
+
Ser
GCT
[ENA]
¡û
>W2011506789
RYUI01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2089B [RYUI]
551538
551625
+
Ser
GCT
[ENA]
¡û
>W2011506837
RYUJ01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2088B [RYUJ]
361475
361562
+
Ser
GCT
[ENA]
¡û
>W2011506888
RYUK01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2086B [RYUK]
94632
94719
+
Ser
GCT
[ENA]
¡û
>W2011506940
RYUL01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2083B [RYUL]
94696
94783
+
Ser
GCT
[ENA]
¡û
>W2011506987
RYUM01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2071B [RYUM]
63531
63618
+
Ser
GCT
[ENA]
¡û
>W2011507044
RYUN01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 2054B [RYUN]
223514
223601
+
Ser
GCT
[ENA]
¡û
>W2011507089
RYUO01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2049B [RYUO]
502771
502858
+
Ser
GCT
[ENA]
¡û
>W2011507144
RYUP01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2048B [RYUP]
494976
495063
+
Ser
GCT
[ENA]
¡û
>W2011507199
RYUQ01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2032B [RYUQ]
25659
25746
+
Ser
GCT
[ENA]
¡û
>W2011507244
RYUR01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2029B [RYUR]
587801
587888
+
Ser
GCT
[ENA]
¡û
>W2011507294
RYUS01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2019B [RYUS]
95379
95466
+
Ser
GCT
[ENA]
¡û
>W2011507342
RYUT01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2017B [RYUT]
502771
502858
+
Ser
GCT
[ENA]
¡û
>W2011507451
RYUV01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2004B [RYUV]
160962
161049
+
Ser
GCT
[ENA]
¡û
>W2011507500
RYUW01000008
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2003B [RYUW]
60979
61066
+
Ser
GCT
[ENA]
¡û
>W2011507555
RYUX01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2002B [RYUX]
60979
61066
+
Ser
GCT
[ENA]
¡û
>W2011507601
RYUY01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2001B [RYUY]
490986
491073
+
Ser
GCT
[ENA]
¡û
>W2011507653
RYUZ01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2000B [RYUZ]
157125
157212
+
Ser
GCT
[ENA]
¡û
>W2011507699
RYVA01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1805B [RYVA]
576440
576527
+
Ser
GCT
[ENA]
¡û
>W2011507751
RYVB01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1791B [RYVB]
60774
60861
+
Ser
GCT
[ENA]
¡û
>W2011507803
RYVC01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1780B [RYVC]
144050
144137
+
Ser
GCT
[ENA]
¡û
>W2011507851
RYVD01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1770B [RYVD]
521563
521650
+
Ser
GCT
[ENA]
¡û
>W2011507909
RYVE01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1629B [RYVE]
478094
478181
+
Ser
GCT
[ENA]
¡û
>W2011507959
RYVF01000004
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1616B [RYVF]
56342
56429
+
Ser
GCT
[ENA]
¡û
>W2011508007
RYVG01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1612B [RYVG]
485184
485271
+
Ser
GCT
[ENA]
¡û
>W2011508056
RYVH01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1604B [RYVH]
484344
484431
+
Ser
GCT
[ENA]
¡û
>W2011508109
RYVI01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1578B [RYVI]
228293
228380
+
Ser
GCT
[ENA]
¡û
>W2011508158
RYVJ01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1565B [RYVJ]
126322
126409
+
Ser
GCT
[ENA]
¡û
>W2011508203
RYVK01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1550B [RYVK]
536027
536114
+
Ser
GCT
[ENA]
¡û
>W2011508256
RYVL01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1546B [RYVL]
126321
126408
+
Ser
GCT
[ENA]
¡û
>W2011508301
RYVM01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1513B [RYVM]
481622
481709
+
Ser
GCT
[ENA]
¡û
>W2011508349
RYVN01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1511B [RYVN]
411275
411362
+
Ser
GCT
[ENA]
¡û
>W2011532360
SBKS01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2109B [SBKS]
255767
255854
+
Ser
GCT
[ENA]
¡û
>W2011532408
SBKT01000008
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2103B [SBKT]
91828
91915
+
Ser
GCT
[ENA]
¡û
>W2011532453
SBKU01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2072B [SBKU]
349239
349326
+
Ser
GCT
[ENA]
¡û
>W2011532507
SBKV01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2023B [SBKV]
228413
228500
+
Ser
GCT
[ENA]
¡û
>W2011532557
SBKW01000007
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 2012B [SBKW]
19931
20018
+
Ser
GCT
[ENA]
¡û
>W2011532606
SBKX01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1678B [SBKX]
163994
164081
+
Ser
GCT
[ENA]
¡û
>W2011532647
SBKY01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1655B [SBKY]
163994
164081
+
Ser
GCT
[ENA]
¡û
>W2011532704
SBKZ01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1577B [SBKZ]
228314
228401
+
Ser
GCT
[ENA]
¡û
>W2011692450
SSTF01000027
Actinomycetota
Bifidobacterium pseudolongum NM87_A27A [SSTF]
24684
24771
+
Ser
GCT
[ENA]
¡û
>W2012153759
VULW01000001
Actinomycetota
Bifidobacterium tsurumiense BSM-380-WT-2B [VULW]
626771
626684
-
Ser
GCT
[ENA]
¡û
>W2110124827
CAJTCO010000011
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [CAJTCO]
61187
61274
+
Ser
GCT
[ENA]
¡û
>W2110482531
JAFEJV010000002
Actinomycetota
Bifidobacterium felsineum CP4 [JAFEJV]
242401
242313
-
Ser
GCT
[ENA]
¡û
>C211407600
CP084312
Actinomycetota
Bifidobacterium pseudolongum 46-D-2 [CP084312]
1786029
1785942
-
Ser
GCT
-
¡û
>C211407649
CP084313
Actinomycetota
Bifidobacterium pseudolongum 46-E-1 [CP084313]
1785991
1785904
-
Ser
GCT
-
¡û
>C211407698
CP084314
Actinomycetota
Bifidobacterium pseudolongum 49-D-6 [CP084314]
1786009
1785922
-
Ser
GCT
-
¡û
>C231123874
CP071805
Actinomycetota
Bifidobacterium pseudolongum NjM1 [CP071805]
113538
113451
-
Ser
GCT
-
¡û
>C231205674
CP085326
Actinomycetota
Bifidobacterium pseudolongum 46-D-6 [CP085326]
1785966
1785879
-
Ser
GCT
-
¡û
>W1610058882
BCAE01000064
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
7875
7964
+
Ser
GCT
[ENA]
¡û
>W1610518995
JDTV01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
230576
230487
-
Ser
GCT
[ENA]
¡û
>W1610519177
JDTZ01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
431361
431272
-
Ser
GCT
[ENA]
¡û
>W1610519626
JDUJ01000010
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
3549
3638
+
Ser
GCT
[ENA]
¡û
>W1710055641
BCAE01000064
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
7875
7964
+
Ser
GCT
[ENA]
¡û
>W1710614450
JDTV01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
230576
230487
-
Ser
GCT
[ENA]
¡û
>W1710614632
JDTZ01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
431361
431272
-
Ser
GCT
[ENA]
¡û
>W1710614673
JDUA01000004
Actinomycetota
Bifidobacterium minimum DSM 20102 [JDUA]
125678
125767
+
Ser
GCT
[ENA]
¡û
>W1710615081
JDUJ01000010
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
3549
3638
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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