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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264316 (47 seq.)
>W1710987636
LPUT01000015
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1377
1302
-
Lys
TTT
[ENA]
¡û
>W1710987649
LPUT01000016
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1377
1302
-
Lys
TTT
[ENA]
¡û
>W1710987662
LPUT01000017
Bacillota
Sporosarcina sp. HYO08 [LPUT]
841
766
-
Lys
TTT
[ENA]
¡û
>W1710987684
LPUT01000027
Bacillota
Sporosarcina sp. HYO08 [LPUT]
422418
422493
+
Lys
TTT
[ENA]
¡û
>W1711075878
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
2671890
2671815
-
Lys
TTT
[ENA]
¡û
>W1711075893
LSKU01000002
Bacillota
Tepidibacillus decaturensis [LSKU]
53661
53736
+
Lys
TTT
[ENA]
¡û
>W131245090
CARA01000023
Bacillota
Schnuerera ultunensis Esp [CARA]
16020
15945
-
Lys
TTT
[ENA]
¡û
>W131245140
CARA01000184
Bacillota
Schnuerera ultunensis Esp [CARA]
859
934
+
Lys
TTT
[ENA]
¡û
>W1711430639
MIJF01000004
Bacillota
Vulcanibacillus modesticaldus [MIJF]
764
839
+
Lys
TTT
[ENA]
¡û
>W1711430653
MIJF01000004
Bacillota
Vulcanibacillus modesticaldus [MIJF]
32857
32932
+
Lys
TTT
[ENA]
¡û
>W1711430665
MIJF01000016
Bacillota
Vulcanibacillus modesticaldus [MIJF]
11558
11483
-
Lys
TTT
[ENA]
¡û
>C171063506
CP017560
Bacillota
Sporosarcina ureilytica LMG 22257 [CP017560]
1032033
1032108
+
Lys
TTT
-
¡û
>C171063530
CP017560
Bacillota
Sporosarcina ureilytica LMG 22257 [CP017560]
135834
135759
-
Lys
TTT
-
¡û
>C171098351
CP019699
Bacillota
Novibacillus thermophilus SG-1 [CP019699]
188161
188236
+
Lys
TTT
-
¡û
>C171098356
CP019699
Bacillota
Novibacillus thermophilus SG-1 [CP019699]
311589
311664
+
Lys
TTT
-
¡û
>WENV180095250
MTBK01058493
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
6372
6297
-
Lys
TTT
[ENA]
¢þ
>WENV180099047
MTBK01284016
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2489
2564
+
Lys
TTT
[ENA]
¢þ
>W141207414
AZNU01000001
Bacillota
Thermicanus aegyptius DSM 12793 [AZNU]
658
733
+
Lys
TTT
[ENA]
¡û
>W141207424
AZNU01000005
Bacillota
Thermicanus aegyptius DSM 12793 [AZNU]
656
731
+
Lys
TTT
[ENA]
¡û
>WENV183514729
OMKS01029463
[OMKS] sediment metagenome; hot spring sediment
562
487
-
Lys
TTT
[ENA]
¢þ
>WENV170687790
LFRM01211406
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
36531
36606
+
Lys
TTT
[ENA]
¢þ
>C191157014
CP038012
Bacillota
Sporosarcina pasteurii BNCC 337394 [CP038012]
307180
307255
+
Lys
TTT
-
¡û
>C191157050
CP038012
Bacillota
Sporosarcina pasteurii BNCC 337394 [CP038012]
2678165
2678090
-
Lys
TTT
-
¡û
>W1911737778
QTSZ01000005
Bacillota
Ornithinibacillus gellani LJ137 [QTSZ]
967
892
-
Lys
TTT
[ENA]
¡û
>W1911737816
QTSZ01000043
Bacillota
Ornithinibacillus gellani LJ137 [QTSZ]
716
791
+
Lys
TTT
[ENA]
¡û
>W1911737830
QTSZ01000052
Bacillota
Ornithinibacillus gellani LJ137 [QTSZ]
127509
127433
-
Lys
TTT
[ENA]
¡û
>W1510647568
CVPE01000001
Bacillota
Rubeoparvulum massiliense mt6 [CVPE]
5120
5045
-
Lys
TTT
[ENA]
¡û
>W1510647607
CVPE01000004
Bacillota
Rubeoparvulum massiliense mt6 [CVPE]
244895
244820
-
Lys
TTT
[ENA]
¡û
>W1510647615
CVPE01000005
Bacillota
Rubeoparvulum massiliense mt6 [CVPE]
517
442
-
Lys
TTT
[ENA]
¡û
>W1610042035
BAXM01000012
Bacillota
Bacillus sp. JCM 19056 [BAXM]
73598
73523
-
Lys
TTT
[ENA]
¡û
>W1610042063
BAXM01000084
Bacillota
Bacillus sp. JCM 19056 [BAXM]
694
619
-
Lys
TTT
[ENA]
¡û
>W1610082745
BDGM01000019
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
16859
16934
+
Lys
TTT
[ENA]
¡û
>W1610082758
BDGM01000041
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1107
1032
-
Lys
TTT
[ENA]
¡û
>W1610082786
BDGM01000045
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1215
1290
+
Lys
TTT
[ENA]
¡û
>W1610082796
BDGM01000045
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
52243
52318
+
Lys
TTT
[ENA]
¡û
>W1610842580
LPUT01000015
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1377
1302
-
Lys
TTT
[ENA]
¡û
>W1610842593
LPUT01000016
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1377
1302
-
Lys
TTT
[ENA]
¡û
>W1610842606
LPUT01000017
Bacillota
Sporosarcina sp. HYO08 [LPUT]
841
766
-
Lys
TTT
[ENA]
¡û
>W1610842628
LPUT01000027
Bacillota
Sporosarcina sp. HYO08 [LPUT]
422418
422493
+
Lys
TTT
[ENA]
¡û
>W1610915183
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
2671890
2671815
-
Lys
TTT
[ENA]
¡û
>W1610915198
LSKU01000002
Bacillota
Tepidibacillus decaturensis [LSKU]
53661
53736
+
Lys
TTT
[ENA]
¡û
>W1710039129
BAXM01000012
Bacillota
Bacillus sp. JCM 19056 [BAXM]
73598
73523
-
Lys
TTT
[ENA]
¡û
>W1710039157
BAXM01000084
Bacillota
Bacillus sp. JCM 19056 [BAXM]
694
619
-
Lys
TTT
[ENA]
¡û
>W1710081919
BDGM01000019
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
16859
16934
+
Lys
TTT
[ENA]
¡û
>W1710081932
BDGM01000041
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1107
1032
-
Lys
TTT
[ENA]
¡û
>W1710081960
BDGM01000045
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1215
1290
+
Lys
TTT
[ENA]
¡û
>W1710081970
BDGM01000045
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
52243
52318
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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