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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264264 (103 seq.)
>W1710786291
LJIV01000016
Bacillota
Leuconostoc lactis [LJIV]
3416
3342
-
Ala
TGC
[ENA]
¡û
>W1710817682
LKLZ01000004
Bacillota
Lactiplantibacillus plantarum WJL [LKLZ]
405
331
-
Ala
TGC
[ENA]
¡û
>W1711132327
LUWB01000017
Bacillota
Lactiplantibacillus plantarum [LUWB]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711132447
LUWD01000025
Bacillota
Lactiplantibacillus plantarum [LUWD]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711132496
LUWE01000004
Bacillota
Lactiplantibacillus plantarum [LUWE]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711133091
LUWO01000017
Bacillota
Lactiplantibacillus plantarum [LUWO]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711133676
LUWX01000180
Bacillota
Lactiplantibacillus plantarum [LUWX]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711133834
LUXA01000029
Bacillota
Lactiplantibacillus plantarum [LUXA]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711134119
LUXF01000027
Bacillota
Lactiplantibacillus plantarum [LUXF]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711134256
LUXH01000145
Bacillota
Lactiplantibacillus plantarum [LUXH]
173
99
-
Ala
TGC
[ENA]
¡û
>W1711134513
LUXL01000034
Bacillota
Lactiplantibacillus plantarum [LUXL]
160624
160550
-
Ala
TGC
[ENA]
¡û
>W1711485624
MKEB01000094
Bacillota
Lactiplantibacillus plantarum [MKEB]
1786
1860
+
Ala
TGC
[ENA]
¡û
>W1711617529
MPAN01000076
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
3412
3338
-
Ala
TGC
[ENA]
¡û
>W1711624804
MPHN01000001
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
137351
137425
+
Ala
TGC
[ENA]
¡û
>C171037155
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
24584
24658
+
Ala
TGC
-
¡û
>C171037170
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
137739
137813
+
Ala
TGC
-
¡û
>C171037204
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
1777487
1777413
-
Ala
TGC
-
¡û
>C171037211
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
1645465
1645391
-
Ala
TGC
-
¡û
>C171113816
CP020861
Bacillota
Lactiplantibacillus plantarum JBE490 [CP020861]
481277
481351
+
Ala
TGC
-
¡û
>C171113832
CP020861
Bacillota
Lactiplantibacillus plantarum JBE490 [CP020861]
1105812
1105886
+
Ala
TGC
-
¡û
>WENV180314997
OBKH01001696
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
3
78
+
Ala
TGC
[ENA]
¢þ
>WENV180566383
OCLI01001866
[OCLI] human gut metagenome; human gut
261
335
+
Ala
TGC
[ENA]
¢þ
>WENV181097965
OECA01051223
[OECA] human metagenome; G_DNA_Tongue dorsum
456
528
+
Ala
TGC
[ENA]
¢þ
>W141244876
CAKV01000003
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
3390
3316
-
Ala
TGC
[ENA]
¡û
>W141292142
JAUI01000054
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
1915
1989
+
Ala
TGC
[ENA]
¡û
>WENV183514327
OMKS01016156
[OMKS] sediment metagenome; hot spring sediment
3504
3429
-
Ala
TGC
[ENA]
¢þ
>WENV183516526
OMKS01197430
[OMKS] sediment metagenome; hot spring sediment
193
120
-
Ala
TGC
[ENA]
¢þ
>WENV170623911
FUWD013172662
[FUWD] metagenome; unknown
824
749
-
Ala
TGC
[ENA]
¢þ
>WENV170632201
FUWD013379340
[FUWD] metagenome; unknown
824
749
-
Ala
TGC
[ENA]
¢þ
>WENV170660184
JXWT01023923
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
766
691
-
Ala
TGC
[ENA]
¢þ
>WENV170679326
LDZU01009997
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1839
1912
+
Ala
TGC
[ENA]
¢þ
>C181045204
CP020564
Bacillota
Lactiplantibacillus plantarum GB-LP1 [CP020564]
471874
471948
+
Ala
TGC
-
¡û
>C181045220
CP020564
Bacillota
Lactiplantibacillus plantarum GB-LP1 [CP020564]
1058171
1058245
+
Ala
TGC
-
¡û
>C181116808
CP025412
Bacillota
Lactiplantibacillus plantarum X7021 [CP025412]
482782
482856
+
Ala
TGC
-
¡û
>C181116823
CP025412
Bacillota
Lactiplantibacillus plantarum X7021 [CP025412]
1078127
1078201
+
Ala
TGC
-
¡û
>C181119763
CP025590
Bacillota
Lactiplantibacillus plantarum K259 [CP025590]
204368
204442
+
Ala
TGC
-
¡û
>C181119779
CP025590
Bacillota
Lactiplantibacillus plantarum K259 [CP025590]
896133
896207
+
Ala
TGC
-
¡û
>C191031504
CP025285
Bacillota
Lactiplantibacillus plantarum subsp. plantarum nF1-FD [CP025285]
1119087
1119161
+
Ala
TGC
-
¡û
>C191094245
CP032751
Bacillota
Lactiplantibacillus argentoratensis DSM 16365 [CP032751]
511119
511193
+
Ala
TGC
-
¡û
>C191094260
CP032751
Bacillota
Lactiplantibacillus argentoratensis DSM 16365 [CP032751]
1082085
1082159
+
Ala
TGC
-
¡û
>C191129277
CP034694
Bacillota
Lactiplantibacillus plantarum FBL-3a [CP034694]
2064325
2064251
-
Ala
TGC
-
¡û
>C191129292
CP034694
Bacillota
Lactiplantibacillus plantarum FBL-3a [CP034694]
1453478
1453404
-
Ala
TGC
-
¡û
>C191136367
CP035168
Bacillota
Lactiplantibacillus plantarum SRCM103418 [CP035168]
2707123
2707049
-
Ala
TGC
-
¡û
>C191136382
CP035168
Bacillota
Lactiplantibacillus plantarum SRCM103418 [CP035168]
2099676
2099602
-
Ala
TGC
-
¡û
>C191137253
CP035223
Bacillota
Lactiplantibacillus plantarum SRCM103472 [CP035223]
2792576
2792502
-
Ala
TGC
-
¡û
>C191137271
CP035223
Bacillota
Lactiplantibacillus plantarum SRCM103472 [CP035223]
2121043
2120969
-
Ala
TGC
-
¡û
>W09127281
ACKV01000113
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
3412
3338
-
Ala
TGC
[ENA]
¡û
>W1910015492
BDOR01000078
Bacillota
Lactiplantibacillus paraplantarum D2-1 [BDOR]
396
470
+
Ala
TGC
[ENA]
¡û
>W1910695958
MECY01000008
Bacillota
Lactiplantibacillus paraplantarum Lp109 [MECY]
302
376
+
Ala
TGC
[ENA]
¡û
>W1910797613
MSUB01000077
Bacillota
Lactiplantibacillus plantarum E6-4 [MSUB]
96
22
-
Ala
TGC
[ENA]
¡û
>W1910797725
MSUD01000079
Bacillota
Lactiplantibacillus plantarum E6-6 [MSUD]
96
22
-
Ala
TGC
[ENA]
¡û
>W1910798272
MSUN01000118
Bacillota
Lactiplantibacillus plantarum A1-1 [MSUN]
96
22
-
Ala
TGC
[ENA]
¡û
>W1910798935
MSVA01000136
Bacillota
Lactiplantibacillus plantarum A7-2 [MSVA]
114
188
+
Ala
TGC
[ENA]
¡û
>W1910799245
MSVG01000141
Bacillota
Lactiplantibacillus plantarum B2-2 [MSVG]
114
188
+
Ala
TGC
[ENA]
¡û
>W1910799804
MSVR01000153
Bacillota
Lactiplantibacillus plantarum B14-1 [MSVR]
114
188
+
Ala
TGC
[ENA]
¡û
>W1910800476
MSWE01000138
Bacillota
Lactiplantibacillus plantarum R2.3.2 [MSWE]
96
22
-
Ala
TGC
[ENA]
¡û
>W1910801494
MSWY01000126
Bacillota
Lactiplantibacillus plantarum R6.2.1 [MSWY]
96
22
-
Ala
TGC
[ENA]
¡û
>W1910801954
MSXH01000144
Bacillota
Lactiplantibacillus plantarum R14.1.2 [MSXH]
114
188
+
Ala
TGC
[ENA]
¡û
>W1910821975
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
1164365
1164439
+
Ala
TGC
[ENA]
¡û
>W1910821984
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
1375040
1375114
+
Ala
TGC
[ENA]
¡û
>W1910821989
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
911334
911260
-
Ala
TGC
[ENA]
¡û
>W1910822005
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
821232
821158
-
Ala
TGC
[ENA]
¡û
>W1910990364
NKRH01000034
Bacillota
Lactiplantibacillus plantarum 8 PA 3 [NKRH]
223
149
-
Ala
TGC
[ENA]
¡û
>W1911495507
OBMW01000046
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
1979
2053
+
Ala
TGC
[ENA]
¡û
>W1911538525
OMON01000011
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
1928
2002
+
Ala
TGC
[ENA]
¡û
>W1810073633
PEGI01000050
Bacillota
Lactiplantibacillus plantarum FlyG3.1.8 [PEGI]
230
304
+
Ala
TGC
[ENA]
¡û
>W1810073684
PEGJ01000058
Bacillota
Lactiplantibacillus plantarum FlyG7.1.6 [PEGJ]
230
304
+
Ala
TGC
[ENA]
¡û
>W1810074096
PEGR01000045
Bacillota
Lactiplantibacillus plantarum FlyG20.1.4 [PEGR]
230
304
+
Ala
TGC
[ENA]
¡û
>W1810488843
QAZP01000037
Bacillota
Lactiplantibacillus plantarum DS23_9 [QAZP]
223
149
-
Ala
TGC
[ENA]
¡û
>W1810504493
QBKX01000077
Bacillota
Lactiplantibacillus plantarum 201 [QBKX]
188
114
-
Ala
TGC
[ENA]
¡û
>C151038496
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1797
1872
+
Ala
TGC
[Ensembl]
¡û
>C151038498
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
605486
605561
+
Ala
TGC
[Ensembl]
¡û
>C151038526
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1640371
1640446
+
Ala
TGC
[Ensembl]
¡û
>C151038541
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
2076125
2076200
+
Ala
TGC
[Ensembl]
¡û
>C151038560
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
5102487
5102562
+
Ala
TGC
[Ensembl]
¡û
>C151038562
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
5108077
5108152
+
Ala
TGC
[Ensembl]
¡û
>C11113485
CP002222
Bacillota
Lactiplantibacillus plantarum ST-III [CP002222]
489413
489487
+
Ala
TGC
[Ensembl]
¡û
>C11113500
CP002222
Bacillota
Lactiplantibacillus plantarum ST-III [CP002222]
1133777
1133851
+
Ala
TGC
[Ensembl]
¡û
>W1511500407
JXAX01000045
Bacillota
Lactiplantibacillus plantarum 90sk [JXAX]
96
22
-
Ala
TGC
[ENA]
¡û
>C161077310
CP014780
Bacillota
Lactiplantibacillus plantarum JBE245 [CP014780]
494003
494077
+
Ala
TGC
-
¡û
>C161077328
CP014780
Bacillota
Lactiplantibacillus plantarum JBE245 [CP014780]
1182024
1182098
+
Ala
TGC
-
¡û
>C161083552
CP015126
Bacillota
Lactiplantibacillus plantarum CAUH2 [CP015126]
487210
487284
+
Ala
TGC
-
¡û
>C161083568
CP015126
Bacillota
Lactiplantibacillus plantarum CAUH2 [CP015126]
1175057
1175131
+
Ala
TGC
-
¡û
>W1610187706
FBSY01000010
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
1985
2059
+
Ala
TGC
[ENA]
¡û
>C131007805
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1872082
1872008
-
Ala
TGC
[Ensembl]
¡û
>C131007821
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1740923
1740849
-
Ala
TGC
[Ensembl]
¡û
>C131007839
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1651145
1651071
-
Ala
TGC
[Ensembl]
¡û
>C131007848
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1447041
1446967
-
Ala
TGC
[Ensembl]
¡û
>W1610650146
LJIV01000016
Bacillota
Leuconostoc lactis [LJIV]
3416
3342
-
Ala
TGC
[ENA]
¡û
>W1610681670
LKLZ01000004
Bacillota
Lactiplantibacillus plantarum WJL [LKLZ]
405
331
-
Ala
TGC
[ENA]
¡û
>W1610943400
LUWB01000017
Bacillota
Lactiplantibacillus plantarum [LUWB]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610943520
LUWD01000025
Bacillota
Lactiplantibacillus plantarum [LUWD]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610943569
LUWE01000004
Bacillota
Lactiplantibacillus plantarum [LUWE]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610944164
LUWO01000017
Bacillota
Lactiplantibacillus plantarum [LUWO]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610944749
LUWX01000180
Bacillota
Lactiplantibacillus plantarum [LUWX]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610944907
LUXA01000029
Bacillota
Lactiplantibacillus plantarum [LUXA]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610945192
LUXF01000027
Bacillota
Lactiplantibacillus plantarum [LUXF]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610945329
LUXH01000145
Bacillota
Lactiplantibacillus plantarum [LUXH]
173
99
-
Ala
TGC
[ENA]
¡û
>W1610945586
LUXL01000034
Bacillota
Lactiplantibacillus plantarum [LUXL]
160624
160550
-
Ala
TGC
[ENA]
¡û
>W1710189322
FBSY01000010
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
1985
2059
+
Ala
TGC
[ENA]
¡û
>W1710568608
FOTS01000064
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
24251
24176
-
Ala
TGC
[ENA]
¡û
>W1710716022
LEBG01000095
Bacillota
Lactiplantibacillus plantarum [LEBG]
145
219
+
Ala
TGC
[ENA]
¡û
>W1710716859
LEBV01000026
Bacillota
Lactiplantibacillus plantarum [LEBV]
273
347
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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